메뉴 건너뛰기




Volumn 230, Issue 3, 2013, Pages 270-276

Identification of recurrent FGFR3 fusion genes in lung cancer through kinome-centred RNA sequencing

(28)  Majewski, Ian J a,b   Mittempergher, Lorenza a   Davidson, Nadia M c   Bosma, Astrid a   Willems, Stefan M d   Horlings, Hugo M e   De Rink, Iris a   Greger, Liliana f   Hooijer, Gerrit K J e   Peters, Dennis a   Nederlof, Petra M a   Hofland, Ingrid a   De Jong, Jeroen a   Wesseling, Jelle a   Kluin, Roelof J C a   Brugman, Wim a   Kerkhoven, Ron a   Nieboer, Frank g   Roepman, Paul g   Broeks, Annegien a   more..


Author keywords

ALK; FGFR3; FGFR3 TACC3; fusion genes; kinome

Indexed keywords

FIBROBLAST GROWTH FACTOR RECEPTOR 3;

EID: 84878783802     PISSN: 00223417     EISSN: 10969896     Source Type: Journal    
DOI: 10.1002/path.4209     Document Type: Article
Times cited : (103)

References (30)
  • 1
    • 72849159485 scopus 로고
    • Chromosome studies on normal and leukemic human leukocytes
    • Nowell PC, Hungerford DA,. Chromosome studies on normal and leukemic human leukocytes. J Natl Cancer Inst 1960; 25: 85-109.
    • (1960) J Natl Cancer Inst , vol.25 , pp. 85-109
    • Nowell, P.C.1    Hungerford, D.A.2
  • 3
    • 54549094903 scopus 로고    scopus 로고
    • Somatic mutations affect key pathways in lung adenocarcinoma
    • Ding L, Getz G, Wheeler DA, et al,. Somatic mutations affect key pathways in lung adenocarcinoma. Nature 2008; 455: 1069-1075.
    • (2008) Nature , vol.455 , pp. 1069-1075
    • Ding, L.1    Getz, G.2    Wheeler, D.A.3
  • 4
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • The Cancer Genome Atlas Research Network.
    • The Cancer Genome Atlas Research Network. Comprehensive genomic characterization of squamous cell lung cancers. Nature 2012; 489: 519-525.
    • (2012) Nature , vol.489 , pp. 519-525
  • 5
    • 84866410479 scopus 로고    scopus 로고
    • Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing
    • Imielinski M, Berger AH, Hammerman PS, et al,. Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing. Cell 2012; 150: 1107-1120.
    • (2012) Cell , vol.150 , pp. 1107-1120
    • Imielinski, M.1    Berger, A.H.2    Hammerman, P.S.3
  • 6
    • 84866851740 scopus 로고    scopus 로고
    • Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer
    • Peifer M, Fernandez-Cuesta L, Sos ML, et al,. Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer. Nature Genet 2012; 44: 1104-1110.
    • (2012) Nature Genet , vol.44 , pp. 1104-1110
    • Peifer, M.1    Fernandez-Cuesta, L.2    Sos, M.L.3
  • 7
    • 84866849548 scopus 로고    scopus 로고
    • Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer
    • Rudin CM, Durinck S, Stawiski EW, et al,. Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer. Nature Genet 2012; 44: 1111-1116.
    • (2012) Nature Genet , vol.44 , pp. 1111-1116
    • Rudin, C.M.1    Durinck, S.2    Stawiski, E.W.3
  • 8
    • 84868309107 scopus 로고    scopus 로고
    • The transcriptional landscape and mutational profile of lung adenocarcinoma
    • Seo JS, Ju YS, Lee WC, et al,. The transcriptional landscape and mutational profile of lung adenocarcinoma. Genome Res 2012; 22: 2109-2119.
    • (2012) Genome Res , vol.22 , pp. 2109-2119
    • Seo, J.S.1    Ju, Y.S.2    Lee, W.C.3
  • 10
    • 80053386829 scopus 로고    scopus 로고
    • Effect of crizotinib on overall survival in patients with advanced non-small-cell lung cancer harbouring ALK gene rearrangement: A retrospective analysis
    • Shaw AT, Yeap BY, Solomon BJ, et al,. Effect of crizotinib on overall survival in patients with advanced non-small-cell lung cancer harbouring ALK gene rearrangement: a retrospective analysis. Lancet Oncol 2011; 12: 1004-1012.
    • (2011) Lancet Oncol , vol.12 , pp. 1004-1012
    • Shaw, A.T.1    Yeap, B.Y.2    Solomon, B.J.3
  • 11
    • 84863338079 scopus 로고    scopus 로고
    • ROS1 rearrangements define a unique molecular class of lung cancers
    • Bergethon K, Shaw AT, Ou SH, et al,. ROS1 rearrangements define a unique molecular class of lung cancers. J Clin Oncol 2012; 30: 863-870.
    • (2012) J Clin Oncol , vol.30 , pp. 863-870
    • Bergethon, K.1    Shaw, A.T.2    Ou, S.H.3
  • 12
    • 84857985225 scopus 로고    scopus 로고
    • RET, ROS1 and ALK fusions in lung cancer
    • Takeuchi K, Soda M, Togashi Y, et al,. RET, ROS1 and ALK fusions in lung cancer. Nature Med 2012; 18: 378-381.
    • (2012) Nature Med , vol.18 , pp. 378-381
    • Takeuchi, K.1    Soda, M.2    Togashi, Y.3
  • 13
    • 58849167381 scopus 로고    scopus 로고
    • An immune response enriched 72-gene prognostic profile for early-stage non-small-cell lung cancer
    • Roepman P, Jassem J, Smit EF, et al,. An immune response enriched 72-gene prognostic profile for early-stage non-small-cell lung cancer. Clin Cancer Res 2009; 15: 284-290.
    • (2009) Clin Cancer Res , vol.15 , pp. 284-290
    • Roepman, P.1    Jassem, J.2    Smit, E.F.3
  • 14
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL,. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009; 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 15
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H, Handsaker B, Wysoker A, et al,. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009; 25: 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 16
    • 80051507403 scopus 로고    scopus 로고
    • TopHat-Fusion: An algorithm for discovery of novel fusion transcripts
    • Kim D, Salzberg SL,. TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biol 2011; 12: R72.
    • (2011) Genome Biol , vol.12
    • Kim, D.1    Salzberg, S.L.2
  • 17
    • 79957829805 scopus 로고    scopus 로고
    • DeFuse: An algorithm for gene fusion discovery in tumor RNA-Seq data
    • McPherson A, Hormozdiari F, Zayed A, et al,. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. PLoS Comput Biol 2011; 7: e1001138.
    • (2011) PLoS Comput Biol , vol.7
    • McPherson, A.1    Hormozdiari, F.2    Zayed, A.3
  • 18
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr MG, Haas BJ, Yassour M, et al,. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnol 2011; 29: 644-652.
    • (2011) Nature Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3
  • 19
    • 84873347374 scopus 로고    scopus 로고
    • The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma
    • Parker BC, Annala MJ, Cogdell DE, et al,. The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma. J Clin Invest 2013; 123: 855-865.
    • (2013) J Clin Invest , vol.123 , pp. 855-865
    • Parker, B.C.1    Annala, M.J.2    Cogdell, D.E.3
  • 20
    • 84865805666 scopus 로고    scopus 로고
    • Transforming fusions of FGFR and TACC genes in human glioblastoma
    • Singh D, Chan JM, Zoppoli P, et al,. Transforming fusions of FGFR and TACC genes in human glioblastoma. Science 2012; 337: 1231-1235.
    • (2012) Science , vol.337 , pp. 1231-1235
    • Singh, D.1    Chan, J.M.2    Zoppoli, P.3
  • 21
    • 84873045850 scopus 로고    scopus 로고
    • Oncogenic FGFR3 gene fusions in bladder cancer
    • Williams SV, Hurst CD, Knowles MA,. Oncogenic FGFR3 gene fusions in bladder cancer. Hum Mol Genet 2013; 22: 795-803.
    • (2013) Hum Mol Genet , vol.22 , pp. 795-803
    • Williams, S.V.1    Hurst, C.D.2    Knowles, M.A.3
  • 22
    • 70349336416 scopus 로고    scopus 로고
    • Clinical features and outcome of patients with non-small-cell lung cancer who harbor EML4-ALK
    • Shaw AT, Yeap BY, Mino-Kenudson M, et al,. Clinical features and outcome of patients with non-small-cell lung cancer who harbor EML4-ALK. J Clin Oncol 2009; 27: 4247-4253.
    • (2009) J Clin Oncol , vol.27 , pp. 4247-4253
    • Shaw, A.T.1    Yeap, B.Y.2    Mino-Kenudson, M.3
  • 23
    • 0032841519 scopus 로고    scopus 로고
    • Frequent activating mutations of FGFR3 in human bladder and cervix carcinomas
    • Cappellen D, De Oliveira C, Ricol D, et al,. Frequent activating mutations of FGFR3 in human bladder and cervix carcinomas. Nature Genet 1999; 23: 18-20.
    • (1999) Nature Genet , vol.23 , pp. 18-20
    • Cappellen, D.1    De Oliveira, C.2    Ricol, D.3
  • 24
    • 0030922231 scopus 로고    scopus 로고
    • Frequent translocation t(4;14)(p16.3;q32.3) in multiple myeloma is associated with increased expression and activating mutations of fibroblast growth factor receptor 3
    • DOI 10.1038/ng0797-260
    • Chesi M, Nardini E, Brents LA, et al,. Frequent translocation t(4;14)(p16.3;q32.3) in multiple myeloma is associated with increased expression and activating mutations of fibroblast growth factor receptor 3. Nature Genet 1997; 16: 260-264. (Pubitemid 27280209)
    • (1997) Nature Genetics , vol.16 , Issue.3 , pp. 260-264
    • Chesi, M.1    Nardini, E.2    Brents, L.A.3    Schrock, E.4    Ried, T.5    Kuehl, W.M.6    Bergsagel, P.L.7
  • 25
    • 78650451788 scopus 로고    scopus 로고
    • Frequent and focal FGFR1 amplification associates with therapeutically tractable FGFR1 dependency in squamous cell lung cancer
    • 62ra93.
    • Weiss J, Sos ML, Seidel D, et al,. Frequent and focal FGFR1 amplification associates with therapeutically tractable FGFR1 dependency in squamous cell lung cancer. Sci Transl Med 2010; 2: 62ra93.
    • (2010) Sci Transl Med , vol.2
    • Weiss, J.1    Sos, M.L.2    Seidel, D.3
  • 26
    • 78650875209 scopus 로고    scopus 로고
    • Small molecule FGF receptor inhibitors block FGFR-dependent urothelial carcinoma growth in vitro and in vivo
    • Lamont FR, Tomlinson DC, Cooper PA, et al,. Small molecule FGF receptor inhibitors block FGFR-dependent urothelial carcinoma growth in vitro and in vivo. Br J Cancer 2011; 104: 75-82.
    • (2011) Br J Cancer , vol.104 , pp. 75-82
    • Lamont, F.R.1    Tomlinson, D.C.2    Cooper, P.A.3
  • 27
    • 84878781242 scopus 로고    scopus 로고
    • Identification of targetable FGFR gene fusions in diverse cancers
    • DOI: 10.1158/2159-8290.CD-13-0050.
    • Wu YM, Su F, Kalyana-Sundaram S, et al,. Identification of targetable FGFR gene fusions in diverse cancers. Cancer Discov 2013; DOI: 10.1158/2159-8290.CD-13-0050.
    • (2013) Cancer Discov
    • Wu, Y.M.1    Su, F.2    Kalyana-Sundaram, S.3
  • 28
    • 80052177544 scopus 로고    scopus 로고
    • Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1
    • Agrawal N, Frederick MJ, Pickering CR, et al,. Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1. Science 2011; 333: 1154-1157.
    • (2011) Science , vol.333 , pp. 1154-1157
    • Agrawal, N.1    Frederick, M.J.2    Pickering, C.R.3
  • 29
    • 80052158097 scopus 로고    scopus 로고
    • The mutational landscape of head and neck squamous cell carcinoma
    • Stransky N, Egloff AM, Tward AD, et al,. The mutational landscape of head and neck squamous cell carcinoma. Science 2011; 333: 1157-1160.
    • (2011) Science , vol.333 , pp. 1157-1160
    • Stransky, N.1    Egloff, A.M.2    Tward, A.D.3
  • 30
    • 79955560249 scopus 로고    scopus 로고
    • Transcriptionalconsequences of genomic structural aberrations in breast cancer
    • Inaki K, Hillmer AM, Ukil L, et al,. Transcriptionalconsequences of genomic structural aberrations in breast cancer. Genome Res 2011; 21: 676-687.
    • (2011) Genome Res , vol.21 , pp. 676-687
    • Inaki, K.1    Hillmer, A.M.2    Ukil, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.