Aptamer-conjugated gold nanoparticles for bioanalysis

Nanomedicine

Volumn 8, Issue 6, 2013, Pages 983-993

  Zhang, Jiani ^a   Liu, Bo ^a   Liu, Huixia ^a   Zhang, Xiaobing ^b   Tan, Weihong ^b,c  

^a CENTRAL SOUTH UNIVERSITY   (China)

^b HUNAN UNIVERSITY   (China)

^c UNIVERSITY OF FLORIDA   (United States)

Author keywords

aptamer; aptamer conjugated gold nanoparticle; chemiluminescence sensor; colorimetric sensor; electrochemical sensor; fluorescence sensor; gold nanoparticle

Indexed keywords

APTAMER; CARBON NANOTUBE; GOLD NANOPARTICLE; LIPOSOME;

BIOMEDICINE; CHEMOLUMINESCENCE; COLORIMETRY; CONDUCTANCE; DELIVERY; DRUG CONJUGATION; EARLY DIAGNOSIS; ELECTRON TRANSPORT; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENETIC PROCEDURES; HUMAN; MICELLE; PRIORITY JOURNAL; REVIEW; SYSTEMATIC REVIEW;

EID: 84878742489     PISSN: 17435889     EISSN: 17486963     Source Type: Journal    
DOI: 10.2217/nnm.13.80     Document Type: Review

References (80)

1. Ellington AD, Szostak JW. In vitro selection of RNA molecules that bind specific ligands. Nature 346(6287), 818-822 (1990).
2. Tuerk C, Gold L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249(4968), 505-510 (1990).
3. Stadler A, Chi C, van der Lelie D, Gang O. DNA-incorporating nanomaterials in biotechnological applications. Nanomedicine (Lond.) 5(2), 319-334 (2010).
4. Wang H, Yang R, Yang L, Tan W. Nucleic acid conjugated nanomaterials for enhanced molecular recognition. ACS Nano 3(9), 2451-2460 (2009).
5. Bunka DH, Stockley PG. Aptamers come of age - at last. Nature Rev. Microbiol. 4(8), 588-596 (2006).
6. Jenison RD, Gill SC, Pardi A, Polisky B. High-resolution molecular discrimination by RNA. Science 263(5152), 1425-1429 (1994).
7. Mairal T, Ozalp VC, Lozano Sanchez P, Mir M, Katakis I, O'Sullivan CK. Aptamers: molecular tools for analytical applications. Anal. Bioanal. Chem. 390(4), 989-1007 (2008).
8. Patel DJ, Suri AK, Jiang F et al. Structure, recognition and adaptive binding in RNA aptamer complexes. J. Mol. Biol. 272(5), 645-664 (1997).
9. Sefah K, Tang ZW, Shangguan DH et al. Molecular recognition of acute myeloid leukemia using aptamers. Leukemia 23(2), 235-244 (2009).
10. Wilson DS, Szostak JW. In vitro selection of functional nucleic acids. Ann. Rev. Biochem. 68, 611-647 (1999).
11. Chen HW, Medley CD, Sefah K et al. Molecular recognition of small-cell lung cancer cells using aptamers. ChemMedChem 3(6), 991-1001 (2008).
12. Tang Z, Shangguan D, Wang K et al. Selection of aptamers for molecular recognition and characterization of cancer cells. Anal. Chem. 79(13), 4900-4907 (2007).
13. Shangguan D, Li Y, Tang Z et al. Aptamers evolved from live cells as effective molecular probes for cancer study. Proc. Natl Acad. Sci. USA 103(32), 11838-11843 (2006).
14. Oh SS, Ahmad KM, Cho M, Kim S, Xiao Y, Soh HT. Improving aptamer selection efficiency through volume dilution, magnetic concentration, and continuous washing in microfluidic channels. Anal. Chem. 83(17), 6883-6889 (2011).
15. Guo KT, Ziemer G, Paul A, Wendel HP. CELL-SELEX: novel perspectives of aptamer-based therapeutics. Int. J. Mol. Sci. 9(4), 668-678 (2008).
16. Lee JF, Stovall GM, Ellington AD. Aptamer therapeutics advance. Curr. Opin. Chem. Biol. 10(3), 282-289 (2006).
17. Shangguan D, Cao Z, Meng L et al. Cell specific aptamer probes for membrane protein elucidation in cancer cells. J. Proteome Res. 7(5), 2133-2139 (2008).
18. Mallikaratchy P, Tang Z, Kwame S, Meng L, Shangguan D, Tan W. Aptamer directly evolved from live cells recognizes membrane bound immunoglobin heavy mu chain in Burkitt's lymphoma cells. Mol. Cell. Proteomics 6(12), 2230-2238 (2007).
19. Xiao Z, Shangguan D, Cao Z, Fang X, Tan W. Cell-specific internalization study of an aptamer from whole cell selection. Chemistry 14(6), 1769-1775 (2008).
20. Chu TC, Marks JW, 3rd, Lavery LA et al. Aptamer:toxin conjugates that specifically target prostate tumor cells. Cancer Res. 66(12), 5989-5992 (2006).
21. Farokhzad OC, Cheng J, Teply BA et al. Targeted nanoparticle-aptamer bioconjugates for cancer chemotherapy in vivo. Proc. Natl Acad. Sci. USA 103(16), 6315-6320 (2006).
22. Huang YF, Shangguan D, Liu H et al. Molecular assembly of an aptamer-drug conjugate for targeted drug delivery to tumor cells. ChemBioChem 10(5), 862-868 (2009).
23. Feynman RP. There's plenty of room at the bottom. Eng. Sci. 23(5), 22-36 (1960).
24. Murray C, Kagan C, Bawendi M. Synthesis and characterization of monodisperse nanocrystals and close-packed nanocrystal assemblies. Ann. Rev. Mater. Sci. 30(1), 545-610 (2000).
25. Banerjee S, Wong SS. Synthesis and characterization of carbon nanotube-nanocrystal heterostructures. Nano Lett. 2(3), 195-200 (2002).
26. Lue JT. A review of characterization and physical property studies of metallic nanoparticles. J. Phys. Chem. Solids 62(9-10), 1599-1612 (2001).
27. Daniel MC, Astruc D. Gold nanopartieles: assembly, supramotecular chemistry and applications. Chem. Rev. 104(1), 293-346 (2004).
28. Rosi NL, Giljohann DA, Thaxton CS, Lytton-Jean AKR, Han MS, Mirkin CA. Oligonucleotide-modified gold nanoparticles for intracellular gene regulation. Science 312(5776), 1027-1030 (2006).
29. Sperling RA, Gil PR, Zhang F, Zanella M, Parak WJ. Biological applications of gold nanoparticles. Chem. Soc. Rev. 37(9), 1896-1908 (2008).
30. Storhoff JJ, Lucas AD, Garimella V, Bao YP, Müller UR. Homogeneous detection of unamplified genomic DNA sequences based on colorimetric scatter of gold nanoparticle probes. Nat. Biotechnol. 22(7), 883-887 (2004).
31. Grzelczak M, Perez-Juste J, Mulvaney P, Liz Marzan LM. Shape control in gold nanoparticle synthesis. Chem. Soc. Rev. 37(9), 1783-1791 (2008).
32. Lu A-H, Salabas EL, Schüth F. Magnetic nanoparticles: synthesis, protection, functionalization, and application. Angew. Chem. Int. Ed. Engl. 46(8), 1222-1244 (2007).
33. Pavlov V, Xiao Y, Shlyahovsky B, Willner I. Aptamer-functionalized Au nanoparticles for the amplified optical detection of thrombin. J. Am. Chem. Soc. 126(38), 11768-11769 (2004).
34. Slowing II, Vivero-Escoto JL, Wu CW, Lin VS. Mesoporous silica nanoparticles as controlled release drug delivery and gene transfection carriers. Adv. Drug Deliv. Rev. 60(11), 1278-1288 (2008).
35. Daniel MC, Astruc D. Gold nanoparticles: assembly, supramolecular chemistry, quantum-size-related properties, and applications toward biology, catalysis, and nanotechnology. Chem. Rev. 104(1), 293-346 (2004).
36. Sau TK, Pal A, Jana NR, Wang ZL, Pal T. Size controlled synthesis of gold nanoparticles using photochemically prepared seed particles. J. Nanopart. Res. 3(4), 257-261 (2001).
37. Liu J, Lu Y. Fast colorimetric sensing of adenosine and cocaine based on a general sensor design involving aptamers and nanoparticles. Angew. Chem. Int. Ed. Engl. 118(1), 96-100 (2006).
38. Chah S, Hammond MR, Zare RN. Gold nanoparticles as a colorimetric sensor for protein conformational changes. Chem. Biol. 12(3), 323-328 (2005).
39. Kanjanawarut R, Su X. Colorimetric detection of DNA using unmodified metallic nanoparticles and peptide nucleic acid probes. Anal. Chem. 81(15), 6122-6129 (2009).
40. Zhao W, Chiuman W, Lam JC et al. DNA aptamer folding on gold nanoparticles: from colloid chemistry to biosensors. J. Am. Chem. Soc. 130(11), 3610-3618 (2008).
41. Bunz UH, Rotello VM. Gold nanoparticle-fluorophore complexes: sensitive and discerning "noses" for biosystems sensing. Angew. Chem. Int. Ed. Engl. 49(19), 3268-3279 (2010).
42. Chen Y, O'Donoghue MB, Huang YF et al. A surface energy transfer nanoruler for measuring binding site distances on live cell surfaces. J. Am. Chem. Soc. 132(46), 16559-16570 (2010).
43. Zheng D, Seferos DS, Giljohann DA, Patel PC, Mirkin CA. Aptamer nano-flares for molecular detection in living cells. Nano Lett. 9(9), 3258-3261 (2009).
44. Huang C-C, Chiu S-H, Huang Y-F, Chang H-T. Aptamer-functionalized gold nanoparticles for turn-on light switch detection of platelet-derived growth factor. Anal. Chem. 79(13), 4798-4804 (2007).
45. Zhang J, Wang L, Zhang H, Boey F, Song S, Fan C. Aptamer-based multicolor fluorescent gold nanoprobes for multiplex detection in homogeneous solution. Small 6(2), 201-204 (2010).
46. El-Brolossy TA, Abdallah T, Mohamed MB et al. Shape and size dependence of the surface plasmon resonance of gold nanoparticles studied by photoacoustic technique. Eur. Phys. J. Spec. Top. 153(1), 361-364 (2008).
47. He L, Smith EA, Natan MJ, Keating CD. The distance-dependence of colloidal Au-amplified surface plasmon resonance. J. Phys. Chem. B 108(30), 10973-10980 (2004).
48. Zhao W, Brook MA, Li Y. Design of gold nanoparticle-based colorimetric biosensing assays. ChemBioChem 9(15), 2363-2371 (2008).
49. Liu J, Lu Y. Fast colorimetric sensing of adenosine and cocaine based on a general sensor design involving aptamers and nanoparticles. Angew. Chem. Int. Ed. Engl. 45(1), 90-94 (2005).
50. Liu JW, Lu Y. Smart nanomaterials responsive to multiple chemical stimuli with controllable cooperativity. Adv. Mater. Adv. Mat. 18(13), 1667-1671 (2006).
51. Chavez JL, Lyon W, Kelley-Loughnane N, Stone MO. Theophylline detection using an aptamer and DNA-gold nanoparticle conjugates. Biosens. Bioelectron. 26(1), 23-28 (2010).
52. Liu J, Lu Y. Preparation of aptamer-linked gold nanoparticle purple aggregates for colorimetric sensing of analytes. Nat. Protoc. 1(1), 246-252 (2006).
53. Liu J, Mazumdar D, Lu Y. A simple and sensitive "dipstick" test in serum based on lateral flow separation of aptamer-linked nanostructures. Angew. Chem. Int. Ed. Engl. 45(47), 7955-7959 (2006).
54. Liu XP, Zhou ZH, Zhang LL, Tan ZY, Shen GL, Yu RQ. Colorimetric sensing of adenosine based on aptamer binding inducing gold nanoparticle aggregation. Chinese J. Chem. 27(10), 1855-1859 (2009).
55. Yang C, Wang Y, Marty JL, Yang XR. Aptamer-based colorimetric biosensing of Ochratoxin A using unmodified gold nanoparticles indicator. Biosens. Bioelectron. 26(5), 2724-2727 (2011).
56. Mirkin CA, Letsinger RL, Mucic RC, Storhoff JJ. A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 382(6592), 607-609 (1996).
57. Elghanian R, Storhoff JJ, Mucic RC, Letsinger RL, Mirkin CA. Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles. Science 277(5329), 1078-1081 (1997).
58. Storhoff JJ, Elghanian R, Mucic RC, Mirkin CA, Letsinger RL. One-pot colorimetric differentiation of polynucleotides with single base imperfections using gold nanoparticle probes. J. Am. Chem. Soc. 120(9), 1959-1964 (1998).
59. Storhoff JJ, Lucas AD, Garimella V, Bao YP, Muller UR. Homogeneous detection of unamplified genomic DNA sequences based on colorimetric scatter of gold nanoparticle probes. Nat. Biotechnol. 22(7), 883-887 (2004).
60. Thaxton CS, Georganopoulou DG, Mirkin CA. Gold nanoparticle probes for the detection of nucleic acid targets. Clin. Chim. Acta 363(1-2), 120-126 (2006).
61. Cao YC, Jin RC, Thaxton S, Mirkin CA. A two-color-change, nanoparticle-based method for DNA detection. Talanta 67(3), 449-455 (2005).
62. Chakrabarti R, Klibanov AM. Nanocrystals modified with peptide nucleic acids (PNAs) for selective self-assembly and DNA detection. J. Am. Chem. Soc. 125(41), 12531-12540 (2003).
63. Li H, Rothberg LJ. Label-free colorimetric detection of specific sequences in genomic DNA amplified by the polymerase chain reaction. J. Am. Chem. Soc. 126(35), 10958-10961 (2004).
64. Li J, Chu X, Liu Y et al. A colorimetric method for point mutation detection using high-fidelity DNA ligase. Nucleic Acids Res. 33(19), e168 (2005).
65. Reynolds RA, Mirkin CA, Letsinger RL. Homogeneous, nanoparticle-based quantitative colorimetric detection of oligonucleotides. J. Am. Chem. Soc. 122(15), 3795-3796 (2000).
66. Wang LH, Liu XF, Hu XF, Song SP, Fan CH. Unmodified gold nanoparticles as a colorimetric probe for potassium DNA aptamers. Chem. Commun. (Camb.) 36, 3780-3782 (2006).
67. Wang Y, Li D, Ren W, Liu Z, Dong S, Wang E. Ultrasensitive colorimetric detection of protein by aptamer-Au nanoparticles conjugates based on a dot-blot assay. Chem. Commun. (Camb.) 22, 2520-2522 (2008).
68. Medley CD, Smith JE, Tang Z, Wu Y, Bamrungsap S, Tan W. Gold nanoparticle-based colorimetric assay for the direct detection of cancerous cells. Anal. Chem. 80(4), 1067-1072 (2008).
69. Liu G, Mao X, Phillips JA, Xu H, Tan W, Zeng L. Aptamer-nanoparticle strip biosensor for sensitive detection of cancer cells. Anal. Chem. 81(24), 10013-10018 (2009).
70. Cho EJ, Lee JW, Ellington AD. Applications of aptamers as sensors. Annu. Rev. Anal. Chem. (Palo Alto Calif.) 2, 241-264 (2009).
71. Wang Z, Lu Y. Functional DNA directed assembly of nanomaterials for biosensing. J. Mater. Chem. 19(13), 1788-1798 (2009).
72. Kerman K, Tamiya E. Aptamer-functionalized Au nanoparticles for the electrochemical detection of thrombin. J. Biomed. Nanotechnol. 4(2), 159-164 (2008).
73. Li B, Wang Y, Wei H, Dong S. Amplified electrochemical aptasensor taking AuNPs based sandwich sensing platform as a model. Biosens. Bioelectron. 23(7), 965-970 (2008).
74. Zhang S, Xia J, Li X. Electrochemical biosensor for detection of adenosine based on structure switching aptamer and amplification with reporter probe dna modified Au nanoparticles. Anal. Chem. 80(22), 8382-8388 (2008).
75. Kuang H, Chen W, Xu D et al. Fabricated aptamer-based electrochemical "signal-off" sensor of ochratoxin A. Biosens. Bioelectron. 26(2), 710-716 (2010).
76. Xiang Y, Zhang Y, Qian X, Chai Y, Wang J, Yuan R. Ultrasensitive aptamer-based protein detection via a dual amplified biocatalytic strategy. Biosens. Bioelectron. 25(11), 2539-2542 (2010).
77. Degefa TH, Hwang S, Kwon D, Park JH, Kwak J. Aptamer-based electrochemical detection of protein using enzymatic silver deposition. Electrochim. Acta 54(27), 6788-6791 (2009).
78. Zhang ZF, Cui H, Lai CZ, Liu LJ. Gold nanoparticle-catalyzed luminol chemiluminescence and its analytical applications. Anal. Chem. 77(10), 3324-3329 (2005).
79. Qi Y, Li B. A sensitive, label-free, aptamer-based biosensor using a gold nanoparticle-initiated chemiluminescence system. Chemistry 17(5), 1642-1648 (2011).
80. Liu W, Wei H, Lin Z, Mao S, Lin JM. Rare cell chemiluminescence detection based on aptamer-specific capture in microfluidic channels. Biosens. Bioelectron. 28(1), 438-442 (2011).