-
1
-
-
84962362409
-
Aryl hydrocarbon receptor-mediated effects of chlorinated polycyclic aromatic hydrocarbons
-
Ohura T, Morita M, Makino M, Amagai T, Shimoi K. 2007. Aryl hydrocarbon receptor-mediated effects of chlorinated polycyclic aromatic hydrocarbons. Chem Res Toxicol 20:1237-124
-
(2007)
Chem Res Toxicol
, vol.20
, pp. 1237-124
-
-
Ohura, T.1
Morita, M.2
Makino, M.3
Amagai, T.4
Shimoi, K.5
-
2
-
-
0022272071
-
Effects of structure on binding to the 2,3,7,8-TCDD receptor protein and AHH inductionhalogenated biphenyls
-
Safe S, Bandiera S, Sawyer T, Zmudzka B, Mason G, Romkes M, Dehomme M, Sparling J, Okey A, Fujita T. 1985. Effects of structure on binding to the 2,3,7,8-TCDD receptor protein and AHH inductionhalogenated biphenyls. Environ Health Perspect 61:21-2
-
(1985)
Environ Health Perspect
, vol.61
, pp. 21-2
-
-
Safe, S.1
Bandiera, S.2
Sawyer, T.3
Zmudzka, B.4
Mason, G.5
Romkes, M.6
Dehomme, M.7
Sparling, J.8
Okey, A.9
Fujita, T.10
-
3
-
-
0030888748
-
Aryl hydrocarbon receptormediated signal transduction
-
Rowlands JC, Gustafsson JÅ. 1997. Aryl hydrocarbon receptormediated signal transduction. Crit Rev Toxicol 27:109-13
-
(1997)
Crit Rev Toxicol
, vol.27
, pp. 109-13
-
-
Rowlands, J.C.1
Gustafsson, J.Å.2
-
4
-
-
0024997614
-
Polychlorinated biphenyls (PCBs), dibenzo-p-dioxins (PCDDs), dibenzofurans (PCDFs), and related compounds: Environmental and mechanistic considerations which support the development of toxic equivalency factors (TEFs)
-
Safe S. 1990. Polychlorinated biphenyls (PCBs), dibenzo-p-dioxins (PCDDs), dibenzofurans (PCDFs), and related compounds: Environmental and mechanistic considerations which support the development of toxic equivalency factors (TEFs). Crit Rev Toxicol 21:51-8
-
(1990)
Crit Rev Toxicol
, vol.21
, pp. 51-8
-
-
Safe, S.1
-
5
-
-
0021048670
-
Competitive binding to the cytosolic 2,3,7,8-tetrachlorodibenzo-pdioxin receptor: Effects of structure on the affinities of substituted halogenated biphenyls-A QSAR analysis
-
Bandiera S, Sawyer TW, Campbell MA, Toshio F, Safe S. 1983. Competitive binding to the cytosolic 2,3,7,8-tetrachlorodibenzo-pdioxin receptor: Effects of structure on the affinities of substituted halogenated biphenyls-A QSAR analysis. Biochem Pharmacol 32:3803-381
-
(1983)
Biochem Pharmacol
, vol.32
, pp. 3803-381
-
-
Bandiera, S.1
Sawyer, T.W.2
Campbell, M.A.3
Toshio, F.4
Safe, S.5
-
6
-
-
0035438394
-
Models of polychlorinated dibenzodioxins, dibenzofurans, and biphenyls binding affinity to the aryl hydrocarbon receptor developed using (13)C NMR data
-
Beger DR, Wilkes JG. 2001. Models of polychlorinated dibenzodioxins, dibenzofurans, and biphenyls binding affinity to the aryl hydrocarbon receptor developed using (13)C NMR data. J Chem Inf Comput Sci 41:1322-132
-
(2001)
J Chem Inf Comput Sci
, vol.41
, pp. 1322-132
-
-
Beger, D.R.1
Wilkes, J.G.2
-
7
-
-
31944435042
-
QSAR study of polychlorinated dibenzodioxins, dibenzofurans, and biphenyls using the heuristic method and support vector machine
-
Luan F, Ma WP, Zhang XY, Zhang HX, Liu MC, Hu ZD, Fan BT. 2006. QSAR study of polychlorinated dibenzodioxins, dibenzofurans, and biphenyls using the heuristic method and support vector machine. QSAR Comb Sc 25:46-5
-
(2006)
QSAR Comb Sc
, vol.25
, pp. 46-5
-
-
Luan, F.1
Ma, W.P.2
Zhang, X.Y.3
Zhang, H.X.4
Liu, M.C.5
Hu, Z.D.6
Fan, B.T.7
-
8
-
-
80054101103
-
Docking and 3D-QSAR studies on the Ah receptor binding affinities of polychlorinated biphenyls (PCBs), dibenzo-p-dioxins (PCDDs) and dibenzofurans (PCDFs)
-
Li F, Li X, Liu X, Zhang L, You L, Zhao J, Wu H. 2011. Docking and 3D-QSAR studies on the Ah receptor binding affinities of polychlorinated biphenyls (PCBs), dibenzo-p-dioxins (PCDDs) and dibenzofurans (PCDFs). Environ Toxicol Pharmacol 32:478-48
-
(2011)
Environ Toxicol Pharmacol
, vol.32
, pp. 478-48
-
-
Li, F.1
Li, X.2
Liu, X.3
Zhang, L.4
You, L.5
Zhao, J.6
Wu, H.7
-
9
-
-
0028978788
-
Three-dimensional quantitative structure-activity relationships of dioxins and dioxin-like compounds: Model validation and Ah receptor characterization
-
Waller CL, McKinney JD. 1995. Three-dimensional quantitative structure-activity relationships of dioxins and dioxin-like compounds: Model validation and Ah receptor characterization. Chem Res Toxicol 8:847-85
-
(1995)
Chem Res Toxicol
, vol.8
, pp. 847-85
-
-
Waller, C.L.1
McKinney, J.D.2
-
10
-
-
0035438390
-
Polarizability fields for use in threedimensional quantitative structure-activity relationship (3D-QSAR)
-
Bradley M, Waller CL. 2001. Polarizability fields for use in threedimensional quantitative structure-activity relationship (3D-QSAR). J Chem Inf Comput Sci 41:1301-130
-
(2001)
J Chem Inf Comput Sci
, vol.41
, pp. 1301-130
-
-
Bradley, M.1
Waller, C.L.2
-
11
-
-
33747089177
-
3D QSAR studies of dioxins and dioxin-like compounds using CoMFA and CoMSIA
-
Ashek A, Lee C, Park H, Cho SJ. 2006. 3D QSAR studies of dioxins and dioxin-like compounds using CoMFA and CoMSIA. Chemosphere 65:521-52
-
(2006)
Chemosphere
, vol.65
, pp. 521-52
-
-
Ashek, A.1
Lee, C.2
Park, H.3
Cho, S.J.4
-
12
-
-
33748880809
-
Virtual screening for aryl hydrocarbon receptor binding prediction
-
Piparo EL, Koehler K, Chana A, Benfenati E. 2006. Virtual screening for aryl hydrocarbon receptor binding prediction. J Med Chem 49:5702-570
-
(2006)
J Med Chem
, vol.49
, pp. 5702-570
-
-
Piparo, E.L.1
Koehler, K.2
Chana, A.3
Benfenati, E.4
-
13
-
-
77955685634
-
Estrogenic activity of anthraquinone derivatives: In vitro and in silico studies
-
Li F, Li X, Shao J, Chi P, Chen J, Wang Z. 2010. Estrogenic activity of anthraquinone derivatives: In vitro and in silico studies. Chem Res Toxicol 23:1349-135
-
(2010)
Chem Res Toxicol
, vol.23
, pp. 1349-135
-
-
Li, F.1
Li, X.2
Shao, J.3
Chi, P.4
Chen, J.5
Wang, Z.6
-
14
-
-
77951758435
-
Hormone activity of hydroxylated polybrominated diphenyl ethers on human thyroid receptor-b: In vitro and in silico investigations
-
Li F, Xie Q, Li X, Li N, Chi P, Chen J, Wang Z, Hao C. 2010. Hormone activity of hydroxylated polybrominated diphenyl ethers on human thyroid receptor-b: In vitro and in silico investigations. Environ Health Persp 118:602-60
-
(2010)
Environ Health Persp
, vol.118
, pp. 602-60
-
-
Li, F.1
Xie, Q.2
Li, X.3
Li, N.4
Chi, P.5
Chen, J.6
Wang, Z.7
Hao, C.8
-
15
-
-
27444435580
-
Toward selective histone deacetylase inhibitor design: Homology modeling, docking studies, and molecular dynamics simulations of human class I histone deacetylases
-
Wang DF, Helquist P, Wiech NL, Wiest O. 2005. Toward selective histone deacetylase inhibitor design: Homology modeling, docking studies, and molecular dynamics simulations of human class I histone deacetylases. J Med Chem 48:6936-694
-
(2005)
J Med Chem
, vol.48
, pp. 6936-694
-
-
Wang, D.F.1
Helquist, P.2
Wiech, N.L.3
Wiest, O.4
-
17
-
-
70449519407
-
In silico predication of nuclear hormone receptors for organic pollutants by homology modeling and molecular docking
-
Wu B, Zhang Y, Kong J, Zhang X, Cheng S. 2009. In silico predication of nuclear hormone receptors for organic pollutants by homology modeling and molecular docking. Toxicol Lett 191:69-7
-
(2009)
Toxicol Lett
, vol.191
, pp. 69-7
-
-
Wu, B.1
Zhang, Y.2
Kong, J.3
Zhang, X.4
Cheng, S.5
-
18
-
-
70349194570
-
Modeling of the aryl hydrocarbon receptor (AhR) ligand binding domain and its utility in virtual ligand screening to predict new AhR ligands
-
Bisson WH, Koch DC, O'Donnell EF, Khalil SM, Kerkvliet NI, Tanguay RL, Abagyan R, Kolluri SK. 2009. Modeling of the aryl hydrocarbon receptor (AhR) ligand binding domain and its utility in virtual ligand screening to predict new AhR ligands. J Med Chem 52:5635-564
-
(2009)
J Med Chem
, vol.52
, pp. 5635-564
-
-
Bisson, W.H.1
Koch, D.C.2
O'Donnell, E.F.3
Khalil, S.M.4
Kerkvliet, N.I.5
Tanguay, R.L.6
Abagyan, R.7
Kolluri, S.K.8
-
19
-
-
67649612842
-
Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis
-
Pandini A, Soshilov AA, Song Y, Zhao J, Bonati L, Denison MS. 2009. Detection of the TCDD binding-fingerprint within the Ah receptor ligand binding domain by structurally driven mutagenesis and functional analysis. Biochemistry 48:5972-598
-
(2009)
Biochemistry
, vol.48
, pp. 5972-598
-
-
Pandini, A.1
Soshilov, A.A.2
Song, Y.3
Zhao, J.4
Bonati, L.5
Denison, M.S.6
-
20
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. 2003. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31:3497-350
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-350
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
Thompson, J.D.7
-
21
-
-
42449090264
-
PROMALS3D: A tool for multiple protein sequence and structure alignments
-
Peil J, Kim B, Grishin NV. 2008. PROMALS3D: A tool for multiple protein sequence and structure alignments. Nucleic Acids Res 36:2295- 230
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Peil, J.1
Kim, B.2
Grishin, N.V.3
-
22
-
-
34247343346
-
Surflex-Dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search
-
Jain AN. 2007. Surflex-Dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search. J Comput Aided Mol Des 21:281-30
-
(2007)
J Comput Aided Mol Des
, vol.21
, pp. 281-30
-
-
Jain, A.N.1
-
23
-
-
67649518035
-
Homology modeling in drug discovery: Current trends and applications
-
Cavasotto CN, Phatak SS. 2009. Homology modeling in drug discovery: Current trends and applications. Drug Discov Today 14:13-1
-
(2009)
Drug Discov Today
, vol.14
, pp. 13-1
-
-
Cavasotto, C.N.1
Phatak, S.S.2
-
24
-
-
79951722953
-
Insights into the structure of urea-like compounds as inhibitors of the juvenile hormone epoxide hydrolase (JHEH) of the tobacco hornworm Manduca sexta: Analysis of the binding modes and structure-activity relationships of the inhibitors by docking and CoMFA calculations
-
Garriga M, Caballero J. 2011. Insights into the structure of urea-like compounds as inhibitors of the juvenile hormone epoxide hydrolase (JHEH) of the tobacco hornworm Manduca sexta: Analysis of the binding modes and structure-activity relationships of the inhibitors by docking and CoMFA calculations. Chemosphere 82:1604-161
-
(2011)
Chemosphere
, vol.82
, pp. 1604-161
-
-
Garriga, M.1
Caballero, J.2
-
25
-
-
77956185867
-
Improved 3D-QSAR analyzes for the predictive toxicology of polybrominated diphenyl ethers with CoMFA/CoMSIA and DFT
-
Gu C, Ju X, Jiang X, Yu K, Yang S, Sun C. 2010. Improved 3D-QSAR analyzes for the predictive toxicology of polybrominated diphenyl ethers with CoMFA/CoMSIA and DFT. Ecotoxicol Environ Saf 73:1470- 147
-
(2010)
Ecotoxicol Environ Saf
, vol.73
-
-
Gu, C.1
Ju, X.2
Jiang, X.3
Yu, K.4
Yang, S.5
Sun, C.6
-
26
-
-
0026705133
-
Comparative molecular field analysis of polyhalogenated dibenzo-p-dioxins, dibenzofurans, and biphenyls
-
Waller CL, McKinney JD. 1992. Comparative molecular field analysis of polyhalogenated dibenzo-p-dioxins, dibenzofurans, and biphenyls. J Med Chem 35:3660-366
-
(1992)
J Med Chem
, vol.35
, pp. 3660-366
-
-
Waller, C.L.1
McKinney, J.D.2
-
27
-
-
84867161305
-
QSAR study on applying support vector machine to binding affinity of Ah receptor with aromatic compounds
-
Zhou P, Zeng H, Zhou Y, Wu S, Li Z. 2006. QSAR study on applying support vector machine to binding affinity of Ah receptor with aromatic compounds. Acta Scientiae Circumstantiae 26:123-12
-
(2006)
Acta Scientiae Circumstantiae
, vol.26
, pp. 123-12
-
-
Zhou, P.1
Zeng, H.2
Zhou, Y.3
Wu, S.4
Li, Z.5
-
28
-
-
0033810049
-
Modeling of loops in protein structures
-
Fiser A, Do RK, Sali A. 2000. Modeling of loops in protein structures. Protein Sci 9:1753-177
-
(2000)
Protein Sci
, vol.9
, pp. 1753-177
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
30
-
-
34547566446
-
ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins
-
Wiederstein M, Sippl MJ. 2007. ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res 35:W407-W41
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Wiederstein, M.1
Sippl, M.J.2
-
31
-
-
0037434582
-
Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine
-
Jain AN. 2003. Surflex: Fully automatic flexible molecular docking using a molecular similarity-based search engine. J Med Chem 46:499- 51
-
(2003)
J Med Chem
, vol.46
-
-
Jain, A.N.1
-
32
-
-
82355186289
-
Combined 3D-QSAR, molecular docking, and molecular dynamics study on piperazinylglutamate- pyridines/pyrimidines as potent P2Y12 antagonists for inhibition of platelet aggregation
-
Hao M, Li Y, Wang Y, Yan Y, Zhang S. 2011. Combined 3D-QSAR, molecular docking, and molecular dynamics study on piperazinylglutamate- pyridines/pyrimidines as potent P2Y12 antagonists for inhibition of platelet aggregation. J Chem Inf Model 51:2560-257
-
(2011)
J Chem Inf Model
, vol.51
, pp. 2560-257
-
-
Hao, M.1
Li, Y.2
Wang, Y.3
Yan, Y.4
Zhang, S.5
-
33
-
-
77950916156
-
Development of predictive pharmacophore model for in silico screening, and 3D QSAR CoMFA and CoMSIA studies for lead optimization, for designing of potent tumor necrosis factor alpha converting enzyme inhibitors
-
Murumkar PR, Zambre VP, Yadav MR. 2010. Development of predictive pharmacophore model for in silico screening, and 3D QSAR CoMFA and CoMSIA studies for lead optimization, for designing of potent tumor necrosis factor alpha converting enzyme inhibitors. J Comput Aided Mol Des 24:143-15
-
(2010)
J Comput Aided Mol Des
, vol.24
, pp. 143-15
-
-
Murumkar, P.R.1
Zambre, V.P.2
Yadav, M.R.3
-
34
-
-
84859172580
-
Molecular modeling on pyrimidine-urea inhibitors of TNF-a production: An integrated approach using a combination of molecular docking, classification techniques, and 3D-QSAR CoMSIA
-
Mouchlis VD, Melagraki G, Mavromoustakos T, Kollias G, Afantitis A. 2012. Molecular modeling on pyrimidine-urea inhibitors of TNF-a production: An integrated approach using a combination of molecular docking, classification techniques, and 3D-QSAR CoMSIA. J Chem Inf Model 52:711-72
-
(2012)
J Chem Inf Model
, vol.52
, pp. 711-72
-
-
Mouchlis, V.D.1
Melagraki, G.2
Mavromoustakos, T.3
Kollias, G.4
Afantitis, A.5
-
35
-
-
0142026020
-
Quantitative structure- activity relationship methods: Perspectives on drug discovery and toxicology
-
Perkins R, Fang H, Tong W, Welsh WJ. 2003. Quantitative structure- activity relationship methods: Perspectives on drug discovery and toxicology. Environ Toxicol Chem 22:1666-167
-
(2003)
Environ Toxicol Chem
, vol.22
, pp. 1666-167
-
-
Perkins, R.1
Fang, H.2
Tong, W.3
Welsh, W.J.4
-
36
-
-
65449188232
-
alview Version 2-A multiple sequence alignment e*ditor and analysis workbench
-
Waterhouse AM, Procter JB, Martin DM, Clamp M, Barton GJ. 2009. alview Version 2-A multiple sequence alignment e*ditor and analysis workbench. Bioinformatics 25:1189-119
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-119
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
37
-
-
33749260698
-
A critical assessment of docking programs and scoring functions
-
Warren GL, Andrews W, Capelli AM, Clarke B, Londe JL, Lambert MH, Lindvall M, Nevins N, Semus SF, Senger S, Tedesco G,Wall ID, Woolven JM, Peishoff CE, Head MS. 2006. A critical assessment of docking programs and scoring functions. J Med Chem 49: 5912-5931.
-
(2006)
J Med Chem
, vol.49
, pp. 5912-5931
-
-
Warren, G.L.1
Andrews, W.2
Capelli, A.M.3
Clarke, B.4
Londe, J.L.5
Lambert, M.H.6
Lindvall, M.7
Nevins, N.8
Semus, S.F.9
Senger, S.10
Tedesco, G.11
Wall, I.D.12
Woolven, J.M.13
Peishoff, C.E.14
Head, M.S.15
|