-
1
-
-
82955212653
-
-
accessed on 17-April-2012
-
CUDA C Programming Guide. http://developer. download.nvidia.com/compute/ DevZone/docs/html/ C/doc/CUDA-C-Programming-Guide.pdf, accessed on 17-April-2012.
-
CUDA C Programming Guide
-
-
-
2
-
-
35648995516
-
-
Technical Report UCB/EECS-2006-183, EECS Dept., UC Berkeley, Dec
-
K. Asanovic, R. Bodik, B. C. Catanzaro, J. J. Gebis, P. Husbands, K. Keutzer, D. A. Patterson, W. L. Plishker, J. Shalf, S. W. Williams, and K. A. Yelick. The landscape of parallel computing research: A view from berkeley. Technical Report UCB/EECS-2006-183, EECS Dept., UC Berkeley, Dec 2006.
-
(2006)
The Landscape of Parallel Computing Research: A View from Berkeley
-
-
Asanovic, K.1
Bodik, R.2
Catanzaro, B.C.3
Gebis, J.J.4
Husbands, P.5
Keutzer, K.6
Patterson, D.A.7
Plishker, W.L.8
Shalf, J.9
Williams, S.W.10
Yelick, K.A.11
-
3
-
-
79952506197
-
Intra- and inter-molecular coevolution: The case of HIV1 protease and reverse transcriptase
-
A. Fred, J. Filipe, and H. Gamboa, editors, Biomedical Engineering Systems and Technologies Springer, Berlin Heidelberg
-
P. Boba, P. Weil, F. Hoffgaard, and K. Hamacher. Intra- and inter-molecular coevolution: The case of HIV1 protease and reverse transcriptase. In A. Fred, J. Filipe, and H. Gamboa, editors, Biomedical Engineering Systems and Technologies, volume 127 of Springer Communications in Computer and Information Science, pages 356-366. Springer, Berlin Heidelberg, 2011.
-
(2011)
Springer Communications in Computer and Information Science
, vol.127
, pp. 356-366
-
-
Boba, P.1
Weil, P.2
Hoffgaard, F.3
Hamacher, K.4
-
4
-
-
77953597989
-
Computing and visually analyzing mutual information in molecular co-evolution
-
S. Bremm, T. Schreck, P. Boba, S. Held, and K. Hamacher. Computing and visually analyzing mutual information in molecular co-evolution. BMC Bioinformatics, 11:330, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 330
-
-
Bremm, S.1
Schreck, T.2
Boba, P.3
Held, S.4
Hamacher, K.5
-
5
-
-
41049083552
-
Why should we care about molecular coevolution?
-
Jan
-
F. M. Codoñer and M. A. Fares. Why should we care about molecular coevolution? Evol Bioinform Online, 4:29-38, Jan 2008.
-
(2008)
Evol Bioinform Online
, vol.4
, pp. 29-38
-
-
Codoñer, F.M.1
Fares, M.A.2
-
6
-
-
38849115223
-
Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction
-
Feb
-
S. D. Dunn, L. M. Wahl, and G. B. Gloor. Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction. Bioinformatics, 24(3):333-40, Feb 2008.
-
(2008)
Bioinformatics
, vol.24
, Issue.3
, pp. 333-340
-
-
Dunn, S.D.1
Wahl, L.M.2
Gloor, G.B.3
-
7
-
-
39049100485
-
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation
-
Jan
-
R. Gouveia-Oliveira and A. G. Pedersen. Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation. Algorithms Mol Biol, 2(1):12, Jan 2007.
-
(2007)
Algorithms Mol Biol
, vol.2
, Issue.1
, pp. 12
-
-
Gouveia-Oliveira, R.1
Pedersen, A.G.2
-
8
-
-
67650766412
-
InterMap3D: Predicting and visualizing co-evolving protein residues
-
Aug
-
R. Gouveia-Oliveira, F. S. Roque, R. Wernersson, T. Sicheritz-Ponten, P. W. Sackett, A. Molgaard, and A. G. Pedersen. InterMap3D: predicting and visualizing co-evolving protein residues. Bioinformatics, 25(15):1963-1965, Aug 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.15
, pp. 1963-1965
-
-
Gouveia-Oliveira, R.1
Roque, F.S.2
Wernersson, R.3
Sicheritz-Ponten, T.4
Sackett, P.W.5
Molgaard, A.6
Pedersen, A.G.7
-
9
-
-
49049087284
-
Relating sequence evolution of HIV1-protease to its underlying molecular mechanics
-
K. Hamacher. Relating sequence evolution of HIV1-protease to its underlying molecular mechanics. Gene, 422:30-36, 2008.
-
(2008)
Gene
, vol.422
, pp. 30-36
-
-
Hamacher, K.1
-
10
-
-
84930349604
-
Highly efficient and scalable software for the simulation of turbulent flows in complex geometries
-
W. E. Nagel, D. B. Kröner, and M. M. Resch, editors, Springer Berlin Heidelberg
-
D. F. Harlacher, S. Roller, F. Hindenlang, C.-D. Munz, T. Kraus, M. Fischer, K. Geurts, M. Meinke, T. Klühspies, V. Metsch, and K. Benkert. Highly efficient and scalable software for the simulation of turbulent flows in complex geometries. In W. E. Nagel, D. B. Kröner, and M. M. Resch, editors, High Performance Computing in Science and Engineering '11, pages 289-307. Springer Berlin Heidelberg, 2012.
-
(2012)
High Performance Computing in Science and Engineering '11
, pp. 289-307
-
-
Harlacher, D.F.1
Roller, S.2
Hindenlang, F.3
Munz, C.-D.4
Kraus, T.5
Fischer, M.6
Geurts, K.7
Meinke, M.8
Klühspies, T.9
Metsch, V.10
Benkert, K.11
-
11
-
-
77951065786
-
BioPhysConnectoR: Connecting sequence information and biophysical models
-
F. Hoffgaard, P. Weil, and K. Hamacher. BioPhysConnectoR: Connecting sequence information and biophysical models. BMC Bioinformatics, 11(1):199, 2010.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
, pp. 199
-
-
Hoffgaard, F.1
Weil, P.2
Hamacher, K.3
-
13
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
DOI 10.1006/jmbi.1999.3091
-
D. Jones. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol., 292:195-202, 1999. (Pubitemid 29435759)
-
(1999)
Journal of Molecular Biology
, vol.292
, Issue.2
, pp. 195-202
-
-
Jones, D.T.1
-
15
-
-
77954995885
-
Debunking the 100x GPU vs. CPU myth: An evaluation of throughput computing on CPU and GPU
-
June
-
V. W. Lee, C. Kim, J. Chhugani, M. Deisher, D. Kim, A. D. Nguyen, N. Satish, M. Smelyanskiy, S. Chennupaty, P. Hammarlund, R. Singhal, and P. Dubey. Debunking the 100x GPU vs. CPU myth: an evaluation of throughput computing on CPU and GPU. SIGARCH Comput. Archit. News, 38(3):451-460, June 2010.
-
(2010)
SIGARCH Comput. Archit. News
, vol.38
, Issue.3
, pp. 451-460
-
-
Lee, V.W.1
Kim, C.2
Chhugani, J.3
Deisher, M.4
Kim, D.5
Nguyen, A.D.6
Satish, N.7
Smelyanskiy, M.8
Chennupaty, S.9
Hammarlund, P.10
Singhal, R.11
Dubey, P.12
-
17
-
-
33646413711
-
-
MIT Press, Cambridge
-
O. Lund, M. Nielsen, C. Lundegaard, and C. K. S. Brunak. Immunological Bioinformatics. MIT Press, Cambridge, 2005.
-
(2005)
Immunological Bioinformatics
-
-
Lund, O.1
Nielsen, M.2
Lundegaard, C.3
Brunak, C.K.S.4
-
18
-
-
0004272772
-
-
Cambridge University Press, Cambridge, 2. edition
-
D. MacKay. Information Theory, Inference, and Learning Algorithms. Cambridge University Press, Cambridge, 2. edition, 2004.
-
(2004)
Information Theory, Inference, and Learning Algorithms
-
-
MacKay, D.1
-
19
-
-
27944458910
-
Using information theory to search for co-evolving residues in proteins
-
Nov
-
L. C. Martin, G. B. Gloor, S. D. Dunn, and L. M. Wahl. Using information theory to search for co-evolving residues in proteins. Bioinformatics, 21(22):4116-4124, Nov 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.22
, pp. 4116-4124
-
-
Martin, L.C.1
Gloor, G.B.2
Dunn, S.D.3
Wahl, L.M.4
-
20
-
-
83755178457
-
Direct-coupling analysis of residue coevolution captures native contacts across many protein families
-
F. Morcos, A. Pagnani, B. Lunt, A. Bertolino, D. S. Marks, C. Sander, R. Zecchina, J. N. Onuchic, T. Hwa, and M. Weigt. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proc. Nat. Acad. Sci., 108(49):E1293-E1301, 2011.
-
(2011)
Proc. Nat. Acad. Sci.
, vol.108
, Issue.49
-
-
Morcos, F.1
Pagnani, A.2
Lunt, B.3
Bertolino, A.4
Marks, D.S.5
Sander, C.6
Zecchina, R.7
Onuchic, J.N.8
Hwa, T.9
Weigt, M.10
-
21
-
-
5344244656
-
-
R Development Core Team R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0
-
R Development Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria, 2008. ISBN 3-900051-07-0.
-
(2008)
R: A Language and Environment for Statistical Computing
-
-
-
23
-
-
79958770675
-
Parallel mutual information estimation for inferring gene regulatory networks on GPUs
-
H. Shi, B. Schmidt, W. Liu, and W. Müller-Wittig. Parallel mutual information estimation for inferring gene regulatory networks on GPUs. BMC Research Notes, 4(1):189, 2011.
-
(2011)
BMC Research Notes
, vol.4
, Issue.1
, pp. 189
-
-
Shi, H.1
Schmidt, B.2
Liu, W.3
Müller-Wittig, W.4
-
25
-
-
58549114185
-
Identification of direct residue contacts in protein-protein interaction by message passing
-
Jan
-
M. Weigt, R. A. White, H. Szurmant, J. A. Hoch, and T. Hwa. Identification of direct residue contacts in protein-protein interaction by message passing. P Natl Acad Sci Usa, 106(1):67-72, Jan 2009.
-
(2009)
P Natl Acad Sci Usa
, vol.106
, Issue.1
, pp. 67-72
-
-
Weigt, M.1
White, R.A.2
Szurmant, H.3
Hoch, J.A.4
Hwa, T.5
-
26
-
-
70449726432
-
Estimating sufficient statistics in co-evolutionary analysis by mutual information
-
P. Weil, F. Hoffgaard, and K. Hamacher. Estimating sufficient statistics in co-evolutionary analysis by mutual information. Computational Biology and Chemistry, 33(6):440-444, 2009.
-
(2009)
Computational Biology and Chemistry
, vol.33
, Issue.6
, pp. 440-444
-
-
Weil, P.1
Hoffgaard, F.2
Hamacher, K.3
-
27
-
-
34447104524
-
Features of Protein-Protein Interactions in Two-Component Signaling Deduced from Genomic Libraries
-
DOI 10.1016/S0076-6879(06)22004-4, PII S0076687906220044, Two Component Signaling Systems, Part A
-
R. A. White, H. Szurmant, J. A. Hoch, and T. Hwa. Features of protein-protein interactions in two-component signaling deduced from genomic libraries. Methods Enzymol., 422:75-101, 2007. (Pubitemid 47030645)
-
(2007)
Methods in Enzymology
, vol.422
, pp. 75-101
-
-
White, R.A.1
Szurmant, H.2
Hoch, J.A.3
Hwa, T.4
-
28
-
-
0029160568
-
Calcium-induced conformational transition revealed by the solution structure of apo calmodulin
-
M. Zhang, T. Tanaka, and M. Ikura. Calcium-induced conformational transition revealed by the solution structure of apo calmodulin. Nat Struct Mol Biol, 2(9):758-767, 1995.
-
(1995)
Nat Struct Mol Biol
, vol.2
, Issue.9
, pp. 758-767
-
-
Zhang, M.1
Tanaka, T.2
Ikura, M.3
|