메뉴 건너뛰기




Volumn 4, Issue , 2011, Pages

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

Author keywords

[No Author keywords available]

Indexed keywords


EID: 79958770675     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-4-189     Document Type: Article
Times cited : (25)

References (25)
  • 1
    • 34548696055 scopus 로고
    • Independent coordinates for strange attractors from mutual information
    • Independent coordinates for strange attractors from mutual information. AM Fraser HL Swinney, Physical Review A 1986 33 2318 2321
    • (1986) Physical Review A , vol.33 , pp. 2318-2321
    • Fraser, A.M.1    Swinney, H.L.2
  • 2
    • 0043028206 scopus 로고    scopus 로고
    • Mutual-information-based registration of medical images: A survey
    • 10.1109/TMI.2003.815867. 12906253
    • Mutual-information-based registration of medical images: a survey. JPW Pluim JBA Maintz MA Viergever, IEEE Transactions on Medical Imaging 2003 22 986 1004 10.1109/TMI.2003.815867 12906253
    • (2003) IEEE Transactions on Medical Imaging , vol.22 , pp. 986-1004
    • Pluim, J.P.W.1    Maintz, J.B.A.2    Viergever, M.A.3
  • 5
    • 12244294063 scopus 로고    scopus 로고
    • Construction of genomic networks using mutual-information clustering and reversible-jump Markov-chain-Monte-Carlo predictor design
    • 10.1016/S0165-1684(02)00469-3
    • Construction of genomic networks using mutual-information clustering and reversible-jump Markov-chain-Monte-Carlo predictor design. X Zhou X Wang ER Dougherty, Signal Processing 2003 83 745 761 10.1016/S0165-1684(02)00469-3
    • (2003) Signal Processing , vol.83 , pp. 745-761
    • Zhou, X.1    Wang, X.2    Dougherty, E.R.3
  • 6
    • 1842450622 scopus 로고    scopus 로고
    • Gene clustering based on clusterwide mutual information
    • DOI 10.1089/106652704773416939
    • Gene Clustering Based on Clusterwide Mutual Information. X Zhou X Wang ER Dougherty D Russ E Suh, Journal of Computational Biology 2004 11 147 161 10.1089/106652704773416939 15072693 (Pubitemid 38429368)
    • (2004) Journal of Computational Biology , vol.11 , Issue.1 , pp. 147-161
    • Zhou, X.1    Wang, X.2    Dougherty, E.R.3    Russ, D.4    Suh, E.5
  • 8
    • 58649124319 scopus 로고    scopus 로고
    • Parallel information theory based construction of gene regulatory networks
    • Parallel information theory based construction of gene regulatory networks. J Zola M Aluru S Aluru, Hipc 2008 336 349
    • (2008) Hipc , pp. 336-349
    • Zola, J.1    Aluru, M.2    Aluru, S.3
  • 9
    • 0000552986 scopus 로고    scopus 로고
    • Mutual information relevance networks: Functional genomic clustering using pairwise entropy measurements
    • Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. AJ Butte IS Kohane, Pacific Symposium on Biocomputing 2000 415 426
    • (2000) Pacific Symposium on Biocomputing , pp. 415-426
    • Butte, A.J.1    Kohane, I.S.2
  • 10
    • 15944364151 scopus 로고    scopus 로고
    • An empirical Bayes approach to inferring large-scale gene association networks
    • DOI 10.1093/bioinformatics/bti062
    • An empirical Bayes approach to inferring large-scale gene association networks. J Schäfer K Strimmer, Bioinformatics 2005 21 6 754 764 10.1093/bioinformatics/bti062 15479708 (Pubitemid 40439411)
    • (2005) Bioinformatics , vol.21 , Issue.6 , pp. 754-764
    • Schafer, J.1    Strimmer, K.2
  • 12
    • 0033707946 scopus 로고    scopus 로고
    • Using Bayesian networks to analyze expression data
    • 10.1089/106652700750050961. 11108481
    • Using Bayesian networks to analyze expression data. N Friedman M Linial I Nachman D Pe'er, Journal of Computational Biology 2000 7 601 620 10.1089/106652700750050961 11108481
    • (2000) Journal of Computational Biology , vol.7 , pp. 601-620
    • Friedman, N.1    Linial, M.2    Nachman, I.3    Pe'Er, D.4
  • 13
    • 33751356890 scopus 로고    scopus 로고
    • BNArray: An R package for constructing gene regulatory networks from microarray data by using Bayesian network
    • DOI 10.1093/bioinformatics/btl491
    • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network. X Chen M Chen K Ning, Bioinformatics Application Note 2006 22 2952 2954 (Pubitemid 44811571)
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2952-2954
    • Chen, X.1    Chen, M.2    Ning, K.3
  • 15
    • 38449089398 scopus 로고    scopus 로고
    • Supercomputing with toys: Harnessing the power of NVIDIA 8800GTX and playstation 3 for bioinformatics problems
    • Supercomputing with toys: harnessing the power of NVIDIA 8800GTX and playstation 3 for bioinformatics problems. J Wilson M Dai E Jakupovic S Watson F Meng, Comput Syst Bioinformatics Conf 2007 387 390
    • (2007) Comput Syst Bioinformatics Conf , pp. 387-390
    • Wilson, J.1    Dai, M.2    Jakupovic, E.3    Watson, S.4    Meng, F.5
  • 16
    • 44849137198 scopus 로고    scopus 로고
    • NVIDIA Tesla: A unified graphics and computing architecture
    • NVIDIA Tesla: A unified graphics and computing architecture. E Lindholm J Nickolls S Oberman J Montrym, IEEE Micro 2008 28 40 52
    • (2008) IEEE Micro , vol.28 , pp. 40-52
    • Lindholm, E.1    Nickolls, J.2    Oberman, S.3    Montrym, J.4
  • 17
    • 79960278538 scopus 로고    scopus 로고
    • NvidiaFermiArchitecture. Nvidia, http://www.nvidia.com/object/fermi- architecture.html
    • NvidiaFermiArchitecture
  • 18
    • 43349092363 scopus 로고    scopus 로고
    • CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
    • CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment. SA Manavski G Valle, BMC Bioinformatics 2008 9
    • (2008) BMC Bioinformatics , vol.9
    • Manavski, S.A.1    Valle, G.2
  • 20
    • 74549205661 scopus 로고    scopus 로고
    • CUDASW++: Optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units
    • CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units. Y Liu DL Maskell B Schmidt, BMC Research Notes 2009 2 73
    • (2009) BMC Research Notes , vol.2 , Issue.73
    • Liu, Y.1    Maskell, D.L.2    Schmidt, B.3
  • 21
    • 77951106340 scopus 로고    scopus 로고
    • CUDASW++2.0: Enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions
    • CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions. Y Liu B Schmidt DL Maskell, BMC Research Notes 2010 3 93
    • (2010) BMC Research Notes , vol.3 , Issue.93
    • Liu, Y.1    Schmidt, B.2    Maskell, D.L.3
  • 22
    • 52949096873 scopus 로고    scopus 로고
    • Accelerating Molecular Dynamics simulations using Graphics Processing Units with CUDA
    • 10.1016/j.cpc.2008.05.008
    • Accelerating Molecular Dynamics simulations using Graphics Processing Units with CUDA. W Liu B Schmidt G Voss W Müller-Wittig, Computer Physics Communications 2008 179 634 641 10.1016/j.cpc.2008.05.008
    • (2008) Computer Physics Communications , vol.179 , pp. 634-641
    • Liu, W.1    Schmidt, B.2    Voss, G.3    Müller-Wittig, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.