메뉴 건너뛰기




Volumn 7, Issue 3, 2013, Pages 285-295

A patch-clamp ASIC for nanopore-based DNA analysis

Author keywords

hemolysin nanopore; biomedical application specified integrated circuit (ASIC); dead time compensation; deoxyribonucleic acid (DNA) analysis; gene sequencer; lab on a chip; on chip biosensor; patch clamp technique; single molecule science; solid state nanopore; transimpedance amplifier

Indexed keywords

BIOMEDICAL APPLICATION-SPECIFIED INTEGRATED CIRCUIT (ASIC); DEAD- TIME COMPENSATION; ON CHIPS; PATCH CLAMP TECHNIQUE; SINGLE-MOLECULE; SOLID-STATE NANOPORE; TRANSIMPEDANCE AMPLIFIERS;

EID: 84878283027     PISSN: 19324545     EISSN: None     Source Type: Journal    
DOI: 10.1109/TBCAS.2012.2200893     Document Type: Article
Times cited : (48)

References (48)
  • 1
    • 0017258698 scopus 로고
    • Single-channel currents recorded from membrane of denervated frog muscle fibres
    • Apr.
    • E. E. Neher and B. Sakmann, "Single-channel currents recorded from membrane of denervated frog muscle fibres," Nature, vol. 260, no. 5554, pp. 799-802, Apr. 1976.
    • (1976) Nature , vol.260 , Issue.5554 , pp. 799-802
    • Neher, E.E.1    Sakmann, B.2
  • 2
    • 0019441262 scopus 로고
    • Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches
    • DOI 10.1007/BF00656997
    • O. Hamill, A. Marty, E. Neher, B. Sakmann, and F. J. Sigworth, "Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches," Eur. J. Phys., vol. 391, no. 2, pp. 85-100, 1981. (Pubitemid 11012976)
    • (1981) Pflugers Archiv European Journal of Physiology , vol.391 , Issue.2 , pp. 85-100
    • Hamill, O.P.1    Marty, A.2    Neher, E.3
  • 3
    • 0038329289 scopus 로고    scopus 로고
    • Life's transistors
    • DOI 10.1038/423021a
    • F. J. Sigworth, "Life's transistors," Nature, vol. 423, pp. 21-22, May 2003. (Pubitemid 36569566)
    • (2003) Nature , vol.423 , Issue.6935 , pp. 21-22
    • Sigworth, F.J.1
  • 4
    • 23644446162 scopus 로고    scopus 로고
    • The channelopathies: Novel insights into molecular and genetic mechanisms of human disease
    • DOI 10.1172/JCI26011
    • R. S. Kass, "The channelopathies: Novel insights into molecular and genetic mechanisms of human disease," J. Clin. Invest., vol. 115, no. 8, pp. 1986-1989, Aug. 2005. (Pubitemid 41134133)
    • (2005) Journal of Clinical Investigation , vol.115 , Issue.8 , pp. 1986-1989
    • Kass, R.S.1
  • 5
    • 77956207808 scopus 로고    scopus 로고
    • Patch clamp technique: Review of the current state of the art and potential contributions from nanoengineering
    • Mar.
    • Y. Zhao, S. Inayat, D. A. Dikin, J. Singer, R. Ruoff, and J. B. Troy, "Patch clamp technique: Review of the current state of the art and potential contributions from nanoengineering," J. Nanoeng. Nanosyst., vol. 222, no. 1, pp. 1-11, Mar. 2008.
    • (2008) J. Nanoeng. Nanosyst. , vol.222 , Issue.1 , pp. 1-11
    • Zhao, Y.1    Inayat, S.2    Dikin, D.A.3    Singer, J.4    Ruoff, R.5    Troy, J.B.6
  • 8
    • 80455173836 scopus 로고    scopus 로고
    • Nanopore sensors for nucleic acid analysis
    • B. M. Venkatesan and R. Bashir, "Nanopore sensors for nucleic acid analysis," Nature Nanotechnol., vol. 6, pp. 615-624, 2011.
    • (2011) Nature Nanotechnol. , vol.6 , pp. 615-624
    • Venkatesan, B.M.1    Bashir, R.2
  • 9
    • 38049138721 scopus 로고    scopus 로고
    • Physical approaches to DNA sequencing and detection
    • Jan.
    • M. Zwolak and M. D. Ventra, "Physical approaches to DNA sequencing and detection," Rev. Mod. Phys, vol. 80, no. 1, pp. 141-165, Jan. 2008.
    • (2008) Rev. Mod. Phys , vol.80 , Issue.1 , pp. 141-165
    • Zwolak, M.1    Ventra, M.D.2
  • 10
    • 34248351114 scopus 로고    scopus 로고
    • Solid-state nanopores
    • DOI 10.1038/nnano.2007.27, PII NNANO200727
    • C. Dekker, "Solid-state nanopores," Nature Nanotechnol., vol. 2, pp. 209-215, Mar. 2007. (Pubitemid 46739810)
    • (2007) Nature Nanotechnology , vol.2 , Issue.4 , pp. 209-215
    • Dekker, C.1
  • 11
    • 38049115720 scopus 로고    scopus 로고
    • Solid-state nanopore technologies for nanopore-based DNA analysis
    • Dec.
    • K. Healy, B. Schiedt, and A. Morrison, "Solid-state nanopore technologies for nanopore-based DNA analysis," Nanomed., vol. 2, no. 6, pp. 875-897, Dec. 2007.
    • (2007) Nanomed. , vol.2 , Issue.6 , pp. 875-897
    • Healy, K.1    Schiedt, B.2    Morrison, A.3
  • 12
    • 53649108801 scopus 로고    scopus 로고
    • The potential and challenges of nanopore sequencing
    • Oct.
    • D. Branton et al., "The potential and challenges of nanopore sequencing," Nature Biotechnol., vol. 26, no. 10, pp. 1146-1153, Oct. 2008.
    • (2008) Nature Biotechnol. , vol.26 , Issue.10 , pp. 1146-1153
    • Branton, D.1
  • 14
    • 78650280872 scopus 로고    scopus 로고
    • Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase
    • K. R. Lieberman, G. M. Cherf, M. J. Doody, F. Olasagasti, Y. Kolodji, and M. Akeson, "Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase," J. Amer. Chem. Soc., vol. 132, no. 50, pp. 17961-17972, 2010.
    • (2010) J. Amer. Chem. Soc. , vol.132 , Issue.50 , pp. 17961-17972
    • Lieberman, K.R.1    Cherf, G.M.2    Doody, M.J.3    Olasagasti, F.4    Kolodji, Y.5    Akeson, M.6
  • 15
    • 84859175970 scopus 로고    scopus 로고
    • Automated forward and reverse ratcheting in a nanopore at 5 precision
    • Feb. DOI: 10.1038/nbt. 2147
    • G. M. Cherf, K. R. Lieberman, H. Rashid, C. E. Lam, K. Karplus, and M. Akeson, "Automated forward and reverse ratcheting in a nanopore at 5 precision," Nature Biotechnol., Feb. 14, 2012, DOI: 10.1038/nbt. 2147.
    • Nature Biotechnol , vol.14 , pp. 2012
    • Cherf, G.M.1    Lieberman, K.R.2    Rashid, H.3    Lam, C.E.4    Karplus, K.5    Akeson, M.6
  • 16
    • 80053530116 scopus 로고    scopus 로고
    • Nucleotide discrimination with DNA immobilized in the MspA nanopore
    • Oct.
    • E. A. Manrao, I. M. Derrington, M. Pavlenok, M. Niederweis, and J. J. Gundlach, "Nucleotide discrimination with DNA immobilized in the MspA nanopore," PLoS ONE, vol. 6, no. 10, p. e25723, Oct. 2011.
    • (2011) PLoS ONE , vol.6 , Issue.10
    • Manrao, E.A.1    Derrington, I.M.2    Pavlenok, M.3    Niederweis, M.4    Gundlach, J.J.5
  • 17
    • 79851487297 scopus 로고    scopus 로고
    • An integrated patch-clamp amplifier for ultra-low current measurement on solid-state nanopore device
    • Nov.
    • J. Kim, G. Wang, W. B. Dunbar, and K. Pedrotti, "An integrated patch-clamp amplifier for ultra-low current measurement on solid-state nanopore device," in Proc. IEEE Int. System-on-Chip Design Conf., Nov. 2010, pp. 424-427.
    • (2010) Proc. IEEE Int. System-on-Chip Design Conf , pp. 424-427
    • Kim, J.1    Wang, G.2    Dunbar, W.B.3    Pedrotti, K.4
  • 21
    • 0024596153 scopus 로고
    • A monolithic patch-clamping amplifier with capacitive feedback
    • DOI 10.1016/0165-0270(89)90099-X
    • J. Prakash, J. J. Paulos, and D. N. Jensen, "A monolithic patch-clamping amplifier with capacitive feedback," J. Neurosci. Methods, vol. 27, no. 2, pp. 165-172, Mar. 1989. (Pubitemid 19067244)
    • (1989) Journal of Neuroscience Methods , vol.27 , Issue.2 , pp. 165-172
    • Prakash, J.1    Paulos, J.J.2    Jensen, D.N.3
  • 22
    • 34247258854 scopus 로고    scopus 로고
    • Design of a CMOS potentiostat circuit for electrochemical detector arrays
    • Apr.
    • S. Ayers, K. D. Gillis, M. Lindau, and B. A. Minch, "Design of a CMOS potentiostat circuit for electrochemical detector arrays," IEEE Trans. Circuits Syst. I, Reg. Papers, vol. 54, no. 4, pp. 736-743, Apr. 2007.
    • (2007) IEEE Trans. Circuits Syst. I, Reg. Papers , vol.54 , Issue.4 , pp. 736-743
    • Ayers, S.1    Gillis, K.D.2    Lindau, M.3    Minch, B.A.4
  • 26
    • 34648822352 scopus 로고    scopus 로고
    • A new circuit topology for the realization of very low-noise wide-bandwidth transimpedance amplifier
    • DOI 10.1109/TIM.2007.904566
    • C. Ciofi, F. Crupi, C. Pace, G. Scandurra, and M. Patane, "A new circuit topology for the realization of very low-noise wide-bandwidth transimpedance amplifier," IEEE Trans. Instrum. Meas., vol. 56, no. 5, pp. 1626-1631, Oct. 2007. (Pubitemid 47455885)
    • (2007) IEEE Transactions on Instrumentation and Measurement , vol.56 , Issue.5 , pp. 1626-1631
    • Ciofi, C.1    Crupi, F.2    Pace, C.3    Scandurra, G.4    Patane, M.5
  • 27
    • 66149148735 scopus 로고    scopus 로고
    • Transimpedance amplifier for high sensitivity current measurements on nanodevices
    • May
    • G. Ferrari, F. Gozzini, A. Molari, and M. Sampietro, "Transimpedance amplifier for high sensitivity current measurements on nanodevices," IEEE J. Solid-State Circuits, vol. 44, no. 5, pp. 1609-1616, May 2009.
    • (2009) IEEE J. Solid-State Circuits , vol.44 , Issue.5 , pp. 1609-1616
    • Ferrari, G.1    Gozzini, F.2    Molari, A.3    Sampietro, M.4
  • 28
    • 44649119186 scopus 로고    scopus 로고
    • Nanopore with transverse nanoelectrodes for electrical characterization and sequencing of DNA
    • Jun.
    • B. C. Gierhart, D. G. Howitt, S. J. Chen, Z. Zhu, D. E. Kotecki, R. L. Smith, and S. D. Collins, "Nanopore with transverse nanoelectrodes for electrical characterization and sequencing of DNA," Sens. Actuators B, Chem., vol. 132, no. 2, pp. 593-600, Jun. 2008.
    • (2008) Sens. Actuators B, Chem. , vol.132 , Issue.2 , pp. 593-600
    • Gierhart, B.C.1    Howitt, D.G.2    Chen, S.J.3    Zhu, Z.4    Kotecki, D.E.5    Smith, R.L.6    Collins, S.D.7
  • 31
    • 79960605691 scopus 로고    scopus 로고
    • On-chip patch-clamp sensor for solid-state nanopore applications
    • Jul.
    • J. Kim, K. D. Pedrotti, and W. B. Dunbar, "On-chip patch-clamp sensor for solid-state nanopore applications," Electron. Lett., vol. 47, no. 15, pp. 844-846, Jul. 2011.
    • (2011) Electron. Lett. , vol.47 , Issue.15 , pp. 844-846
    • Kim, J.1    Pedrotti, K.D.2    Dunbar, W.B.3
  • 33
    • 78650808596 scopus 로고    scopus 로고
    • An integrated, low noise patch-clamp amplifier for biological nanopore applications
    • Aug.
    • G. Wang and W. B. Dunbar, "An integrated, low noise patch-clamp amplifier for biological nanopore applications," in Proc. IEEE Int. Eng. Med. Biol. Conf., Aug. 2010, pp. 2718-2721.
    • (2010) Proc. IEEE Int. Eng. Med. Biol. Conf , pp. 2718-2721
    • Wang, G.1    Dunbar, W.B.2
  • 34
    • 66149089087 scopus 로고
    • An improved amplifier for patch-clamp recording
    • F. Offer and B. Clark, "An improved amplifier for patch-clamp recording," J. Biophys., vol. 47, p. 142a, 1985.
    • (1985) J. Biophys. , vol.47
    • Offer, F.1    Clark, B.2
  • 35
    • 78651587394 scopus 로고
    • An integrating patch-clamping amplifier with on-chip capacitors and reset switch
    • J. Prakash, D. N. Jensen, J. J. Paulos, A. O. Grant, and H. C. Strauss, "An integrating patch-clamping amplifier with on-chip capacitors and reset switch," J. Biophys., vol. 51, p. 70a, 1987.
    • (1987) J. Biophys. , vol.51
    • Prakash, J.1    Jensen, D.N.2    Paulos, J.J.3    Grant, A.O.4    Strauss, H.C.5
  • 36
    • 77956005733 scopus 로고    scopus 로고
    • Performance comparison of low current measurement systems for biomedical applications
    • May
    • D. Kim et al., "Performance comparison of low current measurement systems for biomedical applications," in Proc. IEEE Int. Symp. Circuits and Systems, May 2010, pp. 3469-3472.
    • (2010) Proc. IEEE Int. Symp. Circuits and Systems , pp. 3469-3472
    • Kim, D.1
  • 40
    • 0026107482 scopus 로고
    • Two novel fully complementary self-biased CMOS differential amplifiers
    • Feb.
    • M. Bazes, "Two novel fully complementary self-biased CMOS differential amplifiers," IEEE J. Solid-State Circuits, vol. 26, no. 2, pp. 165-168, Feb. 1991.
    • (1991) IEEE J. Solid-State Circuits , vol.26 , Issue.2 , pp. 165-168
    • Bazes, M.1
  • 42
    • 0030286542 scopus 로고    scopus 로고
    • Circuit techniques for reducing the effects of op-amp imperfections: Autozeroing correlated double sampling and chopper stabilization
    • Nov.
    • C. C. Enz and G. C. Temes, "Circuit techniques for reducing the effects of op-amp imperfections: Autozeroing, correlated double sampling, and chopper stabilization," in Proc. IEEE, Nov. 1996, vol. 84, no. 11, pp. 1584-1996.
    • (1996) Proc. IEEE , vol.84 , Issue.11 , pp. 1584-1996
    • Enz, C.C.1    Temes, G.C.2
  • 45
    • 84878285339 scopus 로고    scopus 로고
    • Molecular Devices Inc
    • Molecular Devices, Inc. [Online]. Available: http://www.molecularde- vices.com
  • 47
    • 4143057920 scopus 로고    scopus 로고
    • Atomic layer deposition to fine-tune the surface properties and diameters of fabricated nanopores
    • DOI 10.1021/nl0494001
    • P. Chen, T. Mitsui, D. B. Farmer, J. Golovchenko, R. C. Gordon, and D. Branton, "Atomic layer deposition to fine-tune the surface properties and diameters of fabricated nanopores," Nano Lett., vol. 4, no. 7, pp. 1333-1337, Jun. 2004. (Pubitemid 39092181)
    • (2004) Nano Letters , vol.4 , Issue.7 , pp. 1333-1337
    • Chen, P.1    Mitsui, T.2    Farmer, D.B.3    Golovchenko, J.4    Gordon, R.G.5    Branton, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.