메뉴 건너뛰기




Volumn 8, Issue 5, 2013, Pages

Genome-Wide Analysis of the Salmonella Fis Regulon and Its Regulatory Mechanism on Pathogenicity Islands

Author keywords

[No Author keywords available]

Indexed keywords

COBALAMIN; FACTOR FOR INVERSION STIMULATION; BACTERIAL PROTEIN; TRANSACTIVATOR PROTEIN;

EID: 84878133024     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0064688     Document Type: Article
Times cited : (25)

References (81)
  • 1
    • 0242386460 scopus 로고    scopus 로고
    • Identifying global regulators in transcriptional regulatory networks in bacteria
    • Martinez-Antonio A, Collado-Vides J, (2003) Identifying global regulators in transcriptional regulatory networks in bacteria. Curr Opin Microbiol 6: 482-489.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 482-489
    • Martinez-Antonio, A.1    Collado-Vides, J.2
  • 2
    • 76949089832 scopus 로고    scopus 로고
    • Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
    • Dillon SC, Dorman CJ, (2010) Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat Rev Microbiol 8: 185-195.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 185-195
    • Dillon, S.C.1    Dorman, C.J.2
  • 3
    • 79953676877 scopus 로고    scopus 로고
    • Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli
    • Kahramanoglou C, Seshasayee AS, Prieto AI, Ibberson D, Schmidt S, et al. (2011) Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli. Nucleic Acids Res 39: 2073-2091.
    • (2011) Nucleic Acids Res , vol.39 , pp. 2073-2091
    • Kahramanoglou, C.1    Seshasayee, A.S.2    Prieto, A.I.3    Ibberson, D.4    Schmidt, S.5
  • 4
    • 44849093465 scopus 로고    scopus 로고
    • Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
    • Cho BK, Knight EM, Barrett CL, Palsson BO, (2008) Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. Genome Res 18: 900-910.
    • (2008) Genome Res , vol.18 , pp. 900-910
    • Cho, B.K.1    Knight, E.M.2    Barrett, C.L.3    Palsson, B.O.4
  • 5
    • 64349107871 scopus 로고    scopus 로고
    • DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genes
    • Dorman CJ, Kane KA, (2009) DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genes. FEMS Microbiol Rev 33: 587-592.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 587-592
    • Dorman, C.J.1    Kane, K.A.2
  • 6
    • 0031015563 scopus 로고    scopus 로고
    • Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoter
    • Bokal AJ, Ross W, Gaal T, Johnson RC, Gourse RL, (1997) Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoter. EMBO J 16: 154-162.
    • (1997) EMBO J , vol.16 , pp. 154-162
    • Bokal, A.J.1    Ross, W.2    Gaal, T.3    Johnson, R.C.4    Gourse, R.L.5
  • 7
    • 4344716137 scopus 로고    scopus 로고
    • A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium
    • Kelly A, Goldberg MD, Carroll RK, Danino V, Hinton JC, et al. (2004) A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium. Microbiology 150: 2037-2053.
    • (2004) Microbiology , vol.150 , pp. 2037-2053
    • Kelly, A.1    Goldberg, M.D.2    Carroll, R.K.3    Danino, V.4    Hinton, J.C.5
  • 8
    • 0026470852 scopus 로고
    • The Fis protein: it's not just for DNA inversion anymore
    • Finkel SE, Johnson RC, (1992) The Fis protein: it's not just for DNA inversion anymore. Mol Microbiol 6: 3257-3265.
    • (1992) Mol Microbiol , vol.6 , pp. 3257-3265
    • Finkel, S.E.1    Johnson, R.C.2
  • 9
    • 0035077729 scopus 로고    scopus 로고
    • Genome organisation and chromatin structure in Escherichia coli
    • Ussery D, Larsen TS, Wilkes KT, Friis C, Worning P, et al. (2001) Genome organisation and chromatin structure in Escherichia coli. Biochimie 83: 201-212.
    • (2001) Biochimie , vol.83 , pp. 201-212
    • Ussery, D.1    Larsen, T.S.2    Wilkes, K.T.3    Friis, C.4    Worning, P.5
  • 10
    • 0031866597 scopus 로고    scopus 로고
    • Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC
    • Morett E, Bork P, (1998) Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC. FEBS Lett 433: 108-112.
    • (1998) FEBS Lett , vol.433 , pp. 108-112
    • Morett, E.1    Bork, P.2
  • 11
    • 0035945265 scopus 로고    scopus 로고
    • An architectural role of the Escherichia coli chromatin protein FIS in organising DNA
    • Schneider R, Lurz R, Luder G, Tolksdorf C, Travers A, et al. (2001) An architectural role of the Escherichia coli chromatin protein FIS in organising DNA. Nucleic Acids Res 29: 5107-5114.
    • (2001) Nucleic Acids Res , vol.29 , pp. 5107-5114
    • Schneider, R.1    Lurz, R.2    Luder, G.3    Tolksdorf, C.4    Travers, A.5
  • 12
    • 0025947344 scopus 로고
    • Control of rRNA synthesis in Escherichia coli at increased rrn gene dosage
    • Baracchini E, Bremer H, (1991) Control of rRNA synthesis in Escherichia coli at increased rrn gene dosage. J Biol Chem 266: 11753-11760.
    • (1991) J Biol Chem , vol.266 , pp. 11753-11760
    • Baracchini, E.1    Bremer, H.2
  • 13
    • 33750000118 scopus 로고    scopus 로고
    • Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome
    • Grainger DC, Hurd D, Goldberg MD, Busby SJ, (2006) Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Res 34: 4642-4652.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4642-4652
    • Grainger, D.C.1    Hurd, D.2    Goldberg, M.D.3    Busby, S.J.4
  • 14
    • 0344012447 scopus 로고    scopus 로고
    • Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation
    • Zhi H, Wang X, Cabrera JE, Johnson RC, Jin DJ, (2003) Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation. J Biol Chem 278: 47340-47349.
    • (2003) J Biol Chem , vol.278 , pp. 47340-47349
    • Zhi, H.1    Wang, X.2    Cabrera, J.E.3    Johnson, R.C.4    Jin, D.J.5
  • 15
    • 78649640318 scopus 로고    scopus 로고
    • Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression
    • Browning DF, Grainger DC, Busby SJ, (2010) Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression. Curr Opin Microbiol 13: 773-780.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 773-780
    • Browning, D.F.1    Grainger, D.C.2    Busby, S.J.3
  • 17
    • 0029844676 scopus 로고    scopus 로고
    • FIS is a regulator of metabolism in Escherichia coli
    • Gonzalez-Gil G, Bringmann P, Kahmann R, (1996) FIS is a regulator of metabolism in Escherichia coli. Mol Microbiol 22: 21-29.
    • (1996) Mol Microbiol , vol.22 , pp. 21-29
    • Gonzalez-Gil, G.1    Bringmann, P.2    Kahmann, R.3
  • 18
    • 0346964255 scopus 로고    scopus 로고
    • Modulation of CRP-dependent transcription at the Escherichia coli acsP2 promoter by nucleoprotein complexes: anti-activation by the nucleoid proteins FIS and IHF
    • Browning DF, Beatty CM, Sanstad EA, Gunn KE, Busby SJ, et al. (2004) Modulation of CRP-dependent transcription at the Escherichia coli acsP2 promoter by nucleoprotein complexes: anti-activation by the nucleoid proteins FIS and IHF. Mol Microbiol 51: 241-254.
    • (2004) Mol Microbiol , vol.51 , pp. 241-254
    • Browning, D.F.1    Beatty, C.M.2    Sanstad, E.A.3    Gunn, K.E.4    Busby, S.J.5
  • 19
    • 0037084067 scopus 로고    scopus 로고
    • Transcriptional regulation of fis operon involves a module of multiple coupled promoters
    • Nasser W, Rochman M, Muskhelishvili G, (2002) Transcriptional regulation of fis operon involves a module of multiple coupled promoters. EMBO J 21: 715-724.
    • (2002) EMBO J , vol.21 , pp. 715-724
    • Nasser, W.1    Rochman, M.2    Muskhelishvili, G.3
  • 20
    • 33846594772 scopus 로고    scopus 로고
    • Differential regulation of Escherichia coli topoisomerase I by Fis
    • Weinstein-Fischer D, Altuvia S, (2007) Differential regulation of Escherichia coli topoisomerase I by Fis. Mol Microbiol 63: 1131-1144.
    • (2007) Mol Microbiol , vol.63 , pp. 1131-1144
    • Weinstein-Fischer, D.1    Altuvia, S.2
  • 21
    • 48449107161 scopus 로고    scopus 로고
    • Downregulation of the Escherichia coli guaB promoter by FIS
    • Husnain SI, Thomas MS, (2008) Downregulation of the Escherichia coli guaB promoter by FIS. Microbiology 154: 1729-1738.
    • (2008) Microbiology , vol.154 , pp. 1729-1738
    • Husnain, S.I.1    Thomas, M.S.2
  • 22
    • 77950934795 scopus 로고    scopus 로고
    • The shape of the DNA minor groove directs binding by the DNA-bending protein Fis
    • Stella S, Cascio D, Johnson RC, (2010) The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev 24: 814-826.
    • (2010) Genes Dev , vol.24 , pp. 814-826
    • Stella, S.1    Cascio, D.2    Johnson, R.C.3
  • 23
    • 34548755108 scopus 로고    scopus 로고
    • Correlation between binding rate constants and individual information of E. coli Fis binding sites
    • Shultzaberger RK, Roberts LR, Lyakhov IG, Sidorov IA, Stephen AG, et al. (2007) Correlation between binding rate constants and individual information of E. coli Fis binding sites. Nucleic Acids Res 35: 5275-5283.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5275-5283
    • Shultzaberger, R.K.1    Roberts, L.R.2    Lyakhov, I.G.3    Sidorov, I.A.4    Stephen, A.G.5
  • 24
    • 0035950182 scopus 로고    scopus 로고
    • Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
    • McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, et al. (2001) Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413: 852-856.
    • (2001) Nature , vol.413 , pp. 852-856
    • McClelland, M.1    Sanderson, K.E.2    Spieth, J.3    Clifton, S.W.4    Latreille, P.5
  • 25
    • 63749110404 scopus 로고    scopus 로고
    • Control of Salmonella pathogenicity island-2 gene expression
    • Fass E, Groisman EA, (2009) Control of Salmonella pathogenicity island-2 gene expression. Curr Opin Microbiol 12: 199-204.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 199-204
    • Fass, E.1    Groisman, E.A.2
  • 26
    • 79953059399 scopus 로고    scopus 로고
    • DNA supercoiling is differentially regulated by environmental factors and FIS in Escherichia coli and Salmonella enterica
    • Cameron AD, Stoebel DM, Dorman CJ, (2011) DNA supercoiling is differentially regulated by environmental factors and FIS in Escherichia coli and Salmonella enterica. Mol Microbiol 80: 85-101.
    • (2011) Mol Microbiol , vol.80 , pp. 85-101
    • Cameron, A.D.1    Stoebel, D.M.2    Dorman, C.J.3
  • 27
    • 0034065133 scopus 로고    scopus 로고
    • Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis
    • Weinstein-Fischer D, Elgrably-Weiss M, Altuvia S, (2000) Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis. Mol Microbiol 35: 1413-1420.
    • (2000) Mol Microbiol , vol.35 , pp. 1413-1420
    • Weinstein-Fischer, D.1    Elgrably-Weiss, M.2    Altuvia, S.3
  • 28
    • 0030668269 scopus 로고    scopus 로고
    • FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli
    • Schneider R, Travers A, Muskhelishvili G, (1997) FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli. Mol Microbiol 26: 519-530.
    • (1997) Mol Microbiol , vol.26 , pp. 519-530
    • Schneider, R.1    Travers, A.2    Muskhelishvili, G.3
  • 29
    • 0034893772 scopus 로고    scopus 로고
    • Role of the nucleoid-associated protein Fis in the regulation of virulence properties of enteropathogenic Escherichia coli
    • Goldberg MD, Johnson M, Hinton JC, Williams PH, (2001) Role of the nucleoid-associated protein Fis in the regulation of virulence properties of enteropathogenic Escherichia coli. Mol Microbiol 41: 549-559.
    • (2001) Mol Microbiol , vol.41 , pp. 549-559
    • Goldberg, M.D.1    Johnson, M.2    Hinton, J.C.3    Williams, P.H.4
  • 30
    • 0035181320 scopus 로고    scopus 로고
    • Fis, a DNA nucleoid-associated protein, is involved in Salmonella typhimurium SPI-1 invasion gene expression
    • Wilson RL, Libby SJ, Freet AM, Boddicker JD, Fahlen TF, et al. (2001) Fis, a DNA nucleoid-associated protein, is involved in Salmonella typhimurium SPI-1 invasion gene expression. Mol Microbiol 39: 79-88.
    • (2001) Mol Microbiol , vol.39 , pp. 79-88
    • Wilson, R.L.1    Libby, S.J.2    Freet, A.M.3    Boddicker, J.D.4    Fahlen, T.F.5
  • 32
    • 33846842428 scopus 로고    scopus 로고
    • Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium
    • Ellermeier JR, Slauch JM, (2007) Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium. Curr Opin Microbiol 10: 24-29.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 24-29
    • Ellermeier, J.R.1    Slauch, J.M.2
  • 33
    • 0032765129 scopus 로고    scopus 로고
    • Differential regulation of Salmonella typhimurium type III secreted proteins by pathogenicity island 1 (SPI-1)-encoded transcriptional activators InvF and HilA
    • Eichelberg K, Galan JE, (1999) Differential regulation of Salmonella typhimurium type III secreted proteins by pathogenicity island 1 (SPI-1)-encoded transcriptional activators InvF and HilA. Infect Immun 67: 4099-4105.
    • (1999) Infect Immun , vol.67 , pp. 4099-4105
    • Eichelberg, K.1    Galan, J.E.2
  • 34
    • 0038354822 scopus 로고    scopus 로고
    • Dual regulation by phospho-OmpR of ssrA/B gene expression in Salmonella pathogenicity island 2
    • Feng X, Oropeza R, Kenney LJ, (2003) Dual regulation by phospho-OmpR of ssrA/B gene expression in Salmonella pathogenicity island 2. Mol Microbiol 48: 1131-1143.
    • (2003) Mol Microbiol , vol.48 , pp. 1131-1143
    • Feng, X.1    Oropeza, R.2    Kenney, L.J.3
  • 35
    • 74549125756 scopus 로고    scopus 로고
    • Virulence potential of five major pathogenicity islands (SPI-1 to SPI-5) of Salmonella enterica serovar Enteritidis for chickens
    • Rychlik I, Karasova D, Sebkova A, Volf J, Sisak F, et al. (2009) Virulence potential of five major pathogenicity islands (SPI-1 to SPI-5) of Salmonella enterica serovar Enteritidis for chickens. BMC Microbiol 9: 268.
    • (2009) BMC Microbiol , vol.9 , pp. 268
    • Rychlik, I.1    Karasova, D.2    Sebkova, A.3    Volf, J.4    Sisak, F.5
  • 36
    • 54049111835 scopus 로고    scopus 로고
    • Cooperation of Salmonella pathogenicity islands 1 and 4 is required to breach epithelial barriers
    • Gerlach RG, Claudio N, Rohde M, Jackel D, Wagner C, et al. (2008) Cooperation of Salmonella pathogenicity islands 1 and 4 is required to breach epithelial barriers. Cell Microbiol 10: 2364-2376.
    • (2008) Cell Microbiol , vol.10 , pp. 2364-2376
    • Gerlach, R.G.1    Claudio, N.2    Rohde, M.3    Jackel, D.4    Wagner, C.5
  • 39
    • 84859235790 scopus 로고    scopus 로고
    • A fundamental regulatory mechanism operating through OmpR and DNA topology controls expression of Salmonella pathogenicity islands SPI-1 and SPI-2
    • Cameron AD, Dorman CJ, (2012) A fundamental regulatory mechanism operating through OmpR and DNA topology controls expression of Salmonella pathogenicity islands SPI-1 and SPI-2. PLoS Genet 8: e1002615.
    • (2012) PLoS Genet , vol.8
    • Cameron, A.D.1    Dorman, C.J.2
  • 40
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640-6645.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 41
    • 0030853953 scopus 로고    scopus 로고
    • Direct interaction of endothelial nitric-oxide synthase and caveolin-1 inhibits synthase activity
    • Ju H, Zou R, Venema VJ, Venema RC, (1997) Direct interaction of endothelial nitric-oxide synthase and caveolin-1 inhibits synthase activity. J Biol Chem 272: 18522-18525.
    • (1997) J Biol Chem , vol.272 , pp. 18522-18525
    • Ju, H.1    Zou, R.2    Venema, V.J.3    Venema, R.C.4
  • 42
    • 0025782890 scopus 로고
    • Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in E.coli
    • Wang RF, Kushner SR, (1991) Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in E.coli. Gene 100: 195-199.
    • (1991) Gene , vol.100 , pp. 195-199
    • Wang, R.F.1    Kushner, S.R.2
  • 43
    • 78249248047 scopus 로고    scopus 로고
    • An incomplete TCA cycle increases survival of Salmonella Typhimurium during infection of resting and activated murine macrophages
    • Bowden SD, Ramachandran VK, Knudsen GM, Hinton JC, Thompson A, (2010) An incomplete TCA cycle increases survival of Salmonella Typhimurium during infection of resting and activated murine macrophages. PLoS One 5: e13871.
    • (2010) PLoS One , vol.5
    • Bowden, S.D.1    Ramachandran, V.K.2    Knudsen, G.M.3    Hinton, J.C.4    Thompson, A.5
  • 44
    • 0031007756 scopus 로고    scopus 로고
    • Non-invasive Salmonella typhimurium mutants are avirulent because of an inability to enter and destroy M cells of ileal Peyer's patches
    • Penheiter KL, Mathur N, Giles D, Fahlen T, Jones BD, (1997) Non-invasive Salmonella typhimurium mutants are avirulent because of an inability to enter and destroy M cells of ileal Peyer's patches. Mol Microbiol 24: 697-709.
    • (1997) Mol Microbiol , vol.24 , pp. 697-709
    • Penheiter, K.L.1    Mathur, N.2    Giles, D.3    Fahlen, T.4    Jones, B.D.5
  • 45
    • 0043166919 scopus 로고    scopus 로고
    • A sensitive two-color electrophoretic mobility shift assay for detecting both nucleic acids and protein in gels
    • Jing D, Agnew J, Patton WF, Hendrickson J, Beechem JM, (2003) A sensitive two-color electrophoretic mobility shift assay for detecting both nucleic acids and protein in gels. Proteomics 3: 1172-1180.
    • (2003) Proteomics , vol.3 , pp. 1172-1180
    • Jing, D.1    Agnew, J.2    Patton, W.F.3    Hendrickson, J.4    Beechem, J.M.5
  • 47
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
    • Cox MP, Peterson DA, Biggs PJ, (2010) SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 11: 485.
    • (2010) BMC Bioinformatics , vol.11 , pp. 485
    • Cox, M.P.1    Peterson, D.A.2    Biggs, P.J.3
  • 48
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL, (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 51
    • 33747823564 scopus 로고    scopus 로고
    • MEME: discovering and analyzing DNA and protein sequence motifs
    • Bailey TL, Williams N, Misleh C, Li WW, (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34: W369-W373.
    • (2006) Nucleic Acids Res , vol.34
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 52
    • 79958117256 scopus 로고    scopus 로고
    • MEME-ChIP: motif analysis of large DNA datasets
    • Machanick P, Bailey TL, (2011) MEME-ChIP: motif analysis of large DNA datasets. Bioinformatics 27: 1696-1697.
    • (2011) Bioinformatics , vol.27 , pp. 1696-1697
    • Machanick, P.1    Bailey, T.L.2
  • 53
    • 0028953095 scopus 로고
    • Sequence, regulation, and functions of Fis in Salmonella typhimurium
    • Osuna R, Lienau D, Hughes KT, Johnson RC, (1995) Sequence, regulation, and functions of Fis in Salmonella typhimurium. J Bacteriol 177: 2021-2032.
    • (1995) J Bacteriol , vol.177 , pp. 2021-2032
    • Osuna, R.1    Lienau, D.2    Hughes, K.T.3    Johnson, R.C.4
  • 54
    • 0029147255 scopus 로고
    • The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coli
    • Ramseier TM, Bledig S, Michotey V, Feghali R, Saier MJ, (1995) The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coli. Mol Microbiol 16: 1157-1169.
    • (1995) Mol Microbiol , vol.16 , pp. 1157-1169
    • Ramseier, T.M.1    Bledig, S.2    Michotey, V.3    Feghali, R.4    Saier, M.J.5
  • 55
    • 0023461779 scopus 로고
    • The organization of the fuc regulon specifying L-fucose dissimilation in Escherichia coli K12 as determined by gene cloning
    • Chen YM, Zhu Y, Lin EC, (1987) The organization of the fuc regulon specifying L-fucose dissimilation in Escherichia coli K12 as determined by gene cloning. Mol Gen Genet 210: 331-337.
    • (1987) Mol Gen Genet , vol.210 , pp. 331-337
    • Chen, Y.M.1    Zhu, Y.2    Lin, E.C.3
  • 56
    • 0028132187 scopus 로고
    • The FlhD/FlhC complex, a transcriptional activator of the Escherichia coli flagellar class II operons
    • Liu X, Matsumura P, (1994) The FlhD/FlhC complex, a transcriptional activator of the Escherichia coli flagellar class II operons. J Bacteriol 176: 7345-7351.
    • (1994) J Bacteriol , vol.176 , pp. 7345-7351
    • Liu, X.1    Matsumura, P.2
  • 57
    • 0024279303 scopus 로고
    • Positive and negative regulators for glucitol (gut) operon expression in Escherichia coli
    • Yamada M, Saier MJ, (1988) Positive and negative regulators for glucitol (gut) operon expression in Escherichia coli. J Mol Biol 203: 569-583.
    • (1988) J Mol Biol , vol.203 , pp. 569-583
    • Yamada, M.1    Saier, M.J.2
  • 58
    • 16844384950 scopus 로고    scopus 로고
    • Catabolite repression of the propionate catabolic genes in Escherichia coli and Salmonella enterica: evidence for involvement of the cyclic AMP receptor protein
    • Lee SK, Newman JD, Keasling JD, (2005) Catabolite repression of the propionate catabolic genes in Escherichia coli and Salmonella enterica: evidence for involvement of the cyclic AMP receptor protein. J Bacteriol 187: 2793-2800.
    • (2005) J Bacteriol , vol.187 , pp. 2793-2800
    • Lee, S.K.1    Newman, J.D.2    Keasling, J.D.3
  • 59
    • 0021276634 scopus 로고
    • Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic growth conditions
    • Jeter RM, Olivera BM, Roth JR, (1984) Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic growth conditions. J Bacteriol 159: 206-213.
    • (1984) J Bacteriol , vol.159 , pp. 206-213
    • Jeter, R.M.1    Olivera, B.M.2    Roth, J.R.3
  • 60
    • 0030023661 scopus 로고    scopus 로고
    • Salmonella typhimurium cobalamin (vitamin B12) biosynthetic genes: functional studies in S. typhimurium and Escherichia coli
    • Raux E, Lanois A, Levillayer F, Warren MJ, Brody E, et al. (1996) Salmonella typhimurium cobalamin (vitamin B12) biosynthetic genes: functional studies in S. typhimurium and Escherichia coli. J Bacteriol 178: 753-767.
    • (1996) J Bacteriol , vol.178 , pp. 753-767
    • Raux, E.1    Lanois, A.2    Levillayer, F.3    Warren, M.J.4    Brody, E.5
  • 61
    • 0027154584 scopus 로고
    • Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium
    • Roth JR, Lawrence JG, Rubenfield M, Kieffer-Higgins S, Church GM, (1993) Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol 175: 3303-3316.
    • (1993) J Bacteriol , vol.175 , pp. 3303-3316
    • Roth, J.R.1    Lawrence, J.G.2    Rubenfield, M.3    Kieffer-Higgins, S.4    Church, G.M.5
  • 63
    • 0026503401 scopus 로고
    • A single regulatory gene integrates control of vitamin B12 synthesis and propanediol degradation
    • Bobik TA, Ailion M, Roth JR, (1992) A single regulatory gene integrates control of vitamin B12 synthesis and propanediol degradation. J Bacteriol 174: 2253-2266.
    • (1992) J Bacteriol , vol.174 , pp. 2253-2266
    • Bobik, T.A.1    Ailion, M.2    Roth, J.R.3
  • 64
    • 33845713571 scopus 로고    scopus 로고
    • The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
    • Sittka A, Pfeiffer V, Tedin K, Vogel J, (2007) The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol 63: 193-217.
    • (2007) Mol Microbiol , vol.63 , pp. 193-217
    • Sittka, A.1    Pfeiffer, V.2    Tedin, K.3    Vogel, J.4
  • 65
    • 33749571323 scopus 로고    scopus 로고
    • The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella
    • Thompson A, Rolfe MD, Lucchini S, Schwerk P, Hinton JC, et al. (2006) The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella. J Biol Chem 281: 30112-30121.
    • (2006) J Biol Chem , vol.281 , pp. 30112-30121
    • Thompson, A.1    Rolfe, M.D.2    Lucchini, S.3    Schwerk, P.4    Hinton, J.C.5
  • 66
    • 0034933621 scopus 로고    scopus 로고
    • AraC/XylS family members, HilC and HilD, directly bind and derepress the Salmonella typhimurium hilA promoter
    • Schechter LM, Lee CA, (2001) AraC/XylS family members, HilC and HilD, directly bind and derepress the Salmonella typhimurium hilA promoter. Mol Microbiol 40: 1289-1299.
    • (2001) Mol Microbiol , vol.40 , pp. 1289-1299
    • Schechter, L.M.1    Lee, C.A.2
  • 67
    • 0037244545 scopus 로고    scopus 로고
    • AraC/XylS family members, HilD and HilC, directly activate virulence gene expression independently of HilA in Salmonella typhimurium
    • Akbar S, Schechter LM, Lostroh CP, Lee CA, (2003) AraC/XylS family members, HilD and HilC, directly activate virulence gene expression independently of HilA in Salmonella typhimurium. Mol Microbiol 47: 715-728.
    • (2003) Mol Microbiol , vol.47 , pp. 715-728
    • Akbar, S.1    Schechter, L.M.2    Lostroh, C.P.3    Lee, C.A.4
  • 68
    • 0029416946 scopus 로고
    • hilA is a novel ompR/toxR family member that activates the expression of Salmonella typhimurium invasion genes
    • Bajaj V, Hwang C, Lee CA, (1995) hilA is a novel ompR/toxR family member that activates the expression of Salmonella typhimurium invasion genes. Mol Microbiol 18: 715-727.
    • (1995) Mol Microbiol , vol.18 , pp. 715-727
    • Bajaj, V.1    Hwang, C.2    Lee, C.A.3
  • 69
    • 34447321831 scopus 로고    scopus 로고
    • The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS
    • Walthers D, Carroll RK, Navarre WW, Libby SJ, Fang FC, et al. (2007) The response regulator SsrB activates expression of diverse Salmonella pathogenicity island 2 promoters and counters silencing by the nucleoid-associated protein H-NS. Mol Microbiol 65: 477-493.
    • (2007) Mol Microbiol , vol.65 , pp. 477-493
    • Walthers, D.1    Carroll, R.K.2    Navarre, W.W.3    Libby, S.J.4    Fang, F.C.5
  • 70
    • 21544452536 scopus 로고    scopus 로고
    • SlyA regulates function of Salmonella pathogenicity island 2 (SPI-2) and expression of SPI-2-associated genes
    • Linehan SA, Rytkonen A, Yu XJ, Liu M, Holden DW, (2005) SlyA regulates function of Salmonella pathogenicity island 2 (SPI-2) and expression of SPI-2-associated genes. Infect Immun 73: 4354-4362.
    • (2005) Infect Immun , vol.73 , pp. 4354-4362
    • Linehan, S.A.1    Rytkonen, A.2    Yu, X.J.3    Liu, M.4    Holden, D.W.5
  • 71
    • 22644442538 scopus 로고    scopus 로고
    • HilD, HilC and RtsA constitute a feed forward loop that controls expression of the SPI1 type three secretion system regulator hilA in Salmonella enterica serovar Typhimurium
    • Ellermeier CD, Ellermeier JR, Slauch JM, (2005) HilD, HilC and RtsA constitute a feed forward loop that controls expression of the SPI1 type three secretion system regulator hilA in Salmonella enterica serovar Typhimurium. Mol Microbiol 57: 691-705.
    • (2005) Mol Microbiol , vol.57 , pp. 691-705
    • Ellermeier, C.D.1    Ellermeier, J.R.2    Slauch, J.M.3
  • 72
    • 66449134323 scopus 로고    scopus 로고
    • Structural and functional analysis of the C-terminal DNA binding domain of the Salmonella typhimurium SPI-2 response regulator SsrB
    • Carroll RK, Liao X, Morgan LK, Cicirelli EM, Li Y, et al. (2009) Structural and functional analysis of the C-terminal DNA binding domain of the Salmonella typhimurium SPI-2 response regulator SsrB. J Biol Chem 284: 12008-12019.
    • (2009) J Biol Chem , vol.284 , pp. 12008-12019
    • Carroll, R.K.1    Liao, X.2    Morgan, L.K.3    Cicirelli, E.M.4    Li, Y.5
  • 73
    • 77952820341 scopus 로고    scopus 로고
    • Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism
    • Dillon SC, Cameron AD, Hokamp K, Lucchini S, Hinton JC, et al. (2010) Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism. Mol Microbiol 76: 1250-1265.
    • (2010) Mol Microbiol , vol.76 , pp. 1250-1265
    • Dillon, S.C.1    Cameron, A.D.2    Hokamp, K.3    Lucchini, S.4    Hinton, J.C.5
  • 74
    • 47249152834 scopus 로고    scopus 로고
    • The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions
    • Shimada T, Ishihama A, Busby SJ, Grainger DC, (2008) The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. Nucleic Acids Res 36: 3950-3955.
    • (2008) Nucleic Acids Res , vol.36 , pp. 3950-3955
    • Shimada, T.1    Ishihama, A.2    Busby, S.J.3    Grainger, D.C.4
  • 75
    • 33746008173 scopus 로고    scopus 로고
    • Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
    • Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, et al. (2006) Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 313: 236-238.
    • (2006) Science , vol.313 , pp. 236-238
    • Navarre, W.W.1    Porwollik, S.2    Wang, Y.3    McClelland, M.4    Rosen, H.5
  • 77
    • 33751534830 scopus 로고    scopus 로고
    • The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting
    • Reppas NB, Wade JT, Church GM, Struhl K, (2006) The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting. Mol Cell 24: 747-757.
    • (2006) Mol Cell , vol.24 , pp. 747-757
    • Reppas, N.B.1    Wade, J.T.2    Church, G.M.3    Struhl, K.4
  • 78
    • 3142774839 scopus 로고    scopus 로고
    • Topological domain structure of the Escherichia coli chromosome
    • Postow L, Hardy CD, Arsuaga J, Cozzarelli NR, (2004) Topological domain structure of the Escherichia coli chromosome. Genes Dev 18: 1766-1779.
    • (2004) Genes Dev , vol.18 , pp. 1766-1779
    • Postow, L.1    Hardy, C.D.2    Arsuaga, J.3    Cozzarelli, N.R.4
  • 79
    • 0025334009 scopus 로고
    • The ability of Salmonella to enter mammalian cells is affected by bacterial growth state
    • Lee CA, Falkow S, (1990) The ability of Salmonella to enter mammalian cells is affected by bacterial growth state. Proc Natl Acad Sci U S A 87: 4304-4308.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 4304-4308
    • Lee, C.A.1    Falkow, S.2
  • 80
    • 50849105413 scopus 로고    scopus 로고
    • Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
    • Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, et al. (2008) Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet 4: e1000163.
    • (2008) PLoS Genet , vol.4
    • Sittka, A.1    Lucchini, S.2    Papenfort, K.3    Sharma, C.M.4    Rolle, K.5
  • 81
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • Lobry JR, (1996) Asymmetric substitution patterns in the two DNA strands of bacteria. Mol Biol Evol 13: 660-665.
    • (1996) Mol Biol Evol , vol.13 , pp. 660-665
    • Lobry, J.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.