-
1
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V, Sundaresan V (2005) Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res 15: 78-91.
-
(2005)
Genome Res
, vol.15
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
Archer-Evans, S.4
Manocha, V.5
Vance, V.6
Sundaresan, V.7
-
2
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen E, Xie ZX, Gustafson AM, Sung GH, Spatafora JW, Carrington JC (2004) Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat Genet 36: 1282-1290.
-
(2004)
Nat Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.X.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
3
-
-
22144457368
-
Antiquity of microRNAs and their targets in land plants
-
Axtell MJ, Bartel DP (2005) Antiquity of microRNAs and their targets in land plants. Plant Cell 17: 1658-1673.
-
(2005)
Plant Cell
, vol.17
, pp. 1658-1673
-
-
Axtell, M.J.1
Bartel, D.P.2
-
4
-
-
79955379930
-
Vive la différence: biogenesis and evolution of microRNAs in plants and animals
-
Axtell MJ, Westholm JO, Lai EC (2011) Vive la différence: biogenesis and evolution of microRNAs in plants and animals. Genome Biol 12: 221.
-
(2011)
Genome Biol
, vol.12
, pp. 221
-
-
Axtell, M.J.1
Westholm, J.O.2
Lai, E.C.3
-
5
-
-
0347444723
-
MicroRNAs: Genomics, Biogenesis, Mechanism, and Function
-
Bartel D (2004) MicroRNAs: Genomics, Biogenesis, Mechanism, and Function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.1
-
6
-
-
23844550243
-
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs
-
Baumberger N, Baulcombe DC (2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci USA 102: 11928-11933.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
7
-
-
1642380225
-
The role of GRAS proteins in plant signal transduction and development
-
Bolle C (2004) The role of GRAS proteins in plant signal transduction and development. Planta 218: 683-692.
-
(2004)
Planta
, vol.218
, pp. 683-692
-
-
Bolle, C.1
-
8
-
-
3843089328
-
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identify important target genes
-
Bonnet E, Wuyts J, Rouze P, van de Peer Y (2004) Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identify important target genes. Proc Natl Acad Sci USA 101: 11511-11516.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11511-11516
-
-
Bonnet, E.1
Wuyts, J.2
Rouze, P.3
van de Peer, Y.4
-
9
-
-
44349155320
-
MicroRNA166 controls root and nodule development in Medicago truncatula
-
Boualem A, Laporte P, Jovanovic M, Laffont C, Plet J, Combier JP, Niebel A, Crespi M, Frugier F (2008) MicroRNA166 controls root and nodule development in Medicago truncatula. Plant J 54: 876-887.
-
(2008)
Plant J
, vol.54
, pp. 876-887
-
-
Boualem, A.1
Laporte, P.2
Jovanovic, M.3
Laffont, C.4
Plet, J.5
Combier, J.P.6
Niebel, A.7
Crespi, M.8
Frugier, F.9
-
10
-
-
33745726562
-
Shoot Meristem Function and Leaf Polarity: The role of class III HD-ZIP genes
-
Byrne ME (2006) Shoot Meristem Function and Leaf Polarity: The role of class III HD-ZIP genes. PLoS Genet 2(6): e89.
-
(2006)
PLoS Genet
, vol.2
, Issue.6
-
-
Byrne, M.E.1
-
11
-
-
77952679512
-
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
-
Carlsbecker A, Lee JY, Roberts CJ et al (2010) Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 465: 316-321.
-
(2010)
Nature
, vol.465
, pp. 316-321
-
-
Carlsbecker, A.1
Lee, J.Y.2
Roberts, C.J.3
-
12
-
-
48449084852
-
RNALogo: a new approach to display structural RNA alignment
-
Chang TH, Horng JT, Huang HD (2008) RNALogo: a new approach to display structural RNA alignment. Nucleic Acids Res 36: W91-W96.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Chang, T.H.1
Horng, J.T.2
Huang, H.D.3
-
13
-
-
26944437949
-
microRNA biogenesis and function in plants
-
Chen X (2005) microRNA biogenesis and function in plants. FEBS Lett 579: 5923-5931.
-
(2005)
FEBS Lett
, vol.579
, pp. 5923-5931
-
-
Chen, X.1
-
14
-
-
29144470346
-
Real-time quantification of microRNAs by stem-loop RT-PCR
-
Chen C, Ridzon D, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, Lao KQ, Livak KJ, Guegler KJ (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33: 179.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 179
-
-
Chen, C.1
Ridzon, D.2
Broomer, A.J.3
Zhou, Z.4
Lee, D.H.5
Nguyen, J.T.6
Barbisin, M.7
Xu, N.L.8
Mahuvakar, V.R.9
Andersen, M.R.10
Lao, K.Q.11
Livak, K.J.12
Guegler, K.J.13
-
15
-
-
33645509923
-
Evolution of Arabidopsis microRNA families through duplication events
-
Christopher M, Lincoln S, Doreen W (2006) Evolution of Arabidopsis microRNA families through duplication events. Genome Res 16: 510-519.
-
(2006)
Genome Res
, vol.16
, pp. 510-519
-
-
Christopher, M.1
Lincoln, S.2
Doreen, W.3
-
16
-
-
77955418697
-
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
-
Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC (2010) Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol 17: 997-1003.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 997-1003
-
-
Cuperus, J.T.1
Carbonell, A.2
Fahlgren, N.3
Garcia-Ruiz, H.4
Burke, R.T.5
Takeda, A.6
Sullivan, C.M.7
Gilbert, S.D.8
Montgomery, T.A.9
Carrington, J.C.10
-
17
-
-
79953086307
-
Evolution and functional diversification of MIRNA genes
-
Cuperus JT, Fahlgren N, Carrington JC (2011) Evolution and functional diversification of MIRNA genes. Plant Cell 23: 431-442.
-
(2011)
Plant Cell
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
18
-
-
79959967431
-
psRNATarget: a plant small RNA target analysis server
-
Dai X, Zhao PX (2011) psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res 39: w155-w159.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Dai, X.1
Zhao, P.X.2
-
19
-
-
57049169777
-
Evolution of Arabidopsis thaliana microRNAs from random sequences
-
De Felippes FF, Schneeberger K, Dezulian T, Huson DH, Weigel D (2008) Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA 14: 2455-2459.
-
(2008)
Rna
, vol.14
, pp. 2455-2459
-
-
De Felippes, F.F.1
Schneeberger, K.2
Dezulian, T.3
Huson, D.H.4
Weigel, D.5
-
20
-
-
32144438833
-
Identification of plant microRNA homologs
-
Dezulian T, Remmert M, Palatnik JF, Weigel D, Huson DH (2006) Identification of plant microRNA homologs. Bioinformatics 22: 359-360.
-
(2006)
Bioinformatics
, vol.22
, pp. 359-360
-
-
Dezulian, T.1
Remmert, M.2
Palatnik, J.F.3
Weigel, D.4
Huson, D.H.5
-
21
-
-
82155164153
-
High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.)
-
Donaire L, Pedrola L, de la Rosa R, Llave C (2011) High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.). PLoS One 6: e27916.
-
(2011)
PLoS One
, vol.6
-
-
Donaire, L.1
Pedrola, L.2
de la Rosa, R.3
Llave, C.4
-
22
-
-
0142072737
-
Radial patterning of Arabidopsis shoots by Class III HD-ZIP and KANADI genes
-
Emery JF, Floyd SK, Alvarez J, Eshed Y, Hawker NP, Izhaki A (2003) Radial patterning of Arabidopsis shoots by Class III HD-ZIP and KANADI genes. Curr Biol 13: 1768-1774.
-
(2003)
Curr Biol
, vol.13
, pp. 1768-1774
-
-
Emery, J.F.1
Floyd, S.K.2
Alvarez, J.3
Eshed, Y.4
Hawker, N.P.5
Izhaki, A.6
-
23
-
-
34047136677
-
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
-
Fattash I, Reski BR, Hess WR, Frank W (2007) Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. BMC Plant Biol 7: 13.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 13
-
-
Fattash, I.1
Reski, B.R.2
Hess, W.R.3
Frank, W.4
-
24
-
-
1842484780
-
Ancient microRNA regulation of gene expression in land plants
-
Floyd SK, Bowman JL (2004) Ancient microRNA regulation of gene expression in land plants. Nature 428: 485-486.
-
(2004)
Nature
, vol.428
, pp. 485-486
-
-
Floyd, S.K.1
Bowman, J.L.2
-
25
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ (2006) miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 34: D140-D144.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
26
-
-
4444236118
-
Underground Polarity: Roles for Class III HD-Zip and KANADI genes in Arabidopsis root development
-
Hawker NP, Bowman JL (2004) Underground Polarity: Roles for Class III HD-Zip and KANADI genes in Arabidopsis root development. Plant Physiol 135: 2261-2270.
-
(2004)
Plant Physiol
, vol.135
, pp. 2261-2270
-
-
Hawker, N.P.1
Bowman, J.L.2
-
27
-
-
84865580660
-
Characterization of the small RNA component of leaves and fruits from four different cucurbit species
-
Jagadeeswaran G, Nimmakayala P, Zheng Y, Gowdu K, Reddy UK, Sunkar R (2012) Characterization of the small RNA component of leaves and fruits from four different cucurbit species. BMC Genom 13: 329.
-
(2012)
BMC Genom
, vol.13
, pp. 329
-
-
Jagadeeswaran, G.1
Nimmakayala, P.2
Zheng, Y.3
Gowdu, K.4
Reddy, U.K.5
Sunkar, R.6
-
28
-
-
0013187924
-
Phylogeny and patterns of floral diversity in the genus Piper (Piperaceae)
-
Jaramillo MA, Manos PS (2001) Phylogeny and patterns of floral diversity in the genus Piper (Piperaceae). Am J Bot 88: 706-716.
-
(2001)
Am J Bot
, vol.88
, pp. 706-716
-
-
Jaramillo, M.A.1
Manos, P.S.2
-
29
-
-
74049114522
-
Biotic stress-associated microRNAs: identification, detection, regulation, and functional analysis
-
Jay F, Renou JP, Voinnet O, Navarro L (2010) Biotic stress-associated microRNAs: identification, detection, regulation, and functional analysis. Methods Mol Biol 592: 183-202.
-
(2010)
Methods Mol Biol
, vol.592
, pp. 183-202
-
-
Jay, F.1
Renou, J.P.2
Voinnet, O.3
Navarro, L.4
-
30
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress induced miRNA
-
Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress induced miRNA. Mol Cell 14: 787-799.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
32
-
-
84864719870
-
Identification of a miRNA candidate reflects the possible significance of transcribed microsatellites in the hairpin precursors of black pepper
-
Joy N, Soniya EV (2012) Identification of a miRNA candidate reflects the possible significance of transcribed microsatellites in the hairpin precursors of black pepper. Funct Integr Genomics 12: 387-395.
-
(2012)
Funct Integr Genomics
, vol.12
, pp. 387-395
-
-
Joy, N.1
Soniya, E.V.2
-
33
-
-
1542317414
-
microRNA-mediated repression of rolled leaf specifies maize leaf polarity
-
Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC (2004) microRNA-mediated repression of rolled leaf specifies maize leaf polarity. Nature 428: 84-88.
-
(2004)
Nature
, vol.428
, pp. 84-88
-
-
Juarez, M.T.1
Kui, J.S.2
Thomas, J.3
Heller, B.A.4
Timmermans, M.C.5
-
34
-
-
34247329478
-
MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis
-
Jung JH, Park CM (2007) MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis. Planta 225: 1327-1338.
-
(2007)
Planta
, vol.225
, pp. 1327-1338
-
-
Jung, J.H.1
Park, C.M.2
-
35
-
-
78650520209
-
Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
-
Kantar M, Unver T, Budak H (2010) Regulation of barley miRNAs upon dehydration stress correlated with target gene expression. Funct Integr Genomics 10: 493-507.
-
(2010)
Funct Integr Genomics
, vol.10
, pp. 493-507
-
-
Kantar, M.1
Unver, T.2
Budak, H.3
-
36
-
-
1542377275
-
Spatially restricted microRNA directs leaf polarity through ARGONAUTE1
-
Kidner CA, Martienssen RA (2004) Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 428: 81-84.
-
(2004)
Nature
, vol.428
, pp. 81-84
-
-
Kidner, C.A.1
Martienssen, R.A.2
-
37
-
-
20144387641
-
MicroRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems
-
Kim J, Jung JH, Reyes JL, Kim YS, Kim SY, Chung KS, Kim JA, Lee M, Lee Y, Kim VN, Chua NH, Park CM (2005) MicroRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J 42: 84-94.
-
(2005)
Plant J
, vol.42
, pp. 84-94
-
-
Kim, J.1
Jung, J.H.2
Reyes, J.L.3
Kim, Y.S.4
Kim, S.Y.5
Chung, K.S.6
Kim, J.A.7
Lee, M.8
Lee, Y.9
Kim, V.N.10
Chua, N.H.11
Park, C.M.12
-
38
-
-
33747849920
-
RNAhybrid: microRNA target prediction easy, fast and flexible
-
Krüger J, Rehmsmeier M (2006) RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 34: W451-W454.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Krüger, J.1
Rehmsmeier, M.2
-
39
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Radmark O, Kim S, Kim V (2003) The nuclear RNase III Drosha initiates microRNA processing. Nature 425: 415-419.
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Radmark, O.9
Kim, S.10
Kim, V.11
-
40
-
-
46249113503
-
Large-scale analysis of the GRAS gene family in Arabidopsis thaliana
-
Lee MH, Kim B, Song SK, Heo JO, Yu NI, Lee SA, Kim M, Kim DG, Sohn SO, Lim CE, Chang KS, Lee MM, Lim J (2008) Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol Biol 67: 659-670.
-
(2008)
Plant Mol Biol
, vol.67
, pp. 659-670
-
-
Lee, M.H.1
Kim, B.2
Song, S.K.3
Heo, J.O.4
Yu, N.I.5
Lee, S.A.6
Kim, M.7
Kim, D.G.8
Sohn, S.O.9
Lim, C.E.10
Chang, K.S.11
Lee, M.M.12
Lim, J.13
-
41
-
-
33947309774
-
Evolution of plant microRNA gene families
-
Li A, Mao L (2007) Evolution of plant microRNA gene families. Cell Res 17: 212-218.
-
(2007)
Cell Res
, vol.17
, pp. 212-218
-
-
Li, A.1
Mao, L.2
-
42
-
-
27744496367
-
The putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and microRNA165/166 in Arabidopsis leaf development
-
Li H, Xu L, Wang H, Yuan Z, Cao X, Yang Z, Zhang D, Xu Y, Huang H (2005) The putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and microRNA165/166 in Arabidopsis leaf development. Plant Cell 17: 2157-2171.
-
(2005)
Plant Cell
, vol.17
, pp. 2157-2171
-
-
Li, H.1
Xu, L.2
Wang, H.3
Yuan, Z.4
Cao, X.5
Yang, Z.6
Zhang, D.7
Xu, Y.8
Huang, H.9
-
45
-
-
33745271035
-
Functions of microRNAs and related small RNAs in plants
-
Mallory AC, Vaucheret H (2006) Functions of microRNAs and related small RNAs in plants. Nat Genet 38: 850.
-
(2006)
Nat Genet
, vol.38
, pp. 850
-
-
Mallory, A.C.1
Vaucheret, H.2
-
46
-
-
84874545452
-
Dynamic regulation of novel and conserved miRNAs across various tissues of diverse Cucurbit species
-
doi: 10. 1007/s11105-012-0506-7
-
Manohar S, Jagadeeswaran G, Nimmakayala P, Tomason Y, Almeida A, Sunkar R, Levi A, Reddy UK (2012) Dynamic regulation of novel and conserved miRNAs across various tissues of diverse Cucurbit species. Plant Mol Biol Rep. doi: 10. 1007/s11105-012-0506-7.
-
(2012)
Plant Mol Biol Rep
-
-
Manohar, S.1
Jagadeeswaran, G.2
Nimmakayala, P.3
Tomason, Y.4
Almeida, A.5
Sunkar, R.6
Levi, A.7
Reddy, U.K.8
-
47
-
-
0035822096
-
Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots
-
McConnell JR, Emery J, Eshed Y, Bao N, Bowman J, Barton MK (2001) Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709-713.
-
(2001)
Nature
, vol.411
, pp. 709-713
-
-
McConnell, J.R.1
Emery, J.2
Eshed, Y.3
Bao, N.4
Bowman, J.5
Barton, M.K.6
-
48
-
-
60149090481
-
Criteria for annotation of plant microRNAs
-
Meyers BC, Axtell MJ, Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, Zhu JK (2008) Criteria for annotation of plant microRNAs. Plant Cell 20: 3186-3790.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3790
-
-
Meyers, B.C.1
Axtell, M.J.2
Bartel, B.3
Bartel, D.P.4
Baulcombe, D.5
Bowman, J.L.6
Cao, X.7
Carrington, J.C.8
Chen, X.9
Green, P.J.10
Griffiths-Jones, S.11
Jacobsen, S.E.12
Mallory, A.C.13
Martienssen, R.A.14
Poethig, R.S.15
Qi, Y.16
Vaucheret, H.17
Voinnet, O.18
Watanabe, Y.19
Weigel, D.20
Zhu, J.K.21
more..
-
49
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 50 terminal nucleotide
-
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C et al (2008) Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 50 terminal nucleotide. Cell 133: 116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
Wu, L.7
Li, S.8
Zhou, H.9
Long, C.10
-
50
-
-
34347355440
-
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
-
Molnár A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC (2007) miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 447: 1126-1129.
-
(2007)
Nature
, vol.447
, pp. 1126-1129
-
-
Molnár, A.1
Schwach, F.2
Studholme, D.J.3
Thuenemann, E.C.4
Baulcombe, D.C.5
-
51
-
-
84863200223
-
Origins and evolution of microRNA genes in plant species
-
Nozawa M, Miura S, Nei M (2012) Origins and evolution of microRNA genes in plant species. Genome Biol Evol 4(3): 230-23.
-
(2012)
Genome Biol Evol
, vol.4
, Issue.3
, pp. 223-230
-
-
Nozawa, M.1
Miura, S.2
Nei, M.3
-
52
-
-
76249125348
-
Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)
-
Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ (2009) Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). Genome Biol 10: R122.
-
(2009)
Genome Biol
, vol.10
-
-
Pang, M.1
Woodward, A.W.2
Agarwal, V.3
Guan, X.4
Ha, M.5
Ramachandran, V.6
Chen, X.7
Triplett, B.A.8
Stelly, D.M.9
Chen, Z.J.10
-
53
-
-
4444234497
-
In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA
-
Parizotto EA, Dunoye P, Rahm N, Himber C, Vionnet O (2004) In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. Genes Dev 18: 2237-2242.
-
(2004)
Genes Dev
, vol.18
, pp. 2237-2242
-
-
Parizotto, E.A.1
Dunoye, P.2
Rahm, N.3
Himber, C.4
Vionnet, O.5
-
54
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12: 1484-1495.
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
55
-
-
42449099982
-
Dual coding of siRNAs and miRNAs by plant transposable elements
-
Piriyapongsa J, Jordan IK (2008) Dual coding of siRNAs and miRNAs by plant transposable elements. RNA 14: 814-821.
-
(2008)
Rna
, vol.14
, pp. 814-821
-
-
Piriyapongsa, J.1
Jordan, I.K.2
-
56
-
-
0033118897
-
The GRAS gene family in Arabidopsis: Sequence characterization and basic expression analysis of the SCARECROW-LIKE genes
-
Pysh LD, Wysocka-Diller JW, Camilleri C, Bouchez D, Benfey PN (1999) The GRAS gene family in Arabidopsis: Sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. Plant J 18: 111-119.
-
(1999)
Plant J
, vol.18
, pp. 111-119
-
-
Pysh, L.D.1
Wysocka-Diller, J.W.2
Camilleri, C.3
Bouchez, D.4
Benfey, P.N.5
-
58
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002) MicroRNAs in plants. Genes Dev 16: 1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
59
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP (2002) Prediction of plant microRNA targets. Cell 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
Burge, C.B.4
Bartel, B.5
Bartel, D.P.6
-
60
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517-527.
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
Weigel, D.6
-
61
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu JK (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16: 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
62
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
63
-
-
38849140922
-
Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
-
Varkonyi-Gasic E, Wu R, Wood M, Walton EF, Hellens RP (2007) Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Method 3: 12.
-
(2007)
Plant Method
, vol.3
, pp. 12
-
-
Varkonyi-Gasic, E.1
Wu, R.2
Wood, M.3
Walton, E.F.4
Hellens, R.P.5
-
64
-
-
12744262431
-
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
-
Wang XJ, Reyes JL, Chua NH, Gaasterland T (2004) Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol 5: 1-15.
-
(2004)
Genome Biol
, vol.5
, pp. 1-15
-
-
Wang, X.J.1
Reyes, J.L.2
Chua, N.H.3
Gaasterland, T.4
-
65
-
-
77957298469
-
MicroRNA171c-targeted SCL6-II, SCL6-III, and SCL6-IV genes regulate shoot branching in Arabidopsis
-
Wang L, Mai YX, Zhang YC, Luo Q, Yang HQ (2010) MicroRNA171c-targeted SCL6-II, SCL6-III, and SCL6-IV genes regulate shoot branching in Arabidopsis. Mol Plant 3: 794-806.
-
(2010)
Mol Plant
, vol.3
, pp. 794-806
-
-
Wang, L.1
Mai, Y.X.2
Zhang, Y.C.3
Luo, Q.4
Yang, H.Q.5
-
66
-
-
24944443408
-
Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes
-
Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC (2005) Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 132: 3657-3668.
-
(2005)
Development
, vol.132
, pp. 3657-3668
-
-
Williams, L.1
Grigg, S.P.2
Xie, M.3
Christensen, S.4
Fletcher, J.C.5
-
67
-
-
79957501940
-
MicroRNAs in the shoot apical meristem of soybean
-
Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL (2011) MicroRNAs in the shoot apical meristem of soybean. J Exp Bot 62: 2495-2506.
-
(2011)
J Exp Bot
, vol.62
, pp. 2495-2506
-
-
Wong, C.E.1
Zhao, Y.T.2
Wang, X.J.3
Croft, L.4
Wang, Z.H.5
Haerizadeh, F.6
Mattick, J.S.7
Singh, M.B.8
Carroll, B.J.9
Bhalla, P.L.10
-
68
-
-
80255127452
-
Identification of novel and conserved microRNAs in Rehmannia glutinosa L. by Solexa sequencing
-
Yang Y, Chen X, Chen J, Xu H, Li J, Zhang Z (2011) Identification of novel and conserved microRNAs in Rehmannia glutinosa L. by Solexa sequencing. Plant Mol Biol Rep 29: 986-996.
-
(2011)
Plant Mol Biol Rep
, vol.29
, pp. 986-996
-
-
Yang, Y.1
Chen, X.2
Chen, J.3
Xu, H.4
Li, J.5
Zhang, Z.6
-
69
-
-
39549115890
-
Cloning and characterisation of microRNAs from wheat (Triticum aestivum L.)
-
Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q (2007) Cloning and characterisation of microRNAs from wheat (Triticum aestivum L.). Genome Biol 8: R96.
-
(2007)
Genome Biol
, vol.8
-
-
Yao, Y.1
Guo, G.2
Ni, Z.3
Sunkar, R.4
Du, J.5
Zhu, J.K.6
Sun, Q.7
-
70
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA (2005) Identification and characterization of new plant microRNAs using EST analysis. Cell Res 15: 336-360.
-
(2005)
Cell Res
, vol.15
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
Cobb, G.P.4
Anderson, T.A.5
-
71
-
-
33646830110
-
a) Conservation and divergence of plant microRNA genes
-
Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA (2006a) a) Conservation and divergence of plant microRNA genes. Plant J 46: 243-259.
-
(2006)
Plant J
, vol.46
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
-
72
-
-
33745156778
-
Identification of 188 conserved maize microRNAs and their targets
-
Zhang BH, Pan XP, Anderson TA (2006b) Identification of 188 conserved maize microRNAs and their targets. FEBS Lett 580: 3753-3762.
-
(2006)
FEBS Lett
, vol.580
, pp. 3753-3762
-
-
Zhang, B.H.1
Pan, X.P.2
Anderson, T.A.3
-
73
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
Zhang BH, Pan XP, Cox SB, Cobb GP, Anderson TA (2006c) Evidence that miRNAs are different from other RNAs. Cell Mol Life Sci 63: 246-254.
-
(2006)
Cell Mol Life Sci
, vol.63
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, S.B.3
Cobb, G.P.4
Anderson, T.A.5
-
74
-
-
83355173057
-
Evolution of microRNA genes in Oryza sativa and Arabidopsis thaliana: an update of the inverted duplication model
-
Zhang Y, Jiang W, Gao L (2011) Evolution of microRNA genes in Oryza sativa and Arabidopsis thaliana: an update of the inverted duplication model. PLoS One 6: e28073.
-
(2011)
PLoS One
, vol.6
-
-
Zhang, Y.1
Jiang, W.2
Gao, L.3
-
75
-
-
34249093687
-
A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
-
Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y (2007) A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev 21: 1190-1203.
-
(2007)
Genes Dev
, vol.21
, pp. 1190-1203
-
-
Zhao, T.1
Li, G.2
Mi, S.3
Li, S.4
Hannon, G.J.5
Wang, X.J.6
Qi, Y.7
-
76
-
-
34249710294
-
Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis
-
Zhou GK, Kubo M, Zhong R, Demura T, Ye ZH (2007) Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis. Plant Cell Physiol 48: 391-404.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 391-404
-
-
Zhou, G.K.1
Kubo, M.2
Zhong, R.3
Demura, T.4
Ye, Z.H.5
-
77
-
-
79953857473
-
Arabidopsis argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development
-
Zhu H, Hu F, Wang R, Zhou X, Sze SH, Liou LW, Barefoot A, Dickman M, Zhang X (2011) Arabidopsis argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell 145: 242-256.
-
(2011)
Cell
, vol.145
, pp. 242-256
-
-
Zhu, H.1
Hu, F.2
Wang, R.3
Zhou, X.4
Sze, S.H.5
Liou, L.W.6
Barefoot, A.7
Dickman, M.8
Zhang, X.9
-
78
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide
-
In: Barciszewski J, Clark BFC (ed), NATO ASI series, Kluwer, Dordrecht
-
Zuker M, Mathews DH, Turner DH (1999) Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In: Barciszewski J, Clark BFC (ed) RNA biochemistry and biotechnology, NATO ASI series, Kluwer, Dordrecht.
-
(1999)
RNA biochemistry and biotechnology
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
|