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Volumn 8, Issue 5, 2013, Pages

Fitness Costs of Synonymous Mutations in the rpsT Gene Can Be Compensated by Restoring mRNA Base Pairing

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; MESSENGER RNA; PROTEIN S20; RIBOSOME PROTEIN; UNCLASSIFIED DRUG;

EID: 84877744494     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0063373     Document Type: Article
Times cited : (18)

References (29)
  • 1
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • Eyre-Walker A, Keightley PD, (2007) The distribution of fitness effects of new mutations. Nature reviews Genetics 8: 610-618.
    • (2007) Nature Reviews Genetics , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 3
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: an expanding universe
    • Ghildiyal M, Zamore PD, (2009) Small silencing RNAs: an expanding universe. Nature Reviews Genetics 10: 94-108.
    • (2009) Nature Reviews Genetics , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 4
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters LS, Storz G, (2009) Regulatory RNAs in bacteria. Cell 136: 615-628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 5
    • 68049107038 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution
    • Jablonka E, Raz G, (2009) Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. The Quarterly review of biology 84: 131-176.
    • (2009) The Quarterly Review of Biology , vol.84 , pp. 131-176
    • Jablonka, E.1    Raz, G.2
  • 6
    • 76549135113 scopus 로고    scopus 로고
    • Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease
    • Feinberg AP, Irizarry RA, (2010) Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease. Proceedings of the National Academy of Sciences 107: 1757.
    • (2010) Proceedings of the National Academy of Sciences , vol.107 , pp. 1757
    • Feinberg, A.P.1    Irizarry, R.A.2
  • 7
    • 0025297285 scopus 로고
    • Codon preferences in free-living microorganisms
    • Andersson SG, Kurland CG, (1990) Codon preferences in free-living microorganisms. Microbiol Rev 54: 198-210.
    • (1990) Microbiol Rev , vol.54 , pp. 198-210
    • Andersson, S.G.1    Kurland, C.G.2
  • 8
    • 31144465926 scopus 로고    scopus 로고
    • Hearing silence: non-neutral evolution at synonymous sites in mammals
    • Chamary JV, Parmley JL, Hurst LD, (2006) Hearing silence: non-neutral evolution at synonymous sites in mammals. Nat Rev Genet 7: 98-108.
    • (2006) Nat Rev Genet , vol.7 , pp. 98-108
    • Chamary, J.V.1    Parmley, J.L.2    Hurst, L.D.3
  • 9
    • 0027432923 scopus 로고
    • Reduced synonymous substitution rate at the start of enterobacterial genes
    • Eyre-Walker A, Bulmer M, (1993) Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res 21: 4599-4603.
    • (1993) Nucleic Acids Res , vol.21 , pp. 4599-4603
    • Eyre-Walker, A.1    Bulmer, M.2
  • 10
    • 78650304100 scopus 로고    scopus 로고
    • Synonymous but not the same: the causes and consequences of codon bias
    • Plotkin JB, Kudla G, (2011) Synonymous but not the same: the causes and consequences of codon bias. Nat Rev Genet 12: 32-42.
    • (2011) Nat Rev Genet , vol.12 , pp. 32-42
    • Plotkin, J.B.1    Kudla, G.2
  • 12
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
    • Drummond DA, Wilke CO, (2008) Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell 134: 341-352.
    • (2008) Cell , vol.134 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 13
    • 33846786904 scopus 로고    scopus 로고
    • Synonymous codon usage in Escherichia coli: selection for translational accuracy
    • Stoletzki N, Eyre-Walker A, (2007) Synonymous codon usage in Escherichia coli: selection for translational accuracy. Mol Biol Evol 24: 374-381.
    • (2007) Mol Biol Evol , vol.24 , pp. 374-381
    • Stoletzki, N.1    Eyre-Walker, A.2
  • 14
    • 8744310123 scopus 로고    scopus 로고
    • Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization
    • Rocha EP, (2004) Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res 14: 2279-2286.
    • (2004) Genome Res , vol.14 , pp. 2279-2286
    • Rocha, E.P.1
  • 15
    • 0038179369 scopus 로고    scopus 로고
    • Selective charging of tRNA isoacceptors explains patterns of codon usage
    • Elf J, Nilsson D, Tenson T, Ehrenberg M, (2003) Selective charging of tRNA isoacceptors explains patterns of codon usage. Science 300: 1718.
    • (2003) Science , vol.300 , pp. 1718
    • Elf, J.1    Nilsson, D.2    Tenson, T.3    Ehrenberg, M.4
  • 16
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T, (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2: 13-34.
    • (1985) Mol Biol Evol , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 17
    • 70349199628 scopus 로고    scopus 로고
    • Design parameters to control synthetic gene expression in Escherichia coli
    • Welch M, Govindarajan S, Ness JE, Villalobos A, Gurney A, et al. (2009) Design parameters to control synthetic gene expression in Escherichia coli. PLoS One 4: e7002.
    • (2009) PLoS One , vol.4
    • Welch, M.1    Govindarajan, S.2    Ness, J.E.3    Villalobos, A.4    Gurney, A.5
  • 18
    • 0030806245 scopus 로고    scopus 로고
    • Codon bias in Escherichia coli: the influence of codon context on mutation and selection
    • Berg OG, Silva PJ, (1997) Codon bias in Escherichia coli: the influence of codon context on mutation and selection. Nucleic Acids Res 25: 1397-1404.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1397-1404
    • Berg, O.G.1    Silva, P.J.2
  • 20
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla G, Murray AW, Tollervey D, Plotkin JB, (2009) Coding-sequence determinants of gene expression in Escherichia coli. Science 324: 255-258.
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 21
    • 78149293610 scopus 로고    scopus 로고
    • Mutational Robustness of Ribosomal Protein Genes
    • Lind PA, Berg OG, Andersson DI, (2010) Mutational Robustness of Ribosomal Protein Genes. Science 330: 825.
    • (2010) Science , vol.330 , pp. 825
    • Lind, P.A.1    Berg, O.G.2    Andersson, D.I.3
  • 22
    • 33646838978 scopus 로고    scopus 로고
    • A periodic pattern of mRNA secondary structure created by the genetic code
    • Shabalina SA, Ogurtsov AY, Spiridonov NA, (2006) A periodic pattern of mRNA secondary structure created by the genetic code. Nucleic Acids Res 34: 2428-2437.
    • (2006) Nucleic Acids Res , vol.34 , pp. 2428-2437
    • Shabalina, S.A.1    Ogurtsov, A.Y.2    Spiridonov, N.A.3
  • 23
    • 30744432134 scopus 로고    scopus 로고
    • Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
    • Chamary JV, Hurst LD, (2005) Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals. Genome Biol 6: R75.
    • (2005) Genome Biol , vol.6
    • Chamary, J.V.1    Hurst, L.D.2
  • 24
    • 33846504706 scopus 로고    scopus 로고
    • A "silent" polymorphism in the MDR1 gene changes substrate specificity
    • Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, Calcagno AM, et al. (2007) A "silent" polymorphism in the MDR1 gene changes substrate specificity. Science 315: 525-528.
    • (2007) Science , vol.315 , pp. 525-528
    • Kimchi-Sarfaty, C.1    Oh, J.M.2    Kim, I.W.3    Sauna, Z.E.4    Calcagno, A.M.5
  • 25
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic acids research 31: 3406-3415.
    • (2003) Nucleic Acids Research , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 26
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640-6645.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 27
    • 77349104670 scopus 로고    scopus 로고
    • Compensatory gene amplification restores fitness after inter-species gene replacements
    • Lind PA, Tobin C, Berg OG, Kurland CG, Andersson DI, (2010) Compensatory gene amplification restores fitness after inter-species gene replacements. Mol Microbiol 75: 1078-1089.
    • (2010) Mol Microbiol , vol.75 , pp. 1078-1089
    • Lind, P.A.1    Tobin, C.2    Berg, O.G.3    Kurland, C.G.4    Andersson, D.I.5
  • 28
    • 0025527885 scopus 로고
    • Experimental studies of natural selection in bacteria
    • Dykhuizen DE, (1990) Experimental studies of natural selection in bacteria. Annu Rev Ecol Syst 21: 373-398.
    • (1990) Annu Rev Ecol Syst , vol.21 , pp. 373-398
    • Dykhuizen, D.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.