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Volumn 75, Issue 5, 2010, Pages 1078-1089

Compensatory gene amplification restores fitness after inter-species gene replacements

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME PROTEIN; BACTERIAL PROTEIN; RIBOSOMAL PROTEIN L1; RIBOSOMAL PROTEIN L17; RIBOSOMAL PROTEIN S20;

EID: 77349104670     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2009.07030.x     Document Type: Article
Times cited : (78)

References (37)
  • 1
    • 0019570557 scopus 로고
    • Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA (rrn) cistrons
    • Anderson, P. Roth, J. (1981) Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA (rrn) cistrons. Proc Natl Acad Sci USA 78 : 3113 3117.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 3113-3117
    • Anderson, P.1    Roth, J.2
  • 2
    • 33748693294 scopus 로고    scopus 로고
    • The biological cost of mutational antibiotic resistance: Any practical conclusions?
    • Andersson, D.I. (2006) The biological cost of mutational antibiotic resistance: any practical conclusions? Curr Opin Microbiol 9 : 461 465.
    • (2006) Curr Opin Microbiol , vol.9 , pp. 461-465
    • Andersson, D.I.1
  • 3
    • 0033515041 scopus 로고    scopus 로고
    • An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
    • Asai, T., Zaporojets, D., Squires, C. Squires, C.L. (1999) An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc Natl Acad Sci USA 96 : 1971 1976.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 1971-1976
    • Asai, T.1    Zaporojets, D.2    Squires, C.3    Squires, C.L.4
  • 4
    • 0029867157 scopus 로고    scopus 로고
    • Selection intensity for codon bias and the effective population size of Escherichia coli
    • Berg, O.G. (1996) Selection intensity for codon bias and the effective population size of Escherichia coli. Genet 142 : 1379 1382.
    • (1996) Genet , vol.142 , pp. 1379-1382
    • Berg, O.G.1
  • 5
    • 0036899896 scopus 로고    scopus 로고
    • Evolution of microbial genomes: Sequence acquisition and loss
    • Berg, O.G. Kurland, C.G. (2002) Evolution of microbial genomes: sequence acquisition and loss. Mol Biol Evol 19 : 2265 2276.
    • (2002) Mol Biol Evol , vol.19 , pp. 2265-2276
    • Berg, O.G.1    Kurland, C.G.2
  • 6
    • 36749083463 scopus 로고    scopus 로고
    • Ohno's dilemma: Evolution of new genes under continuous selection
    • Bergthorsson, U., Andersson, D.I. Roth, J.R. (2007) Ohno's dilemma: evolution of new genes under continuous selection. Proc Natl Acad Sci USA 104 : 17004 17009.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 17004-17009
    • Bergthorsson, U.1    Andersson, D.I.2    Roth, J.R.3
  • 7
    • 0023694037 scopus 로고
    • Evolution of a bacteria/plasmid association
    • Bouma, J.E. Lenski, R.E. (1988) Evolution of a bacteria/plasmid association. Nature 335 : 351 352.
    • (1988) Nature , vol.335 , pp. 351-352
    • Bouma, J.E.1    Lenski, R.E.2
  • 8
    • 0034565944 scopus 로고    scopus 로고
    • The evolutionary history of ribosomal protein RpS14: Horizontal gene transfer at the heart of the ribosome
    • Brochier, C., Philippe, H. Moreira, D. (2000) The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome. Trends Genet 16 : 529 533.
    • (2000) Trends Genet , vol.16 , pp. 529-533
    • Brochier, C.1    Philippe, H.2    Moreira, D.3
  • 9
    • 0347992016 scopus 로고    scopus 로고
    • Amelioration of the cost of conjugative plasmid carriage in Escherichia coli K12
    • Dahlberg, C. Chao, L. (2003) Amelioration of the cost of conjugative plasmid carriage in Escherichia coli K12. Genet 165 : 1641 1649.
    • (2003) Genet , vol.165 , pp. 1641-1649
    • Dahlberg, C.1    Chao, L.2
  • 10
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K.A. Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97 : 6640 6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 11
    • 0025527885 scopus 로고
    • Experimental studies of natural selection in bacteria
    • Dykhuizen, D.E. (1990) Experimental studies of natural selection in bacteria. Annu Rev Ecol Syst 21 : 373 398.
    • (1990) Annu Rev Ecol Syst , vol.21 , pp. 373-398
    • Dykhuizen, D.E.1
  • 12
    • 0021370660 scopus 로고
    • Costs of accuracy determined by a maximal growth rate constraint
    • Ehrenberg, M. Kurland, C.G. (1984) Costs of accuracy determined by a maximal growth rate constraint. Q Rev Biophys 17 : 45 82.
    • (1984) Q Rev Biophys , vol.17 , pp. 45-82
    • Ehrenberg, M.1    Kurland, C.G.2
  • 13
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz, M.B., Levine, A.J., Siggia, E.D. Swain, P.S. (2002) Stochastic gene expression in a single cell. Science 297 : 1183 1186.
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 14
    • 0029018327 scopus 로고
    • Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
    • Guzman, L.M., Belin, D., Carson, M.J. Beckwith, J. (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol 177 : 4121 4130.
    • (1995) J Bacteriol , vol.177 , pp. 4121-4130
    • Guzman, L.M.1    Belin, D.2    Carson, M.J.3    Beckwith, J.4
  • 15
    • 0642344263 scopus 로고    scopus 로고
    • Duplication is more common among laterally transferred genes than among indigenous genes
    • Hooper, S.D. Berg, O.G. (2003a) Duplication is more common among laterally transferred genes than among indigenous genes. Genome Biol 4 : R48.
    • (2003) Genome Biol , vol.4 , pp. 48
    • Hooper, S.D.1    Berg, O.G.2
  • 16
    • 0037572262 scopus 로고    scopus 로고
    • On the nature of gene innovation: Duplication patterns in microbial genomes
    • Hooper, S.D. Berg, O.G. (2003b) On the nature of gene innovation: duplication patterns in microbial genomes. Mol Biol Evol 20 : 945 954.
    • (2003) Mol Biol Evol , vol.20 , pp. 945-954
    • Hooper, S.D.1    Berg, O.G.2
  • 17
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain, R., Rivera, M.C. Lake, J.A. (1999) Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci USA 96 : 3801 3806.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 18
    • 0000800333 scopus 로고
    • On the probability of fixation of mutant genes in a population
    • Kimura, M. (1962) On the probability of fixation of mutant genes in a population. Genet 47 : 713 719.
    • (1962) Genet , vol.47 , pp. 713-719
    • Kimura, M.1
  • 19
    • 64849114915 scopus 로고    scopus 로고
    • Coding-sequence determinants of gene expression in Escherichia coli
    • Kudla, G., Murray, A.W., Tollervey, D. Plotkin, J.B. (2009) Coding-sequence determinants of gene expression in Escherichia coli. Science 324 : 255 258.
    • (2009) Science , vol.324 , pp. 255-258
    • Kudla, G.1    Murray, A.W.2    Tollervey, D.3    Plotkin, J.B.4
  • 20
    • 57549115252 scopus 로고    scopus 로고
    • The fate of new bacterial genes
    • Kuo, C.H. Ochman, H. (2009) The fate of new bacterial genes. FEMS Microbiol Rev 33 : 38 43.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 38-43
    • Kuo, C.H.1    Ochman, H.2
  • 22
    • 36248938264 scopus 로고    scopus 로고
    • The origins of modern proteomes
    • Kurland, C.G., Canback, B. Berg, O.G. (2007) The origins of modern proteomes. Biochimie 89 : 1454 1463.
    • (2007) Biochimie , vol.89 , pp. 1454-1463
    • Kurland, C.G.1    Canback, B.2    Berg, O.G.3
  • 23
    • 0032482924 scopus 로고    scopus 로고
    • Molecular archaeology of the Escherichia coli genome
    • Lawrence, J.G. Ochman, H. (1998) Molecular archaeology of the Escherichia coli genome. Proc Natl Acad Sci USA 95 : 9413 9417.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 9413-9417
    • Lawrence, J.G.1    Ochman, H.2
  • 24
    • 0035225012 scopus 로고    scopus 로고
    • Two C or not two C: Recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins
    • RESEARCH 0033
    • Makarova, K.S., Ponomarev, V.A. Koonin, E.V. (2001) Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins. Genome Biol 2 : 1 14. RESEARCH 0033
    • (2001) Genome Biol , vol.2 , pp. 1-14
    • Makarova, K.S.1    Ponomarev, V.A.2    Koonin, E.V.3
  • 25
    • 0019297501 scopus 로고
    • Genetic variability and effective population size when local extinction and recolonization of subpopulations are frequent
    • Maruyama, T. Kimura, M. (1980) Genetic variability and effective population size when local extinction and recolonization of subpopulations are frequent. Proc Natl Acad Sci USA 77 : 6710 6714.
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 6710-6714
    • Maruyama, T.1    Kimura, M.2
  • 26
    • 0026522792 scopus 로고
    • Selection of laboratory wild-type phenotype from natural isolates of Escherichia coli in chemostats
    • Mikkola, R. Kurland, C.G. (1992) Selection of laboratory wild-type phenotype from natural isolates of Escherichia coli in chemostats. Mol Biol Evol 9 : 394 402.
    • (1992) Mol Biol Evol , vol.9 , pp. 394-402
    • Mikkola, R.1    Kurland, C.G.2
  • 27
    • 33746008173 scopus 로고    scopus 로고
    • Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella
    • Navarre, W.W., Porwollik, S., Wang, Y., McClelland, M., Rosen, H., Libby, S.J. Fang, F.C. (2006) Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 313 : 236 238.
    • (2006) Science , vol.313 , pp. 236-238
    • Navarre, W.W.1    Porwollik, S.2    Wang, Y.3    McClelland, M.4    Rosen, H.5    Libby, S.J.6    Fang, F.C.7
  • 28
    • 0034671796 scopus 로고    scopus 로고
    • Evolutionary dynamics of full genome content in Escherichia coli
    • Ochman, H. Jones, I.B. (2000) Evolutionary dynamics of full genome content in Escherichia coli. EMBO J 19 : 6637 6643.
    • (2000) EMBO J , vol.19 , pp. 6637-6643
    • Ochman, H.1    Jones, I.B.2
  • 29
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G. Groisman, E.A. (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405 : 299 304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 31
    • 0012088802 scopus 로고
    • Population size and rate of evolution
    • Ohta, T. (1972) Population size and rate of evolution. J Mol Evol 1 : 305 314.
    • (1972) J Mol Evol , vol.1 , pp. 305-314
    • Ohta, T.1
  • 32
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp, B., Pal, C. Hurst, L.D. (2003) Dosage sensitivity and the evolution of gene families in yeast. Nature 424 : 194 197.
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 33
    • 65449142090 scopus 로고    scopus 로고
    • Evolution of new gene functions: Simulation and analysis of the amplification model
    • Pettersson, M.E., Sun, S., Andersson, D.I. Berg, O.G. (2009) Evolution of new gene functions: simulation and analysis of the amplification model. Genetica 135 : 309 324.
    • (2009) Genetica , vol.135 , pp. 309-324
    • Pettersson, M.E.1    Sun, S.2    Andersson, D.I.3    Berg, O.G.4
  • 34
    • 0023650543 scopus 로고
    • The codon Adaptation Index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P.M. Li, W.H. (1987) The codon Adaptation Index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15 : 1281 1295.
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 35
    • 36249021315 scopus 로고    scopus 로고
    • Genome-wide experimental determination of barriers to horizontal gene transfer
    • Sorek, R., Zhu, Y., Creevey, C.J., Francino, M.P., Bork, P. Rubin, E.M. (2007) Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318 : 1449 1452.
    • (2007) Science , vol.318 , pp. 1449-1452
    • Sorek, R.1    Zhu, Y.2    Creevey, C.J.3    Francino, M.P.4    Bork, P.5    Rubin, E.M.6
  • 36
    • 23944475626 scopus 로고    scopus 로고
    • Mechanisms of, and barriers to, horizontal gene transfer between bacteria
    • Thomas, C.M. Nielsen, K.M. (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3 : 711 721.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 711-721
    • Thomas, C.M.1    Nielsen, K.M.2
  • 37
    • 39749170667 scopus 로고    scopus 로고
    • Complexity, connectivity, and duplicability as barriers to lateral gene transfer
    • Wellner, A., Lurie, M.N. Gophna, U. (2007) Complexity, connectivity, and duplicability as barriers to lateral gene transfer. Genome Biol 8 : R156.
    • (2007) Genome Biol , vol.8 , pp. 156
    • Wellner, A.1    Lurie, M.N.2    Gophna, U.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.