-
1
-
-
1542344435
-
Proteasomes and their kin. Proteases in the machine age
-
Pickart, C. M., and Cohen, R. E. (2004) Proteasomes and their kin. Proteases in the machine age. Nat. Rev. 5, 177-187
-
(2004)
Nat. Rev
, vol.5
, pp. 177-187
-
-
Pickart, C.M.1
Cohen, R.E.2
-
2
-
-
84861553163
-
Functional asymmetries of proteasome translocase pore
-
Erales, J., Hoyt, M. A., Troll, F., and Coffino, P. (2012) Functional asymmetries of proteasome translocase pore. J. Biol. Chem. 287, 18535-18543
-
(2012)
J. Biol. Chem
, vol.287
, pp. 18535-18543
-
-
Erales, J.1
Hoyt, M.A.2
Troll, F.3
Coffino, P.4
-
3
-
-
21244480104
-
Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation
-
Hinnerwisch, J., Fenton, W. A., Furtak, K. J., Farr, G. W., and Horwich, A. L. (2005) Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation. Cell 121, 1029-1041
-
(2005)
Cell
, vol.121
, pp. 1029-1041
-
-
Hinnerwisch, J.1
Fenton, W.A.2
Furtak, K.J.3
Farr, G.W.4
Horwich, A.L.5
-
5
-
-
79953888421
-
Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine
-
Aubin-Tam, M.-E., Olivares, A. O., Sauer, R. T., Baker, T. A., and Lang, M. J. (2011) Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine. Cell 145, 257-267
-
(2011)
Cell
, vol.145
, pp. 257-267
-
-
Aubin-Tam, M.-E.1
Olivares, A.O.2
Sauer, R.T.3
Baker, T.A.4
Lang, M.J.5
-
6
-
-
79955534260
-
ClpX(P) generates mechanical force to unfold and translocate its protein substrates
-
Maillard, R. A., Chistol, G., Sen, M., Righini, M., Tan, J., Kaiser, C. M., Hodges, C., Martin, A., and Bustamante, C. (2011) ClpX(P) generates mechanical force to unfold and translocate its protein substrates. Cell. 145, 459-469
-
(2011)
Cell
, vol.145
, pp. 459-469
-
-
Maillard, R.A.1
Chistol, G.2
Sen, M.3
Righini, M.4
Tan, J.5
Kaiser, C.M.6
Hodges, C.7
Martin, A.8
Bustamante, C.9
-
8
-
-
79955947361
-
Dependence of proteasome processing rate on substrate unfolding
-
Henderson, A., Erales, J., Hoyt, M. A., and Coffino, P. (2011) Dependence of proteasome processing rate on substrate unfolding. J. Biol. Chem. 286, 17495-17502
-
(2011)
J. Biol. Chem
, vol.286
, pp. 17495-17502
-
-
Henderson, A.1
Erales, J.2
Hoyt, M.A.3
Coffino, P.4
-
9
-
-
3943069115
-
Mechanical processes in biochemistry
-
Bustamante, C., Chemla, Y. R., Forde, N. R., and Izhaky, D. (2004) Mechanical processes in biochemistry. Annu. Rev. Biochem. 73, 705-748
-
(2004)
Annu. Rev. Biochem
, vol.73
, pp. 705-748
-
-
Bustamante, C.1
Chemla, Y.R.2
Forde, N.R.3
Izhaky, D.4
-
10
-
-
13444306170
-
Partitioning between unfolding and release of native domains during ClpXP degradation determines substrate selectivity and partial processing
-
Kenniston, J. A., Baker, T. A., and Sauer, R. T. (2005) Partitioning between unfolding and release of native domains during ClpXP degradation determines substrate selectivity and partial processing. Proc. Natl. Acad. Sci. U.S.A. 102, 1390-1395
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 1390-1395
-
-
Kenniston, J.A.1
Baker, T.A.2
Sauer, R.T.3
-
11
-
-
33846216003
-
Proteasome substrate degradation requires association plus extended peptide
-
Takeuchi, J., Chen, H., and Coffino, P. (2007) Proteasome substrate degradation requires association plus extended peptide. EMBO J. 26, 123-131
-
(2007)
EMBO J
, vol.26
, pp. 123-131
-
-
Takeuchi, J.1
Chen, H.2
Coffino, P.3
-
12
-
-
0026066613
-
Generation of p50 subunit of NF-κB by processing of p105 through an ATP-dependent pathway
-
Fan, C. M., and Maniatis, T. (1991) Generation of p50 subunit of NF-κB by processing of p105 through an ATP-dependent pathway. Nature 354, 395-398
-
(1991)
Nature
, vol.354
, pp. 395-398
-
-
Fan, C.M.1
Maniatis, T.2
-
13
-
-
1542305655
-
Repeat sequence of Epstein-Barr virusencoded nuclear antigen 1 protein interrupts proteasome substrate processing
-
Zhang, M., and Coffino, P. (2004) Repeat sequence of Epstein-Barr virusencoded nuclear antigen 1 protein interrupts proteasome substrate processing. J. Biol. Chem. 279, 8635-8641
-
(2004)
J. Biol. Chem
, vol.279
, pp. 8635-8641
-
-
Zhang, M.1
Coffino, P.2
-
14
-
-
2442645033
-
Proteasomes begin ornithine decarboxylase digestion at the C terminus
-
Zhang, M., MacDonald, A. I., Hoyt, M. A., and Coffino, P. (2004) Proteasomes begin ornithine decarboxylase digestion at the C terminus. J. Biol. Chem. 279, 20959-20965
-
(2004)
J. Biol. Chem
, vol.279
, pp. 20959-20965
-
-
Zhang, M.1
MacDonald, A.I.2
Hoyt, M.A.3
Coffino, P.4
-
15
-
-
33646152750
-
Glycine-alanine repeats impair proper substrate unfolding by the proteasome
-
Hoyt, M. A., Zich, J., Takeuchi, J., Zhang, M., Govaerts, C., and Coffino, P. (2006) Glycine-alanine repeats impair proper substrate unfolding by the proteasome. EMBO J. 25, 1720-1729
-
(2006)
EMBO J
, vol.25
, pp. 1720-1729
-
-
Hoyt, M.A.1
Zich, J.2
Takeuchi, J.3
Zhang, M.4
Govaerts, C.5
Coffino, P.6
-
16
-
-
4344559454
-
An unstructured initiation site is required for efficient proteasomemediated degradation
-
Prakash, S., Tian, L., Ratliff, K. S., Lehotzky, R. E., and Matouschek, A. (2004) An unstructured initiation site is required for efficient proteasomemediated degradation. Nat. Struct. Mol. Biol. 11, 830-837
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 830-837
-
-
Prakash, S.1
Tian, L.2
Ratliff, K.S.3
Lehotzky, R.E.4
Matouschek, A.5
-
17
-
-
0029003999
-
Inhibition of antigen processing by the internal repeat region of the Epstein-Barr virus nuclear antigen-1
-
Levitskaya, J., Coram, M., Levitsky, V., Imreh, S., Steigerwald-Mullen, P. M., Klein, G., Kurilla, M. G., and Masucci, M. G. (1995) Inhibition of antigen processing by the internal repeat region of the Epstein-Barr virus nuclear antigen-1. Nature 375, 685-688
-
(1995)
Nature
, vol.375
, pp. 685-688
-
-
Levitskaya, J.1
Coram, M.2
Levitsky, V.3
Imreh, S.4
Steigerwald-Mullen, P.M.5
Klein, G.6
Kurilla, M.G.7
Masucci, M.G.8
-
18
-
-
27144474906
-
+ motors reveal operating principles for ATP-fuelled machines
-
+ motors reveal operating principles for ATP-fuelled machines. Nature 437, 1115-1120
-
(2005)
Nature
, vol.437
, pp. 1115-1120
-
-
Martin, A.1
Baker, T.A.2
Sauer, R.T.3
-
19
-
-
0031961776
-
Versatile action of Escherichia coli ClpXP as protease or molecular chaperone for bacteriophage Mu transposition
-
Jones, J. M., Welty, D. J., and Nakai, H. (1998) Versatile action of Escherichia coli ClpXP as protease or molecular chaperone for bacteriophage Mu transposition. J. Biol. Chem. 273, 459-465
-
(1998)
J. Biol. Chem
, vol.273
, pp. 459-465
-
-
Jones, J.M.1
Welty, D.J.2
Nakai, H.3
-
21
-
-
35349018481
-
Sortagging. A versatile method for protein labeling
-
Popp, M. W., Antos, J. M., Grotenbreg, G. M., Spooner, E., and Ploegh, H. L. (2007) Sortagging. A versatile method for protein labeling. Nat. Chem. Biol. 3, 707-708
-
(2007)
Nat. Chem. Biol
, vol.3
, pp. 707-708
-
-
Popp, M.W.1
Antos, J.M.2
Grotenbreg, G.M.3
Spooner, E.4
Ploegh, H.L.5
-
22
-
-
65249086717
-
Site-specific protein labeling via sortase-mediated transpeptidation
-
Chapter 15, Unit 15.13
-
Popp, M. W., Antos, J. M., and Ploegh, H. L. (2009) Site-specific protein labeling via sortase-mediated transpeptidation. Curr. Protoc. Protein Sci., Chapter 15, Unit 15.13
-
(2009)
Curr. Protoc. Protein Sci
-
-
Popp, M.W.1
Antos, J.M.2
Ploegh, H.L.3
-
23
-
-
0032405581
-
Green fluorescent protein purification by organic extraction
-
Yakhnin, A. V., Vinokurov, L. M., Surin, A. K., and Alakhov, Y. B. (1998) Green fluorescent protein purification by organic extraction. Protein Expr. Purif. 14, 382-386
-
(1998)
Protein Expr. Purif
, vol.14
, pp. 382-386
-
-
Yakhnin, A.V.1
Vinokurov, L.M.2
Surin, A.K.3
Alakhov, Y.B.4
-
24
-
-
0037143697
-
ClpAP and ClpXP degrade proteins with tags located in the interior of the primary sequence
-
Hoskins, J. R., Yanagihara, K., Mizuuchi, K., and Wickner, S. (2002) ClpAP and ClpXP degrade proteins with tags located in the interior of the primary sequence. Proc. Natl. Acad. Sci. U.S.A. 99, 11037-11042
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 11037-11042
-
-
Hoskins, J.R.1
Yanagihara, K.2
Mizuuchi, K.3
Wickner, S.4
-
25
-
-
0032079329
-
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
-
Gottesman, S., Roche, E., Zhou, Y., and Sauer, R. T. (1998) The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev. 12, 1338-1347
-
(1998)
Genes Dev
, vol.12
, pp. 1338-1347
-
-
Gottesman, S.1
Roche, E.2
Zhou, Y.3
Sauer, R.T.4
-
26
-
-
0022515029
-
Binding of a specific ligand inhibits import of a purified precursor protein into mitochondria
-
Eilers, M., and Schatz, G. (1986) Binding of a specific ligand inhibits import of a purified precursor protein into mitochondria. Nature 322, 228-232
-
(1986)
Nature
, vol.322
, pp. 228-232
-
-
Eilers, M.1
Schatz, G.2
-
27
-
-
0030584660
-
Immunoglobulin-like modules from titin I-band. Extensible components of muscle elasticity
-
Improta, S., Politou, A. S., and Pastore, A. (1996) Immunoglobulin-like modules from titin I-band. Extensible components of muscle elasticity. Structure 4, 323-337
-
(1996)
Structure
, vol.4
, pp. 323-337
-
-
Improta, S.1
Politou, A.S.2
Pastore, A.3
-
28
-
-
0042839620
-
Titin. Properties and family relationships
-
Tskhovrebova, L., and Trinick, J. (2003) Titin. Properties and family relationships. Nat. Rev. 4, 679-689
-
(2003)
Nat. Rev
, vol.4
, pp. 679-689
-
-
Tskhovrebova, L.1
Trinick, J.2
-
29
-
-
0033669185
-
Point mutations alter the mechanical stability of immunoglobulin modules
-
Li, H., Carrion-Vazquez, M., Oberhauser, A. F., Marszalek, P. E., and Fernandez, J. M. (2000) Point mutations alter the mechanical stability of immunoglobulin modules. Nat. Struct. Biol. 7, 1117-1120
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 1117-1120
-
-
Li, H.1
Carrion-Vazquez, M.2
Oberhauser, A.F.3
Marszalek, P.E.4
Fernandez, J.M.5
-
30
-
-
0028907913
-
The role of repetitive DNA sequences in the size variation of Epstein-Barr virus (EBV) nuclear antigens and the identification of different EBV isolates using RFLP and PCR analysis
-
Falk, K., Gratama, J. W., Rowe, M., Zou, J. Z., Khanim, F., Young, L. S., Oosterveer, M. A., and Ernberg, I. (1995) The role of repetitive DNA sequences in the size variation of Epstein-Barr virus (EBV) nuclear antigens and the identification of different EBV isolates using RFLP and PCR analysis. J. Gen. Virol. 76, 779-790
-
(1995)
J. Gen. Virol
, vol.76
, pp. 779-790
-
-
Falk, K.1
Gratama, J.W.2
Rowe, M.3
Zou, J.Z.4
Khanim, F.5
Young, L.S.6
Oosterveer, M.A.7
Ernberg, I.8
-
31
-
-
0031904016
-
A minimal glycine-alanine repeat prevents the interaction of ubiquitinated i κb α with the proteasome. A new mechanism for selective inhibition of proteolysis
-
Sharipo, A., Imreh, M., Leonchiks, A., Imreh, S., and Masucci, M. G. (1998) A minimal glycine-alanine repeat prevents the interaction of ubiquitinated I κB α with the proteasome. A new mechanism for selective inhibition of proteolysis. Nat. Med. 4, 939-944
-
(1998)
Nat. Med
, vol.4
, pp. 939-944
-
-
Sharipo, A.1
Imreh, M.2
Leonchiks, A.3
Imreh, S.4
Masucci, M.G.5
-
32
-
-
0033616713
-
Mechanical and chemical unfolding of a single protein. A comparison
-
Carrion-Vazquez, M., Oberhauser, A. F., Fowler, S. B., Marszalek, P. E., Broedel, S. E., Clarke, J., and Fernandez, J. M. (1999) Mechanical and chemical unfolding of a single protein. A comparison. Proc. Natl. Acad. Sci. U.S.A. 96, 3694-3699
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 3694-3699
-
-
Carrion-Vazquez, M.1
Oberhauser, A.F.2
Fowler, S.B.3
Marszalek, P.E.4
Broedel, S.E.5
Clarke, J.6
Fernandez, J.M.7
-
33
-
-
0033539690
-
ClpA and ClpP remain associated during multiple rounds of ATP-dependent protein degradation by ClpAP protease
-
Singh, S. K., Guo, F., and Maurizi, M. R. (1999) ClpA and ClpP remain associated during multiple rounds of ATP-dependent protein degradation by ClpAP protease. Biochemistry 38, 14906-14915
-
(1999)
Biochemistry
, vol.38
, pp. 14906-14915
-
-
Singh, S.K.1
Guo, F.2
Maurizi, M.R.3
-
34
-
-
0034103269
-
EBNA-1. A protein pivotal to latent infection by Epstein-Barr virus
-
Leight, E. R., and Sugden, B. (2000) EBNA-1. A protein pivotal to latent infection by Epstein-Barr virus. Rev. Med. Virol. 10, 83-100
-
(2000)
Rev. Med. Virol
, vol.10
, pp. 83-100
-
-
Leight, E.R.1
Sugden, B.2
-
35
-
-
0041971307
-
Self-inhibition of synthesis and antigen presentation by Epstein-Barr virus-encoded EBNA1
-
Yin, Y., Manoury, B., and Fåhraeus, R. (2003) Self-inhibition of synthesis and antigen presentation by Epstein-Barr virus-encoded EBNA1. Science 301, 1371-1374
-
(2003)
Science
, vol.301
, pp. 1371-1374
-
-
Yin, Y.1
Manoury, B.2
Fåhraeus, R.3
-
36
-
-
0035875767
-
Cis-Inhibition of proteasomal degradation by viral repeats. Impact of length and amino acid composition
-
Sharipo, A., Imreh, M., Leonchiks, A., Brändén, C., and Masucci, M. G. (2001) cis-Inhibition of proteasomal degradation by viral repeats. Impact of length and amino acid composition. FEBS Lett. 499, 137-142
-
(2001)
FEBS Lett
, vol.499
, pp. 137-142
-
-
Sharipo, A.1
Imreh, M.2
Leonchiks, A.3
Brändén, C.4
Masucci, M.G.5
-
37
-
-
1042278905
-
Proteasome and peptidase function in MHC-class-I-mediated antigen presentation
-
Kloetzel, P. M., and Ossendorp, F. (2004) Proteasome and peptidase function in MHC-class-I-mediated antigen presentation. Curr. Opin. Immunol. 16, 76-81
-
(2004)
Curr. Opin. Immunol
, vol.16
, pp. 76-81
-
-
Kloetzel, P.M.1
Ossendorp, F.2
-
38
-
-
65649115267
-
Recognition and processing of ubiquitin-protein conjugates by the proteasome
-
Finley, D. (2009) Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annu. Rev. Biochem. 78, 477-513
-
(2009)
Annu. Rev. Biochem
, vol.78
, pp. 477-513
-
-
Finley, D.1
-
40
-
-
28544434064
-
A conserved processing mechanism regulates the activity of transcription factors Cubitus interruptus and NF-κB
-
Tian, L., Holmgren, R. A., and Matouschek, A. (2005) A conserved processing mechanism regulates the activity of transcription factors Cubitus interruptus and NF-κB. Nat. Struct. Mol. Biol. 12, 1045-1053
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 1045-1053
-
-
Tian, L.1
Holmgren, R.A.2
Matouschek, A.3
-
42
-
-
0026669807
-
Prediction of the activity and stability effects of site-directed mutagenesis on a protein core
-
van Gunsteren, W. F., and Mark, A. E. (1992) Prediction of the activity and stability effects of site-directed mutagenesis on a protein core. J. Mol. Biol. 227, 389-395
-
(1992)
J. Mol. Biol
, vol.227
, pp. 389-395
-
-
Van Gunsteren, W.F.1
Mark, A.E.2
-
43
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J., and Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132
-
(1982)
J. Mol. Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
44
-
-
0014349825
-
The characterization of amino acid sequences in proteins by statistical methods
-
Zimmerman, J. M., Eliezer, N., and Simha, R. (1968) The characterization of amino acid sequences in proteins by statistical methods. J. Theor. Biol. 21, 170-201
-
(1968)
J. Theor. Biol
, vol.21
, pp. 170-201
-
-
Zimmerman, J.M.1
Eliezer, N.2
Simha, R.3
|