-
1
-
-
0029643523
-
Protein folding intermediates: Native-state hydrogen exchange
-
Bai Y., Sosnick T.R., Mayne L., Englander S.W. Protein folding intermediates. native-state hydrogen exchange Science. 269:1995;192-197.
-
(1995)
Science
, vol.269
, pp. 192-197
-
-
Bai, Y.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
2
-
-
0037248908
-
ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation
-
Benaroudj N., Zwickl P., Seemuller E., Baumeister W., Goldberg A.L. ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation. Mol. Cell. 11:2003;69-78.
-
(2003)
Mol. Cell
, vol.11
, pp. 69-78
-
-
Benaroudj, N.1
Zwickl, P.2
Seemuller, E.3
Baumeister, W.4
Goldberg, A.L.5
-
3
-
-
0035875890
-
Effects of protein stability and structure on substrate processing by the ClpXP unfolding and degradation machine
-
a
-
Burton R.E., Siddiqui S.M., Kim Y.I., Baker T.A., Sauer R.T. Effects of protein stability and structure on substrate processing by the ClpXP unfolding and degradation machine. EMBO J. 20:2001;3092-3100. a.
-
(2001)
EMBO J.
, vol.20
, pp. 3092-3100
-
-
Burton, R.E.1
Siddiqui, S.M.2
Kim, Y.I.3
Baker, T.A.4
Sauer, R.T.5
-
4
-
-
0034840284
-
ClpX-mediated remodeling of mu transposasomes: Selective unfolding of subunits destabilizes the entire complex
-
b
-
Burton B.M., Williams T.L., Baker T.A. ClpX-mediated remodeling of mu transposasomes. selective unfolding of subunits destabilizes the entire complex Mol. Cell. 8:2001;449-454. b.
-
(2001)
Mol. Cell
, vol.8
, pp. 449-454
-
-
Burton, B.M.1
Williams, T.L.2
Baker, T.A.3
-
5
-
-
0037407940
-
Energy-dependent degradation: Linkage between ClpX-catalyzed nucleotide hydrolysis and protein-substrate processing
-
Burton R.E., Baker T.A., Sauer R.T. Energy-dependent degradation. linkage between ClpX-catalyzed nucleotide hydrolysis and protein-substrate processing Protein Sci. 12:2003;893-902.
-
(2003)
Protein Sci.
, vol.12
, pp. 893-902
-
-
Burton, R.E.1
Baker, T.A.2
Sauer, R.T.3
-
6
-
-
0033616713
-
Mechanical and chemical unfolding of a single protein: A comparison
-
Carrion-Vasquez M., Oberhauser A.F., Fowler S.B., Marszalek P.E., Broedel S.E., Clarke J., Fernandez J.M. Mechanical and chemical unfolding of a single protein. a comparison Proc. Natl. Acad. Sci. USA. 96:1999;3694-3699.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3694-3699
-
-
Carrion-Vasquez, M.1
Oberhauser, A.F.2
Fowler, S.B.3
Marszalek, P.E.4
Broedel, S.E.5
Clarke, J.6
Fernandez, J.M.7
-
7
-
-
0042508740
-
The mechanical stability of ubiquitin is linkage dependent
-
in press
-
Carrion-Vasquez M., Li H., Lu H., Marszalek P.E., Oberhauser A.F., Fernandez J.M. The mechanical stability of ubiquitin is linkage dependent. Nat. Struct. Biol. in press:2003.
-
(2003)
Nat. Struct. Biol.
-
-
Carrion-Vasquez, M.1
Li, H.2
Lu, H.3
Marszalek, P.E.4
Oberhauser, A.F.5
Fernandez, J.M.6
-
8
-
-
0029746061
-
Detection of partially folded molecules in equilibrium with the native conformation of RNaseH
-
Chamberlain A.K., Handel T.M., Marqusee S. Detection of partially folded molecules in equilibrium with the native conformation of RNaseH. Nat. Struct. Biol. 3:1996;782-787.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 782-787
-
-
Chamberlain, A.K.1
Handel, T.M.2
Marqusee, S.3
-
9
-
-
0037351068
-
Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals
-
Flynn J.M., Neher S.B., Kim Y.I., Sauer R.T., Baker T.A. Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals. Mol. Cell. 11:2003;671-683.
-
(2003)
Mol. Cell
, vol.11
, pp. 671-683
-
-
Flynn, J.M.1
Neher, S.B.2
Kim, Y.I.3
Sauer, R.T.4
Baker, T.A.5
-
10
-
-
0034984382
-
Mapping the folding pathway of an immunoglobulin domain: Structural detail from phi value analysis and movement of the transition state
-
Fowler S.B., Clarke J. Mapping the folding pathway of an immunoglobulin domain. structural detail from phi value analysis and movement of the transition state Structure. 9:2001;355-366.
-
(2001)
Structure
, vol.9
, pp. 355-366
-
-
Fowler, S.B.1
Clarke, J.2
-
11
-
-
0036389817
-
Mechanical unfolding of a titin Ig domain: Structure of unfolding intermediate revealed by combining AFM, molecular dynamics, NMR and protein engineering
-
Fowler S.B., Best R.B., Toca Herrera J.L., Rutherford T.J., Steward A., Paci E., Karplus M., Clarke J. Mechanical unfolding of a titin Ig domain. structure of unfolding intermediate revealed by combining AFM, molecular dynamics, NMR and protein engineering J. Mol. Biol. 322:2002;841-849.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 841-849
-
-
Fowler, S.B.1
Best, R.B.2
Toca Herrera, J.L.3
Rutherford, T.J.4
Steward, A.5
Paci, E.6
Karplus, M.7
Clarke, J.8
-
12
-
-
0033553474
-
Recognition, targeting, and hydrolysis of the λ O replication protein by the ClpP/ClpX protease
-
Gonciarz-Swiatek M., Wawrzynow A., Um S.J., Learn B.A., McMacken R., Kelley W.L., Georgopoulos C., Sliekers O., Zylicz M. Recognition, targeting, and hydrolysis of the λ O replication protein by the ClpP/ClpX protease. J. Biol. Chem. 274:1999;13999-14005.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 13999-14005
-
-
Gonciarz-Swiatek, M.1
Wawrzynow, A.2
Um, S.J.3
Learn, B.A.4
McMacken, R.5
Kelley, W.L.6
Georgopoulos, C.7
Sliekers, O.8
Zylicz, M.9
-
13
-
-
0032079329
-
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
-
Gottesman S., Roche E., Zhou Y., Sauer R.T. The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes Dev. 12:1998;1338-1347.
-
(1998)
Genes Dev.
, vol.12
, pp. 1338-1347
-
-
Gottesman, S.1
Roche, E.2
Zhou, Y.3
Sauer, R.T.4
-
14
-
-
0344211512
-
Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH
-
Herman C., Prakash S., Lu C.Z., Matouschek A., Gross C.A. Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol. Cell. 11:2003;659-669.
-
(2003)
Mol. Cell
, vol.11
, pp. 659-669
-
-
Herman, C.1
Prakash, S.2
Lu, C.Z.3
Matouschek, A.4
Gross, C.A.5
-
15
-
-
0033598719
-
Structural distribution of stability in a thermophilic enzyme
-
Hollien J., Marqusee S. Structural distribution of stability in a thermophilic enzyme. Proc. Natl. Acad. Sci. USA. 96:1999;13674-13678.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 13674-13678
-
-
Hollien, J.1
Marqusee, S.2
-
16
-
-
0030584660
-
Immunoglobulin-like modules from titin I-band: Extensible components of muscle elasticity
-
Improta S., Politou A.S., Pastore A. Immunoglobulin-like modules from titin I-band. extensible components of muscle elasticity Structure. 4:1996;323-337.
-
(1996)
Structure
, vol.4
, pp. 323-337
-
-
Improta, S.1
Politou, A.S.2
Pastore, A.3
-
17
-
-
0030024281
-
Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
-
Keiler K.C., Waller P.R.H., Sauer R.T. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science. 271:1996;990-993.
-
(1996)
Science
, vol.271
, pp. 990-993
-
-
Keiler, K.C.1
Waller, P.R.H.2
Sauer, R.T.3
-
18
-
-
0033638255
-
Dynamics of substrate denaturation and translocation by the ClpXP degradation machine
-
Kim Y.I., Burton R.E., Burton B.M., Sauer R.T., Baker T.A. Dynamics of substrate denaturation and translocation by the ClpXP degradation machine. Mol. Cell. 5:2000;639-648.
-
(2000)
Mol. Cell
, vol.5
, pp. 639-648
-
-
Kim, Y.I.1
Burton, R.E.2
Burton, B.M.3
Sauer, R.T.4
Baker, T.A.5
-
19
-
-
0034194179
-
AAA proteases: Cellular machines for degrading membrane proteins
-
Langer T. AAA proteases. cellular machines for degrading membrane proteins Trends Biochem. Sci. 25:2000;247-251.
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 247-251
-
-
Langer, T.1
-
20
-
-
0035266072
-
ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal
-
Lee C., Schwartz M.P., Prakash S., Iwakura M., Matouschek A. ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal. Mol. Cell. 7:2001;627-637.
-
(2001)
Mol. Cell
, vol.7
, pp. 627-637
-
-
Lee, C.1
Schwartz, M.P.2
Prakash, S.3
Iwakura, M.4
Matouschek, A.5
-
21
-
-
0033669185
-
Point mutations alter the mechanical stability of immunoglobulin modules
-
Li H., Carrion-Vasquez M., Oberhauser A.F., Marszalek P.E., Fernandez J.M. Point mutations alter the mechanical stability of immunoglobulin modules. Nat. Struct. Biol. 7:2000;1117-1120.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1117-1120
-
-
Li, H.1
Carrion-Vasquez, M.2
Oberhauser, A.F.3
Marszalek, P.E.4
Fernandez, J.M.5
-
22
-
-
0031848099
-
Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation
-
Liu H., Isralewitz B., Krammer A., Vogel V., Schulten K. Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. Biophys. J. 75:1998;662-671.
-
(1998)
Biophys. J.
, vol.75
, pp. 662-671
-
-
Liu, H.1
Isralewitz, B.2
Krammer, A.3
Vogel, V.4
Schulten, K.5
-
23
-
-
0037058989
-
Single pilus motor forces exceed 100 pN
-
Maier B., Potter L., So M., Seifert H.S., Sheetz M.P. Single pilus motor forces exceed 100 pN. Proc. Natl. Acad. Sci. USA. 99:2002;16012-16017.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16012-16017
-
-
Maier, B.1
Potter, L.2
So, M.3
Seifert, H.S.4
Sheetz, M.P.5
-
24
-
-
0033523904
-
Mechanical unfolding intermediates in titin modules
-
Marszalek P.E., Lu H., Li H., Carrion-Vasquez M., Oberhauser A.F., Schulten K., Fernandez J.M. Mechanical unfolding intermediates in titin modules. Nature. 402:1999;100-103.
-
(1999)
Nature
, vol.402
, pp. 100-103
-
-
Marszalek, P.E.1
Lu, H.2
Li, H.3
Carrion-Vasquez, M.4
Oberhauser, A.F.5
Schulten, K.6
Fernandez, J.M.7
-
25
-
-
0037308999
-
Protein unfolding - an important process in vivo?
-
Matouschek A. Protein unfolding - an important process in vivo? Curr. Opin. Struct. Biol. 13:2003;98-109.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 98-109
-
-
Matouschek, A.1
-
26
-
-
0032969563
-
Aaa+: A class of chaperone-like atpases associated with the assembly, operation, and disassembly of protein complexes
-
Neuwald A.F., Aravind L., Spouge J.L., Koonin E.V. Aaa+. a class of chaperone-like atpases associated with the assembly, operation, and disassembly of protein complexes Genome Res. 9:1999;27-43.
-
(1999)
Genome Res.
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravind, L.2
Spouge, J.L.3
Koonin, E.V.4
-
27
-
-
0023809599
-
+-ATPase activity
-
+-ATPase activity. Methods Enzymol. 156:1988;116-119.
-
(1988)
Methods Enzymol.
, vol.156
, pp. 116-119
-
-
Norby, J.G.1
-
28
-
-
0034885052
-
AAA+ superfamily ATPases: Common structure-diverse function
-
Ogura T., Wilkinson A.J. AAA+ superfamily ATPases. common structure-diverse function Genes Cells. 6:2001;575-597.
-
(2001)
Genes Cells
, vol.6
, pp. 575-597
-
-
Ogura, T.1
Wilkinson, A.J.2
-
29
-
-
0037119954
-
Alternating translocation of protein substrates from both ends of ClpXP protease
-
Ortega J., Lee H.S., Maurizi M.R., Steven A.C. Alternating translocation of protein substrates from both ends of ClpXP protease. EMBO J. 21:2002;4938-4949.
-
(2002)
EMBO J.
, vol.21
, pp. 4938-4949
-
-
Ortega, J.1
Lee, H.S.2
Maurizi, M.R.3
Steven, A.C.4
-
30
-
-
0023697408
-
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl-chymotrypsin using different denaturants
-
Santoro M.M., Bolen D.W. Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl-chymotrypsin using different denaturants. Biochemistry. 27:1988;8063-8068.
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
-
31
-
-
0034254908
-
Unfolding and internalization of proteins by the ATP-dependent proteases ClpXP and ClpAP
-
Singh S.K., Grimaud R., Hoskins J.R., Wickner S., Maurizi M.R. Unfolding and internalization of proteins by the ATP-dependent proteases ClpXP and ClpAP. Proc. Natl. Acad. Sci. USA. 97:2000;8898-8903.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 8898-8903
-
-
Singh, S.K.1
Grimaud, R.2
Hoskins, J.R.3
Wickner, S.4
Maurizi, M.R.5
-
32
-
-
0028305742
-
Activity and specificity of Escherichia coli ClpAP protease in cleaving model peptide substrates
-
Thompson M.W., Maurizi M.R. Activity and specificity of Escherichia coli ClpAP protease in cleaving model peptide substrates. J. Biol. Chem. 269:1994;18201-18208.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18201-18208
-
-
Thompson, M.W.1
Maurizi, M.R.2
-
33
-
-
0028365133
-
Processive degradation of proteins by the ATP-dependent Clp protease from Escherichia coli. Requirement for the multiple array of active sites in ClpP but not ATP hydrolysis
-
Thompson M.W., Singh S.K., Maurizi M.R. Processive degradation of proteins by the ATP-dependent Clp protease from Escherichia coli. Requirement for the multiple array of active sites in ClpP but not ATP hydrolysis. J. Biol. Chem. 269:1994;18209-18215.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18209-18215
-
-
Thompson, M.W.1
Singh, S.K.2
Maurizi, M.R.3
-
34
-
-
0034632063
-
AAA proteins. Lords of the ring
-
Vale R.D. AAA proteins. Lords of the ring. J. Cell Biol. 150:2000;13-19.
-
(2000)
J. Cell Biol.
, vol.150
, pp. 13-19
-
-
Vale, R.D.1
-
35
-
-
0036848756
-
Characterization of a specificity factor for an AAA+ ATPase: Assembly of SspB dimers with ssrA-tagged proteins and the ClpX hexamer
-
Wah D.A., Levchenko I., Baker T.A., Sauer R.T. Characterization of a specificity factor for an AAA+ ATPase. assembly of SspB dimers with ssrA-tagged proteins and the ClpX hexamer Chem. Biol. 9:2002;1237-1245.
-
(2002)
Chem. Biol.
, vol.9
, pp. 1237-1245
-
-
Wah, D.A.1
Levchenko, I.2
Baker, T.A.3
Sauer, R.T.4
-
36
-
-
0030691115
-
The structure of ClpP at 2.3 Å resolution suggests a model for ATP-dependent proteolysis
-
Wang J., Hartling J.A., Flanagan J.M. The structure of ClpP at 2.3 Å resolution suggests a model for ATP-dependent proteolysis. Cell. 91:1997;447-456.
-
(1997)
Cell
, vol.91
, pp. 447-456
-
-
Wang, J.1
Hartling, J.A.2
Flanagan, J.M.3
|