Planktonic larvae do not ensure gene flow in the edible sea urchin Paracentrotus lividus

Marine Ecology Progress Series

Volumn 480, Issue , 2013, Pages 155-170

  Penant, Gwilherm ^a   Aurelle, Didier ^a   Feral, Jean Pierre ^a   Chenuil, Anne ^a  

^a AVIGNON UNIVERSITÉ   (France)

Author keywords

Divergence time; FST ST; Genetic structure; Mitochondrial DNA; Nuclear EPIC; Phylogeography

Indexed keywords

DIVERGENCE; ECHINODERM; EDIBLE SPECIES; GENE FLOW; GENETIC MARKER; GENETIC STRUCTURE; HARVESTING; LARVA; MITOCHONDRIAL DNA; PATCHINESS; PHYLOGEOGRAPHY; ZOOPLANKTON;

ATLANTIC OCEAN; MEDITERRANEAN SEA;

ECHINOIDEA; PARACENTROTUS LIVIDUS;

EID: 84876860468     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps10194     Document Type: Article

References (102)

1. Almogi-Labin A (2011) The paleoclimate of the eastern Mediterranean during the transition from early to mid pleistocene (900 to 700 ka) based on marine and nonmarine records: an integrated overview. J Hum Evol 60: 428-436
2. Arculeo M, Lo Brutto S, Pancucci MP, Cammarata M, Parrinello N (1998) Allozyme similarity in two morphologically distinguishable populations of Paracentrotus lividus (Echinodermata) from distinct areas of the Mediterranean coast. J Mar Biol Assoc UK 78: 231-238
3. Arnaud Haond S, Migliaccio M, Diaz Almela E, Teixeira S and others (2007) Vicariance patterns in the Mediterranean Sea: east-west cleavage and low dispersal in the endemic seagrass Posidonia oceanica. J Biogeogr 34: 963-976
4. Arndt A, Marquez C, Lambert P, SmithMJ (1996) Molecular phylogeny of eastern Pacific sea cucumbers (Echino - dermata: Holothuroidea) based on mitochondrial DNA sequence. Mol Phylogenet Evol 6: 425-437
5. Aurelle D, Ledoux JB, Rocher C, Borsa P, Chenuil A, Feral JP (2011) Phylogeography of the red coral (Corallium rubrum): inferences on the evolutionary history of a temperate gorgonian. Genetica 139: 855-869
6. Avise JC (1998) Conservation genetics in the marine realm. J Hered 89: 377-382
7. Avise JC (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge, M.A.
8. Bahri-Sfar L, Lemaire C, Hassine OKB, Bonhomme F (2000) Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism. Proc R Soc Lond B Biol Sci 267: 929-935
9. Ballard JWO, Whitlock MC (2004) The incomplete natural history of mitochondria. Mol Ecol 13: 729-744
10. Bargelloni L, Alarcon J, Alvarez M, Penzo E, Magoulas A, Palma J, Patarnello T (2005) The Atlantic-Mediterranean transition: discordant genetic patterns in two seabream species, Diplodus puntazzo (Cetti) and Diplodus sargus (L.). Mol Phylogenet Evol 36: 523-535
11. Baus E, Darrock DJ, Bruford MW (2005) Gene-flow patterns in Atlantic and Mediterranean populations of the Lusitanian sea star Asterina gibbosa. Mol Ecol 14: 3373-3382
12. Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 57: 289-300
13. Bierne N, Welch J, Loire E, Bonhomme F, David P (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Mol Ecol 20: 2044-2072
14. Boissin E, Feral JP, Chenuil A (2008a) Defining reproductively isolated units in a cryptic and syntopic species complex using mitochondrial and nuclear markers: the brooding brittle star, Amphipholis squamata (Ophiuroidea). Mol Ecol 17: 1732-1744
15. Boissin E, Hoareau TB, Féral JP, Chenuil A (2008b) Extreme selfing rates in the cosmopolitan brittle star species complex Amphipholis squamata: data from progeny-array and heterozygote deficiency. Mar Ecol Prog Ser 361: 151-159
16. Boissin E, Stöhr S, Chenuil A (2011) Did vicariance and adaptation drive cryptic speciation and evolution of brooding in Ophioderma longicauda (Echinodermata: Ophiuroidea), a common Atlanto-Mediterranean ophiuroid? Mol Ecol 20: 4737-4755
17. Borrero-Pérez GH, González-Wanguemert M, Marcos C, Pérez-Ruzafa A (2011) Phylogeography of the Atlanto- Mediterranean sea cucumber Holothuria (Holothuria) mammata: the combined effects of historical processes and current oceanographical pattern. Mol Ecol 20: 1964-1975
18. Borsa P, Naciri M, Bahri L, Chikhi L, Garcia De Leon FJ, Kotoulas G, Bonhomme F (1997a) Infraspecific zoogeography of the Mediterranean: population genetic analysis on sixteen Atlanto-Mediterranean species (fishes and invertebrates). Vie Milieu 47: 295-305
19. Borsa P, Blanquer A, Berrebi P (1997b) Genetic structure of the flounders Platichthys flesus and P. stellatus at different geographic scales. Mar Biol 129: 233-246
20. Boudouresque CF, Verlaque M (2007) Ecology of Paracentrotus lividus. In: Lawrence JM (ed) Edible sea urchins: biology and ecology. Elsevier, Amsterdam, p 243-286
21. Calderón I, Turon X (2010) Temporal genetic variability in the Mediterranean common sea urchin Paracentrotus lividus. Mar Ecol Prog Ser 408: 149-159
22. Calderón I, Giribet G, Turon X (2008) Two markers and one history: phylogeography of the edible common sea urchin Paracentrotus lividus in the Lusitanian region. Mar Biol 154: 137-151
23. Calderón I, Palacìn C, Turon X (2009a) Microsatellite mar - kers reveal shallow genetic differentiation between co - horts of the common sea urchin Paracentrotus lividus (Lamarck) in northwest Mediterranean. Mol Ecol 18: 3036-3049
24. Calderón I, Turon X, Lessios HA (2009b) Characterization of the sperm molecule bindin in the sea urchin genus Paracentrotus. J Mol Evol 68: 366-376
25. Calderón I, Pita L, Brusciotti S, Palacin C, Turon X (2012) Time and space: genetic structure of the cohorts of the common sea urchin Paracentrotus lividus in Western Mediterranean. Mar Biol 159: 187-197
26. Calvo M, Templado J, Oliverio M, Machordom A (2009) Hidden Mediterranean biodiversity: molecular evidence for a cryptic species complex within the reef building vermetid gastropod Dendropoma petraeum (Mollusca: Caenogastropoda). Biol J Linn Soc 96: 898-912
27. Castilho R, Ciftci Y (2005) Genetic differentiation between close eastern Mediterranean Dicentrarchus labrax (L.) populations. J Fish Biol 67: 1746-1752
28. Chaoui L, Kara MH, Quignard JP, Faure E, Bonhomme F (2009) Forte différenciation génétique de la daurade Sparus aurata (L., 1758) entre les deux rives de la Méditerranée occidentale. C R Biol 332: 329-335
29. Chatti N, Zitari-Chatti R, Attia MH, Ben Khadra Y, Said K (2012) Very low mitochondrial diversity and genetic homogeneity in the starfish Echinaster sepositus along the Tunisian coast. Biochem Genet 50: 45-51
30. Chenuil A, Egea E, Rocher C, Touzet H, Feral JP (2008) Does hybridization increase evolutionary rate? Data from the 28S-rDNA D8 domain in echinoderms. J Mol Evol 67: 539-550
31. Chenuil A, Hoareau TB, Egea E, Penant G and others (2010) An efficient method to find potentially universal population genetic markers, applied to metazoans. BMC Evol Biol 10: 276
32. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659
33. Coll M, Piroddi C, Steenbeek J, Kaschner K and others (2010) The biodiversity of the Mediterranean Sea: estimates, patterns, and threats. PLoS ONE 5: e11842
34. Crandall ED, Sbrocco EJ, DeBoer TS, Barber PH, Carpenter KE (2012) Expansion dating: calibrating molecular clocks in marine species from expansions onto the Sunda Shelf following the Last Glacial Maximum. Mol Biol Evol 29: 707-719
35. D'Ortenzio F, Ribera DA (2008) On the trophic regimes of the Mediterranean Sea: a satellite analysis. Biogeosci Discuss 5: 2959-2983
36. Domingues VS, Bucciarelli G, Almada VC, Bernardi G (2005) Historical colonization and demography of the Mediterranean damselfish, Chromis chromis. Mol Ecol 14: 4051-4063
37. Drummond AJ, Rambaut A (2007) Beast: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214
38. Duran S, Palacin C, Becerro MA, Turon X, Giribet G (2004) Genetic diversity and population structure of the commercially harvested sea urchin Paracentrotus lividus (Echinodermata: Echinoidea). Mol Ecol 13: 3317-3328
39. Egea E (2011) Histoire évolutive, structures géné tique, morphologique et écologique comparées dans un complexe d'espèces jumelles: Echinocardium cordatum (Echinoidea, Irregularia). PhD thesis, Aix-Marseille Université, Marseille
40. Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics ana - lyses under Linux and Windows. Mol Ecol Resour 10: 564-567
41. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491
42. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925
43. Galtier N, Nabholz B, Glemin S, Hurst G (2009) Mitochon - drial DNA as a marker of molecular diversity: a reapprai - sal. Mol Ecol 18: 4541-4550
44. Grant WS, Spies IB, Canino MF (2006) Biogeographic evidence for selection on mitochondrial DNA in North Pacific walleye pollock Theragra chalcogramma. J Hered 97: 571-580
45. Guidetti P (2006) Marine reserves reestablish lost predatory interactions and cause community changes in rocky reefs. Ecol Appl 16: 963-976
46. Hasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochond - rial DNA. J Mol Evol 22: 160-174
47. Hayes A, Kucera M, Kallel N, Sbaffi L, Rohling EJ (2005) Glacial Mediterranean Sea surface temperatures based on planktonic foraminiferal assemblages. Quat Sci Rev 24: 999-1016
48. Head MJ, Pillans B, Farquhar SA (2008) The Early-Middle Pleistocene Transition: characterization and proposed guide for the defining boundary. Episodes 31: 255-259
49. Hey J (2010) Isolation with migration models for more than two populations. Mol Biol Evol 27: 905
50. Hudson RR, Turelli M (2003) Stochasticity overrules the 'three-times rule': genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA. Evolution 57: 182-190
51. Iuri V, Patti F, Procaccini G (2007) Phylogeography of the sea urchin Paracentrotus lividus (Lamarck) (Echinodermata: Echinoidea): first insights from the south Tyrrhenian Sea. In: Relini G, Ryland J (eds) Biodiversity in enclosed seas and artificial marine habitats. Springer, Dordrecht, p 77-84
52. Johnson MS, Black R (1984) Pattern beneath the chaos: the effect of recruitment on genetic patchiness in an intertidal limpet. Evolution 38: 1371-1383
53. Lessios HA, Kessing B, Robertson DR, Paulay G (1999) Phylogeography of the pantropical sea urchin Eucidaris in relation to land barriers and ocean currents. Evolution 53: 806-817
54. Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451
55. Lopéz S, Turon X, Montero E, Palacín C, Duarte CM, Tarjuelo I (1998) Larval abundance, recruitment and early mortality in Paracentrotus lividus (Echinoidea). Inter - annual variability and plankton-benthos coupling. Mar Ecol Prog Ser 172: 239-251
56. Louise F, Benard F (1993) Déterminisme génétique du polychromatisme de Paracentrotus lividus (Lamarck) [Genetic determination of polychromatism of Paracentrotus lividus (Lamarck)]. Bull Soc Zool Fr 118: 405-408 (in French with English Abstract)
57. Louise F, Benard F (1995a) Déterminisme génétique de la costulation des piquants de Paracentrotus lividus (La - marck): première observation [Genetic determination in costulation of spines of Paracentrotus lividus (Lamarck): first observation]. Bull Soc Zool Fr 120: 57-60 (in French with English Abstract)
58. Louise F, Benard F (1995b) Déterminisme génétique du polychromatisme de Paracentrotus lividus (Lamarck). II: Etude préliminaire de quelques phénotypes colorés [Genetic determination in polychromatism of Paracentrotus lividus (Lamarck). II: Preliminary study of several coloured phenotypes]. Bull Soc Zool Fr 120: 61-64 (in French with English Abstract)
59. Lozano J, Galera J, López S, Turon X, Palacín C, Morera G (1995) Biological cycles and recruitment of Paracentrotus lividus (Echinodermata: Echinoidea) in two contrasting habitats. Mar Ecol Prog Ser 122: 179-191
60. Luttikhuizen PC, Campos J, van Bleijswijk J, Peijnenburg K, van der Veer HW (2008) Phylogeography of the common shrimp, Crangon crangon (L.) across its distribution range. Mol Phylogenet Evol 46: 1015-1030
61. Maggio T, Lo Brutto S, Garoia F, Tinti F, Arculeo M (2009) Microsatellite analysis of red mullet Mullus barbatus (Perciformes, Mullidae) reveals the isolation of the Adriatic basin in the Mediterranean Sea. ICES J Mar Sci 66: 1883-1891
62. Magoulas A, Castilho R, Caetano S, Marcato S, Patarnello T (2006) Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus). Mol Phylogenet Evol 39: 734-746
63. Maltagliati F, Di Giuseppe G, Barbieri M, Castelli A, Dini F (2010) Phylogeography and genetic structure of the edible sea urchin Paracentrotus lividus (Echinodermata: Echinoidea) inferred from the mitochondrial cyto - chrome b gene. Biol J Linn Soc 100: 910-923
64. McCartney MA, Keller G, Lessios HA (2000) Dispersal barriers in tropical oceans and speciation in Atlantic and eastern Pacific sea urchins of the genus Echinometra. Mol Ecol 9: 1391-1400
65. Micheli F, Benedetti-Cecchi L, Gambaccini S, Bertocci I, Borsini C, Chato Osio G, Romano F (2005) Cascading human impacts, marine protected areas, and the structure of Mediterranean reef assemblages. Ecol Monogr 75: 81-102
66. Millot C (1999) Circulation in the Western Mediterranean Sea. J Mar Syst 20: 423-442
67. Muller K (2005) SeqState: Primer design and sequence statistics for phylogenetic DNA datasets. Appl Bioinform 4: 35-69
68. Nielsen R, Wakeley J (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885-896
69. Palero F, Abello P, Macpherson E, Gristina M, Pascual M (2008) Phylogeography of the European spiny lobster (Palinurus elephas): influence of current oceanographical features and historical processes. Mol Phylogenet Evol 48: 708-717
70. Pannacciulli F, Bishop J, Hawkins S (1997) Genetic structure of populations of two species of Chthamalus (Crustacea: Cirripedia) in the north-east Atlantic and Mediterranean. Mar Biol 128: 73-82
71. Patarnello T, Volckaert F, Castilho R (2007) Pillars of Hercules: Is the Atlantic-Mediterranean transition a phylogeographical break? Mol Ecol 16: 4426-4444
72. Pedrotti M (1993) Spatial and temporal distribution and recruitment of echinoderm larvae in the Ligurian Sea. J Mar Biol Assoc UK 73: 513-530
73. Peijnenburg KTCA, Fauvelot C, Breeuwer AJ, Menken SBJ (2006) Spatial and temporal genetic structure of the planktonic Sagitta setosa (Chaetognatha) in European seas as revealed by mitochondrial and nuclear DNA markers. Mol Ecol 15: 3319-3338
74. Penant G (2012) Structure génétique et dispersion en milieu marin: le cas de l'oursin commun Paracentrotus lividus et du sar commun Diplodus sargus. PhD thesis, Aix-Marseille Université, Marseille
75. Pérez-Losada M, Guerra A, Sanjuan A (1999) Allozyme differentiation in the cuttlefish Sepia officinalis (Mollusca: Cephalopoda) from the NE Atlantic and Mediterranean. Heredity 83: 280-289
76. Petit RJ, El Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conserv Biol 12: 844-855
77. Pinnegar JK, Polunin NVC, Francour P, Badalamenti F and others (2000) Trophic cascades in benthic marine ecosystems: lessons for fisheries and protected area management. Environ Conserv 27: 179-200
78. Posada D (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253
79. Ramos-Onsins SE, Rozas J (2002) Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19: 2092
80. Raymond M, Rousset F (1995) Genepop (version 1.2) - Population genetics software for exact tests and ecumenism. J Hered 86: 246-249
81. Rizzo C, Cammarata M, Di Carlo M, Pancucci A, Parrinello N (2009) RAPD profiles distinguish Paracentrotus lividus populations living in a stressing environment (Amvra - kikos Gulf, Greece). Russ J Genet 45: 499-503
82. Ruzzante DE, Mariani S, Bekkevold D, Andre C and others (2006) Biocomplexity in a highly migratory pelagic marine fish, Atlantic herring. Proc R Soc Lond B Biol Sci 273: 1459-1464
83. Ryman N, Palm S (2006) POWSIM: a computer program for assessing statistical power when testing for genetic differentiation. Mol Ecol Notes 6: 600-602
84. Ryman N, Palm S, Andre C, Carvalho GR and others (2006) Power for detecting genetic divergence: differences between statistical methods and marker loci. Mol Ecol 15: 2031-2045
85. Saavedra C, Zapata C, Guerra A, Alvarez G (1993) Allozyme variation in European populations of the oyster Ostrea edulis. Mar Biol 115: 85-95
86. Sala E, Ribes M, Hereu B, Zabala M, Alvà V, Coma R, Garrabou J (1998) Temporal variability in abundance of the sea urchins Paracentrotus lividus and Arbacia lixula in the northwestern Mediterranean: comparison be - tween a marine reserve and an unprotected area. Mar Ecol Prog Ser 168: 135-145
87. Sellem F, Guillou M(2007) Reproductive biology of Paracentrotus lividus (Echinodermata: Echinoidea) in two contrasting habitats of northern Tunisia (south-east Mediterranean). J Mar Biol Assoc UK 87: 763-767
88. Siegel D, Mitarai S, Costello C, Gaines S, Kendall B, Warner R, Winters K (2008) The stochastic nature of larval connectivity among nearshore marine populations. Proc Natl Acad Sci USA 105: 8974
89. Smith AB, Pisani D, Mackenzie-Dodds JA, Stockley B, Webster BL, Littlewood DTJ (2006) Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata). Mol Biol Evol 23: 1832-1851
90. So JJ, Uthicke S, Hamel JF, Mercier A (2011) Genetic population structure in a commercial marine invertebrate with long-lived lecithotrophic larvae: Cucumaria frondosa (Echinodermata: Holothuroidea). Mar Biol 158: 859-870
91. Sotelo G, Moran P, Posada D (2009) Molecular phylogeny and biogeographic history of the European Maja spider crabs (Decapoda, Majidae). Mol Phylogenet Evol 53: 314-319
92. Strasburg JL, Riesberg LH (2010) How robust are 'isolation with migration' analyses to violations of the IM model? A simulation study. Mol Biol Evol 27: 297-310
93. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595
94. Tarnowska K, Chenuil A, Nikula R, Féral JP, Wolowicz M (2010) Complex genetic population structure of the bivalve Cerastoderma glaucum in a highly fragmented lagoon habitat. Mar Ecol Prog Ser 406: 173-184
95. Tarnowska K, Krakau M, Jacobsen S, Wolowicz M, Féral JP, Chenuil A (2012) Comparative phylogeography of two sister (congeneric) species of cardiid bivalve: strong influence of habitat, life history and post-glacial history. Estuar Coast Shelf Sci 107: 150-158
96. Thiede J (1978) A glacial Mediterranean. Nature 276: 680-683
97. Timmers MA, Bird CE, Skillings DJ, Smouse PE, Toonen RJ (2012) There's no place like home: crown-of-thorns outbreaks in the central Pacific are regionally derived and independent events. PLoS ONE 7: e31159
98. Weersing K, Toonen RJ (2009) Population genetics, larval dispersal, and connectivity in marine systems. Mar Ecol Prog Ser 393: 1-12
99. Weir B, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370
100. Xavier R, Santos AM, Harris DJ, Sezgin M, Machado M, Branco M (2012) Phylogenetic analysis of the northeast Atlantic and Mediterranean species of the genus Stenosoma (Isopoda, Valvifera, Idoteidae). Zool Scr 41: 386-399
101. Zitari-Chatti R, Chatti N, Fulgione D, Caiazza I and others (2009) Mitochondrial DNA variation in the caramote prawn Penaeus (Melicertus) kerathurus across a transition zone in the Mediterranean Sea. Genetica 136: 439-447
102. Zulliger DE, Tanner S, Ruch M, Ribi G (2009) Genetic structure of the high dispersal Atlanto-Mediterreanean sea star Astropecten aranciacus revealed by mitochondrial DNA sequences and microsatellite loci. Mar Biol 156: 597-610