Defining reproductively isolated units in a cryptic and syntopic species complex using mitochondrial and nuclear markers: The brooding brittle star, Amphipholis squamata (Ophiuroidea)

Molecular Ecology

Volumn 17, Issue 7, 2008, Pages 1732-1744

  Boissin, E ^a   Feral J P ^a   Chenuil, A ^a  

^a AIX MARSEILLE UNIVERSITY   (France)

Author keywords

Marine realm; Microsatellites; Mitochondrial lineages; Reproductive isolation; Speciation; Species complex

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA; RIBOSOME DNA;

ANIMAL; ARTICLE; GENE FLOW; GENETIC VARIABILITY; GENETICS; INTRON; MEDITERRANEAN SEA; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; REPRODUCTION; SEQUENCE ALIGNMENT; STARFISH;

ANIMALS; BASE SEQUENCE; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL; GENE FLOW; INTRONS; MEDITERRANEAN SEA; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REPRODUCTION; SEQUENCE ALIGNMENT; STARFISH; VARIATION (GENETICS);

AMPHIPHOLIS SQUAMATA; OPHIUROIDEA;

EID: 41149102986     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03652.x     Document Type: Article

References (55)

1. Alvà V (1996) Reproduction, développement, incubation et dynamique de population de l'Ophiure Amphipholis squamata (Echinodermata) en Baie de Seine. PhD Thesis, Université Libre de Bruxelles, Bruxelles.
2. Atarhouch T, Rami M, Cattaneo-Berrebi G et al 2003) New primers for EPIC amplification of intron sequences for fish and other vertebrate population genetic studies. BioTechniques, 35, 676 682.
3. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
4. Awadalla P, Ritland K (1997) Microsatellite variation and evolution in the Mimulus guttatus species complex with contrasting mating systems. Molecular Biology and Evolution, 14 (10 1023 1034.
5. Baric S, Sturmbauer C (1999) Ecological parallelism and cryptic species in the genus Ophiothrix derived from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 11 (1 157 162.
6. Baus E, Darrock DJ, Bruford MW (2005) Gene-flow patterns in Atlantic and Mediterranean populations of the Lusitanian sea star Asterina gibbosa. Molecular Ecology, 14, 3373 3382.
7. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2004) genetix 4.05, Logiciel sous Windows pour la Génétique des Populations. Laboratoire Génome, Populations, Interactions: CNRS UMR 5000, Université de Montpellier II, Montpellier, France.
8. Bickford D, Lohman DJ, Sodhi NS, Ng PKL, Meier R, Winker K, Ingram KK, Das I (2007) Cryptic species as a window on diversity and conservation. Trends in Ecology and Evolution, 22 (3 148 155.
9. Binaux R, Bocquet C (1971) Sur le polychromatisme de l'ophiure Amphipholis squamata (Delle Chiaje). Comptes Rendus Académie Des Sciences Paris, 273, 1618 1619.
10. Byrne M, Hart MW, Cerra A, Cisternas P (2003) Reproduction and larval morphology of broadcasting and viviparous species in the Cryptasterina species complex. Biology Bulletin, 205 (3 285 294.
11. Chenuil A, Le Gac M, Thierry M (2003) Fast isolation of microsatellite loci of very diverse repeat motifs by library enrichment in echinoderm species Amphipholis squamata and Echinocardium cordatum (Technical note). Molecular Ecology Notes, 3, 324 327.
12. Cracraft J (1983) Species concepts and speciation analysis. Current Ornithology, 1, 159 187.
13. Deheyn D, Jangoux M (1999) Colour varieties as sibling species in the polychromatic ophiuroid Amphipholis squamata (Echinodermata): evidence from inheritance of body colour and luminescence characters. Journal of Experimental Marine Biology and Ecology, 234, 219 234.
14. Deheyn D, Mallefet J, Jangoux M (1997) Intraspecific variations of bioluminescence in a polychromatic populations of Amphipholis squamata (Echinodermata: Ophiuroidea). Journal of the Marine Biology Association of the United Kingdom, 77, 1213 1222.
15. Dorken ME, Eckert CG (2001) Severely reduced sexual reproduction in northern populations of a clonal plant, Decodon verticillatus (Lythraceae). Journal of Ecology, 89, 339 350.
16. Dupont S, Chaufer S, Poulin E, Féral JP, Mallefet J (2000) Is there a link between morphological, physiological and genetic variability of the ophiuroid Amphipholis squamata? The Netherland Journal of Zoology, 50, 355 363.
17. Dupont S, Mallefet J (1999) Population dynamics of Amphipholis squamata (Echinodermata: Ophiuroidea) in the Oliveri-Tindari's lagoon system, Sicily. In : Proceedings of the 5th European Conference on Echinoderms, Milano, Italy, 147-150. Echinoderm Research 1998 (eds Candia Carnaveli MD, Bonasoro F), A.A. Balkema edn. Rotterdam.
18. Fell HB (1946) The embryology of the viviparous ophiuroid Amphipholis squamata (Delle Chiajei). Transactions of the Royal Society of New Zealand, 75, 419 464.
19. Féral JP, Barré N, Villard A-M, Chenuil A (2003) What is the smallest distance of genetic structuring in the brooding ophiuroid Amphipholis squamata from the Western Mediterranean?. In : Echinoderm Research 2001: Proceedings of the 6th European Conference on Echinoderm Research, Banyuls-sur-mer, 3-7 September 2001 (eds Féral J-P, David B, Balkema AA), pp. 23 27. Rotterdam.
20. Gage JD, Pearson M, Clark AM, Paterson GLJ, Tyler PA (1983) Echinoderms of the Rockall trough and adjacent area. I. Crinoidea, Asteroidea and Ophiuroidea. Bulletin of the British Museum (Natural History) Zoology, 43, 263 308.
21. Gause GF (1934) The Struggle for Existence. Williams & Wilkins, Baltimore, Maryland.
22. Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate phylogenies by maximum likelihood. Systematic Biology, 52, 696 704.
23. Hasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22, 160 172.
24. Hassan M, Lemaire C, Fauvelot C, Bonhomme F (2002) Seventeen new exon-primed intron-crossing polymerase chain reaction amplifiable introns in fish. Molecular Ecology Notes, 2 (3 334 340.
25. Hendler G (1991) Echinodermata: Ophiuroidea. In : Reproduction of Marine Invertebrates: Echinoderms and Lophophorates (eds Giese AC, Pearse JS, Pearse VB p. 808. Boxwood Press, Pacific Grove, California.
26. Jarman SN, Ward RD, Elliott NG (2002) Oligonucleotide primers for PCR amplification of coelomate introns. Marine Biotechnology, 4 (4 347 355.
27. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111 120.
28. Knowlton N (1993) Sibling species in the sea. Annual Review of Ecology and Systematic, 24, 189 216.
29. Knowlton N (2000) Molecular genetic analyses of species boundaries in the sea. Hydrobiologia, 420, 73 90.
30. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) mega 2: molecular evolutionary genetics analysis. Version 2.1. Bioinformatics, 17, 1244 1245.
31. Le Gac M, Féral JP, Poulin E, Veyret M, Chenuil A (2004) Identification of allopatric clades in the cosmopolitan ophiuroid species complex Amphipholis squamata (Echinodermata). The end of a paradox? Marine Ecology Progress Series, 278, 171 178.
32. Mayr E (1963) Animal Species and Evolution. Harvard University Press, Cambridge, Massachusetts.
33. McCartney MA, Keller G, Lessios HA (2000) Dispersal barriers in tropical oceans and speciation in Atlantic and eastern Pacific sea urchins of the genus Echinometra. Molecular Ecology, 9 (9 1391 1400.
34. Metschnikoff E (1869) Stuedien Neber die Entwicklung der Echinodermen und Nemertinen. Mémoires de l'Academie Imperiale des Sciences de Saint-Petersbourg, 14, ??.
35. Muths D, Davoult D, Gentil F, Jollivet D (2006) Incomplete cryptic speciation between intertidal and subtidal morphs of Amphiura brachiata (Echinodermata: Ophiuroidea) in the North East Atlantic. Molecular Ecology, 15 (11 3303 3318.
36. Nakadate M, Vinas J, Corriero A, Clarke S, Suzuki N, Chow S (2005) Genetic isolation between Atlantic and Mediterranean albacore populations inferred from mitochondrial and nuclear DNA markers. Journal of Fish Biology, 66 (6 1545 1557.
37. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583 590.
38. Nylander JAA (2004) mraic.pl. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
39. Pannell JR, Barrett SCH (1998) Baker's law revisited: Reproductive assurance in a metapopulation. Evolution, 52 (3 657 668.
40. Peakall R, Smouse PE (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288 295.
41. Pfenninger M, Schwenk K (2007) Cryptic animal species are homogeneously distributed among taxa and biogeographical regions. BMC Evolutionary Biology, 7, 121.
42. Pielou EC (1969) An Introduction to Mathematical Ecology. Wiley-Interscience, New York.
43. Poulin E, Florensa M, Féral JP, Cornudella L, Alva V (1999) Selfing and outcrossing in the brood protecting ophiuroid Amphipholis squamata. In : Echinoderm Research 1998: Proceeding of the 5th European Conference on Echinoderms, Milano (eds Candia Carnaveli MD, Bonasoro F), A.A. Balkema edn, pp. 147 150. Rotterdam, Italy.
44. Quatrefages A (1842) La petite ophiure est vivipare. Compte Rendu Hebdomadaire Des Séances de l'Académie Des Sciences, 15, 798 800.
45. Schneider S, Roessli D, Excoffier L (2000) arlequin, Version 2.000: A Software for Population Genetics Data Analyses. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
46. Schwarz G (1978) Estimating the dimension of a model. Annals of Statistics, 6, 461 464.
47. Shaw KL (2000) Further acoustic diversity in Hawaiian forests: two new species of Hawaiian cricket (Orthoptera: Gryllidae: Trigonidiinae: Laupala). Zoological Journal of the Linnean Society, 129, 73 91.
48. Sponer R (2002) Phylogeography and evolutionary history of the cosmopolitan, brooding brittle star, Amphipholis squamata (Delle Chiaje, 1828. Echinodermata: Ophiuroidea). PhD Thesis, University of Otago, Dunedin, New Zealand.
49. Sponer R, Deheyn D, Roy M (2001) Large genetic distances within a population of Amphipholis squamata (Echinodermata: Ophiuroidea) do not support colour varieties as sibling species. Marine Ecology Progress Series, 216, 169 175.
50. Sponer R, Roy M (1999) Molecular evolution of Amphipholis squamata (Echinodermata: Ophiuroidea): high genetic differences among populations. In : Echinoderm Research 1998: Proceedings of the 5th European Conference on Echinoderms, Milan, Italy, 7-12 September (eds Candia-Carnevali MD, Bonasoro F), pp. 405 408. Balkema, Rotterdam.
51. Sponer R, Roy M (2002) Phylogeographic analysis of the brooding brittle star Amphipholis squamata (Echinodermata) along the coast of New Zealand reveals high cryptic genetic variation and cryptic dispersal potential. Evolution, 56, 1954 1967.
52. Stockman AK, Bond JE (2007) Delimiting cohesion species: extreme population structuring and the role of ecological interchangeability. Molecular Ecology, 16, 3374 3392.
53. Viard F, Bremond P, Labbo R, Justy F, Delay B, Jarne P (1996) Microsatellites and the genetics of highly selfing populations in the freshwater snail Bulinus truncatus. Genetics, 142 (4 1237 1247.
54. Walsh PS, Metzger DA, Higushi R (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques, 10, 506 513.
55. Waters JM, O'Loughlin PM, Roy MS (2004) Cladogenesis in a starfish species complex from southern Australia: evidence for vicariant speciation? Molecular Phylogenetics and Evolution, 32 (1 236 245.