Temporal genetic variability in the Mediterranean common sea urchin Paracentrotus lividus

Marine Ecology Progress Series

Volumn 408, Issue , 2010, Pages 149-159

  Calderón, Isabel ^a   Turon, Xavier ^b  

^a UNIVERSITY OF BARCELONA   (Spain)

^b CENTRE D ESTUDIS AVANÇATS DE BLANES CEAB CSIC   (Spain)

Author keywords

Bindin; Cohorts; COI; Paracentrotus lividus; Sea urchins; Temporal genetic structure

Indexed keywords

COMMERCIAL SPECIES; DISPERSAL; ECHINODERM; ENVIRONMENTAL FACTOR; FERTILIZATION (REPRODUCTION); GAMETE; GENE EXPRESSION; GENETIC VARIATION; MITOCHONDRIAL DNA; PROTEIN; REPRODUCTIVE SUCCESS; SUBSTRATE;

ALGAE; ECHINOIDEA; INVERTEBRATA; PARACENTROTUS; PARACENTROTUS LIVIDUS;

EID: 77954130543     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps08576     Document Type: Article

References (66)

1. Arndt A, Márquez C, Lambert P, Smith MJ (1996) Molecular phylogeny of eastern Pacific sea cucumbers (Echinodermata: Holothuroidea) based on mitochondrial DNA sequence. Mol Phyl Evol 6:425-437
2. Avise JC (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge, MA
3. Avise JC, Shapiro DY (1986) Evaluating kinship of newly settled juveniles within social groups of the coral reef fish Anthias squamipinnis. Evolution 40:1051-1059
4. Avise JC, Arnold J, Ball MR, Bermingham E and others (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu Rev Ecol Syst 18:489-522
5. Banks SC, Piggot MP, Williamson JE, Bové U, Holbrook NJ, Beheregaray LB (2007) Oceanic variability and coastal topography shape genetic structure in a long-dispersing sea urchin. Ecology 88:3055-3064
6. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2004) GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier
7. Benjamini Y, Yekutieli D (2001) The control of false discovery rate under dependency. Ann Stat 29:1165-1188
8. Boudouresque CF, Verlaque M (2001) Ecology of Paracentrotus lividus. In: Lawrence JM (eds) Edible sea urchins: biology and ecology. Elsevier, Tampa, FL, p 177-216
9. Calderón I, Giribet G, Turon X (2008) Two markers and one history: phylogeography of the edible common sea urchin Paracentrotus lividus in the Lusitanian region. Mar. Biol 154:137-151
10. Calderón I, Turon X, Lessios HA (2009a) Characterization of the sperm molecule bindin in the sea urchin genus Paracentrotus. J Mol Evol 68:366-376
11. Calderón I, Palacín C, Turon X (2009b) Microsatellite markers reveal shallow genetic differentiation between cohorts of the common sea urchin Paracentrotus lividus (Lamarck) in NW Mediterranean. Mol Ecol 18:3036-3049
12. Calderón I, Ventura CRR, Turon X, Lessios HA (2010) Genetic divergence and assortative mating between colour morphs of the sea urchin Paracentrotus gaimardi. Mol Ecol 19:484-493
13. Cameron RA, Schroeter SC (1980) Sea urchin recruitment: effect of substrate selection on juvenile distribution. Mar. Ecol Prog Ser 2:243-247
14. Crapp GB, Willis ME (1975) Age determination in the sea urchin Paracentrotus lividus with notes on the reproductive cycle. J Exp Mar. Biol Ecol 20:157-178
15. Debenham P, Brzezinski M, Foltz K, Gaines S (2000) Genetic structure of populations of the red sea urchin, Strongylocentrotus franciscanus. J Exp Mar. Biol Ecol 253:49-62
16. Duran S, Palacín C, Becerro MA, Turon X, Giribet G (2004) Genetic diversity and population structure of the commercially harvested sea urchin Paracentrotus lividus (Echinodermata, Echinoidea). Mol Ecol 13:3317-3328
17. Ebert TA (1983) Recruitment in echinoderms. Echinoderm Stud 1:169-203
18. Edmands S, Moberg PE, Burton RS (1996) Allozyme and mitochondrial DNA evidence of population subdivision in the purple sea urchin Strongylocentrotus purpuratus. Mar. Biol 126:443-450
19. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
20. Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50
21. Flowers JM, Schroeter SC, Burton RS (2002) The recruitment sweepstake has many winners: genetic evidence from the sea urchin Strongylocentrotus purpuratus. Evolution 56:1445-1453
22. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
23. Harrigan RJ, Mazza ME, Sorenson MD (2008) Computation vs. cloning: evaluation of two methods for haplotype determination. Mol Ecol Resour 8:1239-1248
24. Harrold C, Lisin S, Light KH, Tudor S (1991) Isolating settlement from recruitment of sea urchins. J Exp Mar. Biol Ecol 147:81-94
25. Hedgecock D (1994) Does variance in reproductive success limit effective population size of marine organisms? In: Beaumont A (eds) Genetics and evolution of aquatic organisms. Chapman & Hall, London, p 122-134
26. Hedgecock D, Launey S, Pudovkin AI, Naciri Y, Lapègue S, Bonhomme F (2007) Small effective number of parents (Nb) inferred for a naturally spawned cohort of juvenile European flat oysters Ostrea edulis. Mar. Biol 150:1173-1182
27. Hellberg ME, Burton RS, Neigel JE, Palumbi SR (2002) Genetic assessment of connectivity among marine populations. Bull Mar. Sci 70:273-290
28. Hereu B, Zabala M, Linares C, Sala E (2004) Temporal and spatial variability in settlement of the sea urchin Paracentrotus lividus in the NW Mediterranean. Mar. Biol 144:1011-1018
29. Johnson MS, Black R (1982) Chaotic patchiness in an intertidal limpet, Siphonaria sp. Mar. Biol 70:157-164
30. Johnson MS, Holborn K, Black R (1993) Fine-scale patchiness and genetic heterogeneity of recruits of the corallivorous gastropod Drupella cornus. Mar. Biol 117:91-96
31. Koehn RK, Newell RIE, Immerman FW (1980) Maintenance of an aminopeptidase allele frequency cline by natural selection. Proc Natl Acad Sci USA 77:5385-5389
32. Kordos LR, Burton RS (1993) Genetic differentiation of Texas Gulf coast populations of the blue crab Callinectes sapidus. Mar. Biol 117:227-233
33. Lee YH, Ota T, Vacquier VD (1995) Positive selection is a general phenomenon in the evolution of abalone sperm lysine. Mol Biol Evol 12:231-238
34. Lennarz WJ (1994) Fertilisation in sea urchins: how many different molecules are involved in gamete interaction and fusion? Zygote 2:1-4
35. Levitan DR (2008) Gamete traits influence the variance in reproductive success, the intensity of sexual selection, and the outcome of sexual conflict among congeneric sea urchins. Evolution 62:1305-1316
36. Levitan DR, Ferrell DL (2006) Selection on gamete recognition proteins depends on sex, density and genotype frequency. Science 312:267-269
37. Li G, Hedgecock D (1998) Genetic heterogeneity, detected by PCR-SSCP, among samples of larval Pacific oysters (Crassostrea gigas) supports the hypothesis of large variance in reproductive success. Can J Fish Aquat Sci 55:1025-1033
38. López S, Turon X, Montero E, Palacín C, Duarte CM, Tarjuelo I (1998) Larval abundance, recruitment and early mortality in Paracentrotus lividus (Echinoidea). Interannual variability and plankton-benthos coupling. Mar. Ecol Prog Ser 172:239-251
39. Martin DP, Williamson C, Posada D (2005) RDP2: Recombination detection and analysis from sequence alignments. Bioinformatics 21:260-262
40. Metz EC, Palumbi SR (1996) Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin. Mol Biol Evol 13:397-406
41. Moberg PE, Burton RS (2000) Genetic heterogeneity among adult and recruit red sea urchins, Strongylocentrotus franciscanus. Mar. Biol 136:773-784
42. Narum SR (2006) Beyond Bonferroni: less conservative analyses for conservation genetics. Conserv Genet 7:783-787
43. Palacin C, Giribet G, Carner S, Dantart L, Turon X (1998) Low densities of sea urchins influence the structure of algal assemblages in the western Mediterranean. J Sea Res 39:281-290
44. Palumbi SR (1992) Marine speciation on a small planet. Trends Ecol Evol 7:114-118
45. Palumbi SR (1999) All males are not created equal: fertility differences depend on gamete recognition polymorphisms in sea urchins. Proc Natl Acad Sci USA 96:12632-12637
46. Palumbi SR, Wilson AC (1990) Mitochondrial DNA diversity in the sea urchins Strongylocentrotus purpuratus and S. droebachiensis. Evolution 44:403-415
47. Pedrotti ML (1993) Spatial and temporal distribution and recruitment of echinoderm larvae in the Ligurian Sea. J Mar. Biol Assoc UK 73:513-530
48. Planes S, Lenfant P (2002) Temporal change in the genetic structure between and within cohorts of a marine fish, Diplodus sargus, induced by a large variance in individual reproductive success. Mol Ecol 11:1515-1524
49. Pujolar JM, Maes GE, Volckaert FAM (2006) Genetic patchiness among recruits in the European eel Anguilla anguilla. Mar. Ecol Prog Ser 307:209-217
50. Ruzzante DE, Taggart CT, Cook D (1996) Spatial and temporal variation in the genetic composition of a larval cod (Gadus morhua) aggregation: cohort contribution and genetic stability. Can J Fish Aquat Sci 53:2695-2705 (Pubitemid 27335950)
51. Sala E, Ribes M, Hereu B, Zabala M, Alvà V, Coma R, Garrabou J (1998) Temporal variability in abundance of the sea urchins Paracentrotus lividus and Arbacia lixula in the North-Western Mediterranean: comparison between a marine reserve and an unprotected area. Mar. Ecol Prog Ser 168:135-145
52. Stephens M, Scheet P (2005) Accounting for the decay of linkage disequilibrium in haplotype inference and missing data imputation. Am J Hum Genet 76:449-462
53. Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989
54. Tomas F, Romero J, Turon X (2004) Settlement and recruitment of the sea urchin Paracentrotus lividus in two contrasting habitats in the Mediterranean. Mar. Ecol Prog Ser 282:173-184
55. Turon X, Giribet G, López S, Palacín C (1995) Growth and population structure of Paracentrotus lividus (Echinodermata: Echinoidea) in two contrasting habitats. Mar. Ecol Prog Ser 122:193-204 (Pubitemid 26449875)
56. Uthicke S, Schaffelke B, Byrne M (2009) A boom-bust phylum? Ecological and evolutionary consequences of density variations in echinoderms. Ecol Monogr 79:3-24
57. Vacquier VD (1998) Evolution of gamete recognition proteins. Science 281:1995-1998
58. Verling E, Barnes DKA, Crook AC (2005) Smashing tests? Patterns and mechanisms of adult mortality in a declining echinoid population. Mar. Biol 147:509-515
59. Villablanca FX, Roderick GK, Palumbi SR (1998) Invasion genetics of the Mediterranean fruit fly: variation in multiple nuclear introns. Mol Ecol 7:547-560
60. Waples RS (1998) Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. Amer Gen Assoc 89:438-450
61. Watts RJ, Johnson MS, Black R (1990) Effects of recruitment on genetic patchiness in the sea urchin Echinometra mathaei in Western Australia. Mar. Biol 105:145-151
62. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
63. Yang Z (2007) PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 24:1586-1591
64. Zigler KS (2008) The evolution of sea urchin sperm bindin. Int J Dev Biol 52:791-796
65. Zigler KS, Lessios HA (2003) 250 million years of bindin evolution. Biol Bull 205:8-15
66. Zigler KS, McCartney MA, Levitan DR, Lessios HA (2005) Sea urchin bindin divergence predicts gamete compatibility. Evolution 59:2399-2404