-
1
-
-
77149145892
-
Corrigendum: widespread distribution of proteorhodopsins in freshwater and brackish ecosystems
-
Atamna-Ismaeel, N., Sabehi, G., Sharon, I., Witzel, K., Labrenz, M., Jürgens, K., etal. (2010) Corrigendum: widespread distribution of proteorhodopsins in freshwater and brackish ecosystems. ISME J 4: 462.
-
(2010)
ISME J
, vol.4
, pp. 462
-
-
Atamna-Ismaeel, N.1
Sabehi, G.2
Sharon, I.3
Witzel, K.4
Labrenz, M.5
Jürgens, K.6
-
2
-
-
25444463058
-
Xanthorhodopsin: a proton pump with a light-harvesting carotenoid antenna
-
Balashov, S.P., Imasheva, E.S., Boichenko, V.A., Anton, J., Wang, J.M., and Lanyi, J.K. (2005) Xanthorhodopsin: a proton pump with a light-harvesting carotenoid antenna. Science 309: 2061-2064.
-
(2005)
Science
, vol.309
, pp. 2061-2064
-
-
Balashov, S.P.1
Imasheva, E.S.2
Boichenko, V.A.3
Anton, J.4
Wang, J.M.5
Lanyi, J.K.6
-
3
-
-
0034665853
-
Bacterial rhodopsin: evidence for a new type of phototrophy in the sea
-
Béjà, O., Aravind, L., Koonin, E.V., Suzuki, M.T., Hadd, A., Nguyen, L.P., etal. (2000) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289: 1902-1906.
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Béjà, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
-
4
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Béjà, O., Spudich, E.N., Spudich, J.L., Leclerc, M., and DeLong, E.F. (2001) Proteorhodopsin phototrophy in the ocean. Nature 411: 786-789.
-
(2001)
Nature
, vol.411
, pp. 786-789
-
-
Béjà, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
DeLong, E.F.5
-
5
-
-
77954834592
-
Average genome size: a potential source of bias in comparative metagenomics
-
Beszteri, B., Temperton, B., Frickenhaus, S., and Giovannoni, S.J. (2010) Average genome size: a potential source of bias in comparative metagenomics. ISME J 4: 1075-1077.
-
(2010)
ISME J
, vol.4
, pp. 1075-1077
-
-
Beszteri, B.1
Temperton, B.2
Frickenhaus, S.3
Giovannoni, S.J.4
-
6
-
-
0025919296
-
Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing
-
Britschgi, T.B., and Giovannoni, S.J. (1991) Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing. Appl Environ Microbiol 57: 1707-1713.
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 1707-1713
-
-
Britschgi, T.B.1
Giovannoni, S.J.2
-
7
-
-
38149122101
-
Abundant proteorhodopsin genes in the North Atlantic Ocean
-
Campbell, B.J., Waidner, L.A., Cottrell, M.T., and Kirchman, D.L. (2008) Abundant proteorhodopsin genes in the North Atlantic Ocean. Environ Microbiol 10: 99-109.
-
(2008)
Environ Microbiol
, vol.10
, pp. 99-109
-
-
Campbell, B.J.1
Waidner, L.A.2
Cottrell, M.T.3
Kirchman, D.L.4
-
8
-
-
84864618245
-
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
-
Chang, J.M., Di Tommaso, P., Taly, J.F., and Notredame, C. (2012) Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee. BMC Bioinformatics 13 (Suppl. 4): S1.
-
(2012)
BMC Bioinformatics
, vol.13
, Issue.SUPPL. 4
-
-
Chang, J.M.1
Di Tommaso, P.2
Taly, J.F.3
Notredame, C.4
-
9
-
-
84867741658
-
Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis
-
Danhorn, T., Young, C.R., and Delong, E.F. (2012) Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis. ISME J 6: 2056-2066.
-
(2012)
ISME J
, vol.6
, pp. 2056-2066
-
-
Danhorn, T.1
Young, C.R.2
Delong, E.F.3
-
10
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong, E.F. (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89: 5685-5689.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
DeLong, E.F.1
-
11
-
-
77951701764
-
The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times
-
DeLong, E.F., and Béjà, O. (2011) The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times. PLoS Biol 8: e1000359.
-
(2011)
PLoS Biol
, vol.8
-
-
DeLong, E.F.1
Béjà, O.2
-
12
-
-
0028594902
-
High abundance of Archaea in Antarctic marine picoplankton
-
DeLong, E.F., Wu, K.Y., Prezelin, B.B., and Jovine, R.V. (1994) High abundance of Archaea in Antarctic marine picoplankton. Nature 371: 695-697.
-
(1994)
Nature
, vol.371
, pp. 695-697
-
-
DeLong, E.F.1
Wu, K.Y.2
Prezelin, B.B.3
Jovine, R.V.4
-
13
-
-
84861342496
-
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
-
Dupont, C.L., Rusch, D.B., Yooseph, S., Lombardo, M.J., Richter, R.A., Valas, R., etal. (2012) Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. ISME J 6: 1186-1199.
-
(2012)
ISME J
, vol.6
, pp. 1186-1199
-
-
Dupont, C.L.1
Rusch, D.B.2
Yooseph, S.3
Lombardo, M.J.4
Richter, R.A.5
Valas, R.6
-
14
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R.C. (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
15
-
-
70349448573
-
Bias in assessments of marine SAR11 biodiversity in environmental fosmid and BAC libraries?
-
Feingersch, R., and Béjà, O. (2009) Bias in assessments of marine SAR11 biodiversity in environmental fosmid and BAC libraries? ISME J 3: 1117-1119.
-
(2009)
ISME J
, vol.3
, pp. 1117-1119
-
-
Feingersch, R.1
Béjà, O.2
-
16
-
-
84872931134
-
Global abundance of microbial rhodopsins
-
Finkel, O.M., Béjà, O., and Belkin, S. (2012) Global abundance of microbial rhodopsins. ISME J 7: 448-451.
-
(2012)
ISME J
, vol.7
, pp. 448-451
-
-
Finkel, O.M.1
Béjà, O.2
Belkin, S.3
-
17
-
-
41649114407
-
Microbial community gene expression in ocean surface waters
-
Frias-Lopez, J., Shi, Y., Tyson, G.W., Coleman, M.L., Schuster, S.C., Chisholm, S.W., and Delong, E.F. (2008) Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci USA 105: 3805-3810.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 3805-3810
-
-
Frias-Lopez, J.1
Shi, Y.2
Tyson, G.W.3
Coleman, M.L.4
Schuster, S.C.5
Chisholm, S.W.6
Delong, E.F.7
-
18
-
-
32844465575
-
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
-
Frigaard, N.-U., Martinez, A., Mincer, T.J., and DeLong, E.F. (2006) Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature 439: 847-850.
-
(2006)
Nature
, vol.439
, pp. 847-850
-
-
Frigaard, N.-U.1
Martinez, A.2
Mincer, T.J.3
DeLong, E.F.4
-
19
-
-
43849084187
-
Proteorhodopsins: an array of physiological roles?
-
Fuhrman, J.A., Schwalbach, M.S., and Stingl, U. (2008) Proteorhodopsins: an array of physiological roles? Nat Rev Microbiol 6: 488-494.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 488-494
-
-
Fuhrman, J.A.1
Schwalbach, M.S.2
Stingl, U.3
-
20
-
-
84872981638
-
Expression patterns reveal niche diversification in a marine microbial assemblage
-
Gifford, S.M., Sharma, S., Booth, M., and Moran, M.A. (2012) Expression patterns reveal niche diversification in a marine microbial assemblage. ISME J 7: 281-298.
-
(2012)
ISME J
, vol.7
, pp. 281-298
-
-
Gifford, S.M.1
Sharma, S.2
Booth, M.3
Moran, M.A.4
-
21
-
-
27744438187
-
Proteorhodopsin in the ubiquitous marine bacterium SAR11
-
Giovannoni, S.J., Bibbs, L., Cho, J.-C., Stapels, M.D., Desiderio, R., Vergin, K.L., etal. (2005) Proteorhodopsin in the ubiquitous marine bacterium SAR11. Nature 438: 82-85.
-
(2005)
Nature
, vol.438
, pp. 82-85
-
-
Giovannoni, S.J.1
Bibbs, L.2
Cho, J.-C.3
Stapels, M.D.4
Desiderio, R.5
Vergin, K.L.6
-
22
-
-
84868369211
-
Streamlining and core genome conservation among highly divergent members of the SAR11 clade
-
Grote, J., Thrash, J.C., Huggett, M.J., Landry, Z.C., Carini, P., Giovannoni, S.J., and Rappé, M.S. (2012) Streamlining and core genome conservation among highly divergent members of the SAR11 clade. mBio 3: e00252-e00212.
-
(2012)
mBio
, vol.3
-
-
Grote, J.1
Thrash, J.C.2
Huggett, M.J.3
Landry, Z.C.4
Carini, P.5
Giovannoni, S.J.6
Rappé, M.S.7
-
23
-
-
84856659328
-
Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota
-
Iverson, V., Morris, R.M., Frazar, C.D., Berthiaume, C.T., Morales, R.L., and Armbrust, E.V. (2012) Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota. Science 335: 587-590.
-
(2012)
Science
, vol.335
, pp. 587-590
-
-
Iverson, V.1
Morris, R.M.2
Frazar, C.D.3
Berthiaume, C.T.4
Morales, R.L.5
Armbrust, E.V.6
-
24
-
-
0028982376
-
Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea
-
Lindell, D., and Post, A.F. (1995) Ultraphytoplankton succession is triggered by deep winter mixing in the Gulf of Aqaba (Eilat), Red Sea. Limnol Oceanogr 40: 1130-1141.
-
(1995)
Limnol Oceanogr
, vol.40
, pp. 1130-1141
-
-
Lindell, D.1
Post, A.F.2
-
25
-
-
34547525057
-
Chemical cues induce consumer-specific defenses in a bloom-forming marine phytoplankton
-
Long, J.D., Smalley, G.W., Barsby, T., Anderson, J.T., and Hay, M.E. (2007) Chemical cues induce consumer-specific defenses in a bloom-forming marine phytoplankton. Proc Natl Acad Sci USA 104: 10512-10517.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 10512-10517
-
-
Long, J.D.1
Smalley, G.W.2
Barsby, T.3
Anderson, J.T.4
Hay, M.E.5
-
26
-
-
33947101507
-
Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla
-
McCarren, J., and DeLong, E.F. (2007) Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla. Environ Microbiol 9: 846-858.
-
(2007)
Environ Microbiol
, vol.9
, pp. 846-858
-
-
McCarren, J.1
DeLong, E.F.2
-
27
-
-
34250802540
-
Phosphorus availability, phytoplankton community dynamics, and taxon-specific phosphorus status in the Gulf of Aqaba, Red Sea
-
Mackey, K.R.M., Labiosa, R.G., Calhoun, M., Street, J., Post, A.F., and Paytan, A. (2007) Phosphorus availability, phytoplankton community dynamics, and taxon-specific phosphorus status in the Gulf of Aqaba, Red Sea. Limnol Oceanogr 52: 873-885.
-
(2007)
Limnol Oceanogr
, vol.52
, pp. 873-885
-
-
Mackey, K.R.M.1
Labiosa, R.G.2
Calhoun, M.3
Street, J.4
Post, A.F.5
Paytan, A.6
-
28
-
-
63249121217
-
Application of 'next-generation' sequencing technologies to microbial genetics
-
MacLean, D., Jones, J.D.G., and Studholme, D.J. (2009) Application of 'next-generation' sequencing technologies to microbial genetics. Nat Rev Microbiol 7: 287-296.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 287-296
-
-
MacLean, D.1
Jones, J.D.G.2
Studholme, D.J.3
-
29
-
-
0038391981
-
Diversification and spectral tuning in marine proteorhodopsins
-
Man, D., Wang, W., Sabehi, G., Aravind, L., Post, A.F., Massana, R., etal. (2003) Diversification and spectral tuning in marine proteorhodopsins. EMBO J 22: 1725-1731.
-
(2003)
EMBO J
, vol.22
, pp. 1725-1731
-
-
Man, D.1
Wang, W.2
Sabehi, G.3
Aravind, L.4
Post, A.F.5
Massana, R.6
-
30
-
-
84857134530
-
Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability
-
Marchetti, A., Schruth, D.M., Durkin, C.A., Parker, M.S., Kodner, R.B., Berthiaume, C.T., etal. (2012) Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability. Proc Natl Acad Sci USA 109: E317-E325.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Marchetti, A.1
Schruth, D.M.2
Durkin, C.A.3
Parker, M.S.4
Kodner, R.B.5
Berthiaume, C.T.6
-
31
-
-
84876788457
-
Proteorhodopsin
-
Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.9780410022837
-
Miyake, S., and Stingl, U. (2011) Proteorhodopsin. In Encyclopedia of Life Sciences (ELS). Chichester, UK: John Wiley & Sons. doi: 10.1002/9780470015902.9780410022837
-
(2011)
Encyclopedia of Life Sciences (ELS)
-
-
Miyake, S.1
Stingl, U.2
-
32
-
-
29144485325
-
The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea
-
Mongodin, E.F., Nelson, K.E., Daugherty, S., Deboy, R.T., Wister, J., Khouri, H., etal. (2005) The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. Proc Natl Acad Sci USA 102: 18147-18152.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 18147-18152
-
-
Mongodin, E.F.1
Nelson, K.E.2
Daugherty, S.3
Deboy, R.T.4
Wister, J.5
Khouri, H.6
-
33
-
-
0037180794
-
SAR11 clade dominates ocean surface bacterioplankton communities
-
Morris, R.M., Rappé, M.S., Connon, S.A., Vergin, K.L., Siebold, W.A., Carlson, C.A., and Giovannoni, S.J. (2002) SAR11 clade dominates ocean surface bacterioplankton communities. Nature 420: 806-810.
-
(2002)
Nature
, vol.420
, pp. 806-810
-
-
Morris, R.M.1
Rappé, M.S.2
Connon, S.A.3
Vergin, K.L.4
Siebold, W.A.5
Carlson, C.A.6
Giovannoni, S.J.7
-
34
-
-
77951497989
-
Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction
-
Morris, R.M., Nunn, B.L., Frazar, C., Goodlett, D.R., Ting, Y.S., and Rocap, G. (2010) Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. ISME J 4: 673-685.
-
(2010)
ISME J
, vol.4
, pp. 673-685
-
-
Morris, R.M.1
Nunn, B.L.2
Frazar, C.3
Goodlett, D.R.4
Ting, Y.S.5
Rocap, G.6
-
35
-
-
66649089244
-
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
-
Poretsky, R.S., Hewson, I., Sun, S., Allen, A.E., Zehr, J.P., and Moran, M.A. (2009) Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ Microbiol 11: 1358-1375.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1358-1375
-
-
Poretsky, R.S.1
Hewson, I.2
Sun, S.3
Allen, A.E.4
Zehr, J.P.5
Moran, M.A.6
-
36
-
-
67649327176
-
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
-
Price, M.N., Dehal, P.S., and Arkin, A.P. (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26: 1641-1650.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1641-1650
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
37
-
-
77949718257
-
FastTree 2 - approximately maximum-likelihood trees for large alignments
-
Price, M.N., Dehal, P.S., and Arkin, A.P. (2010) FastTree 2 - approximately maximum-likelihood trees for large alignments. PLoS ONE 5: e9490.
-
(2010)
PLoS ONE
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
38
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glockner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glockner, F.O.7
-
39
-
-
33847280283
-
Prediction of effective genome size in metagenomic samples
-
Raes, J., Korbel, J.O., Lercher, M.J., von Mering, C., and Bork, P. (2007) Prediction of effective genome size in metagenomic samples. Genome Biol 8: R10.
-
(2007)
Genome Biol
, vol.8
-
-
Raes, J.1
Korbel, J.O.2
von Lercher, M.J.3
Mering, C.4
Bork, P.5
-
40
-
-
85010244168
-
The Sorcerer II Global Ocean Sampling expedition: I, The northwest Atlantic through the eastern tropical Pacific
-
Rusch, D.B., Halpern, A.L., Heidelberg, K.B., Sutton, G., Williamson, S.J., Yooseph, S., etal. (2007) The Sorcerer II Global Ocean Sampling expedition: I, The northwest Atlantic through the eastern tropical Pacific. PLoS Biol 5: e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Heidelberg, K.B.3
Sutton, G.4
Williamson, S.J.5
Yooseph, S.6
-
41
-
-
0141676335
-
Novel proteorhodopsin variants from the Mediterranean and Red Seas
-
Sabehi, G., Massana, R., Bielawski, J.P., Rosenberg, M., DeLong, E.F., and Béjà, O. (2003) Novel proteorhodopsin variants from the Mediterranean and Red Seas. Environ Microbiol 5: 842-849.
-
(2003)
Environ Microbiol
, vol.5
, pp. 842-849
-
-
Sabehi, G.1
Massana, R.2
Bielawski, J.P.3
Rosenberg, M.4
DeLong, E.F.5
Béjà, O.6
-
42
-
-
4344584482
-
Different SAR86 subgroups harbour divergent proteorhodopsins
-
Sabehi, G., Béjà, O., Suzuki, M.T., Preston, C.M., and DeLong, E.F. (2004) Different SAR86 subgroups harbour divergent proteorhodopsins. Environ Microbiol 6: 903-910.
-
(2004)
Environ Microbiol
, vol.6
, pp. 903-910
-
-
Sabehi, G.1
Béjà, O.2
Suzuki, M.T.3
Preston, C.M.4
DeLong, E.F.5
-
43
-
-
23944505538
-
New insights into metabolic properties of marine bacteria encoding proteorhodopsins
-
Sabehi, G., Loy, A., Jung, K.H., Partha, R., Spudich, J.L., Isaacson, T., etal. (2005) New insights into metabolic properties of marine bacteria encoding proteorhodopsins. PLoS Biol 3: e173.
-
(2005)
PLoS Biol
, vol.3
-
-
Sabehi, G.1
Loy, A.2
Jung, K.H.3
Partha, R.4
Spudich, J.L.5
Isaacson, T.6
-
44
-
-
34248191374
-
Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas
-
Sabehi, G., Kirkup, B.C., Rosenberg, M., Stambler, N., Polz, M.F., and Béjà, O. (2007) Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas. ISME J 1: 48-55.
-
(2007)
ISME J
, vol.1
, pp. 48-55
-
-
Sabehi, G.1
Kirkup, B.C.2
Rosenberg, M.3
Stambler, N.4
Polz, M.F.5
Béjà, O.6
-
45
-
-
0025860931
-
Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
-
Schmidt, T.M., DeLong, E.F., and Pace, N.R. (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol 173: 4371-4378.
-
(1991)
J Bacteriol
, vol.173
, pp. 4371-4378
-
-
Schmidt, T.M.1
DeLong, E.F.2
Pace, N.R.3
-
46
-
-
67549134809
-
Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria
-
Sharma, A.K., Sommerfeld, K., Bullerjahn, G.S., Matteson, A.R., Wilhelm, S.W., Jezbera, J., etal. (2009) Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria. ISME J 3: 726-737.
-
(2009)
ISME J
, vol.3
, pp. 726-737
-
-
Sharma, A.K.1
Sommerfeld, K.2
Bullerjahn, G.S.3
Matteson, A.R.4
Wilhelm, S.W.5
Jezbera, J.6
-
47
-
-
79956287318
-
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
-
Shi, Y., Tyson, G.W., Eppley, J.M., and Delong, E.F. (2010) Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. ISME J 5: 999-1013.
-
(2010)
ISME J
, vol.5
, pp. 999-1013
-
-
Shi, Y.1
Tyson, G.W.2
Eppley, J.M.3
Delong, E.F.4
-
48
-
-
84880317067
-
A bacterial proteorhodopsin proton pump in marine eukaryotes
-
Slamovits, C.H., Okamoto, N., Burri, L., James, E.R., and Keeling, P.J. (2011) A bacterial proteorhodopsin proton pump in marine eukaryotes. Nat Commun 2: 183.
-
(2011)
Nat Commun
, vol.2
, pp. 183
-
-
Slamovits, C.H.1
Okamoto, N.2
Burri, L.3
James, E.R.4
Keeling, P.J.5
-
49
-
-
84889439782
-
Microbial rhodopsins: phylogenetic and functional diversity
-
Briggs, W.R., and Spudich, J.L. (eds). Weinheim, Germany: WILEY-VCH Verlag GmbH & Co. KGaA
-
Spudich, J.L., and Jung, K.H. (2005) Microbial rhodopsins: phylogenetic and functional diversity. In Handbook of Photosensory Receptors. Briggs, W.R., and Spudich, J.L. (eds). Weinheim, Germany: WILEY-VCH Verlag GmbH & Co. KGaA, pp. 1-24.
-
(2005)
Handbook of Photosensory Receptors
, pp. 1-24
-
-
Spudich, J.L.1
Jung, K.H.2
-
50
-
-
0034519206
-
Retinylidene proteins: structures and functions from archaea to humans
-
Spudich, J.L., Yang, C.S., Jung, K.H., and Spudich, E.N. (2000) Retinylidene proteins: structures and functions from archaea to humans. Annu Rev Cell Dev Biol 16: 365-392.
-
(2000)
Annu Rev Cell Dev Biol
, vol.16
, pp. 365-392
-
-
Spudich, J.L.1
Yang, C.S.2
Jung, K.H.3
Spudich, E.N.4
-
51
-
-
67949095970
-
Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing
-
Temperton, B., Field, D., Oliver, A., Tiwari, B., Mühling, M., Joint, I., and Gilbert, J.A. (2009) Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME J 3: 792-796.
-
(2009)
ISME J
, vol.3
, pp. 792-796
-
-
Temperton, B.1
Field, D.2
Oliver, A.3
Tiwari, B.4
Mühling, M.5
Joint, I.6
Gilbert, J.A.7
-
52
-
-
64749109065
-
Laboratory procedures to generate viral metagenomes
-
Thurber, R.V., Haynes, M., Breitbart, M., Wegley, L., and Rohwer, F. (2009) Laboratory procedures to generate viral metagenomes. Nat Protoc 4: 470-483.
-
(2009)
Nat Protoc
, vol.4
, pp. 470-483
-
-
Thurber, R.V.1
Haynes, M.2
Breitbart, M.3
Wegley, L.4
Rohwer, F.5
-
53
-
-
80053597562
-
Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria
-
Ugalde, J.A., Podell, S., Narasingarao, P., and Allen, E.E. (2011) Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria. Biol Direct 6: 52.
-
(2011)
Biol Direct
, vol.6
, pp. 52
-
-
Ugalde, J.A.1
Podell, S.2
Narasingarao, P.3
Allen, E.E.4
-
54
-
-
84859947413
-
Bacterial dimethylsulfoniopropionate degradation genes in the oligotrophic north pacific subtropical gyre
-
Varaljay, V.A., Gifford, S.M., Wilson, S.T., Sharma, S., Karl, D.M., and Moran, M.A. (2012) Bacterial dimethylsulfoniopropionate degradation genes in the oligotrophic north pacific subtropical gyre. Appl Environ Microbiol 78: 2775-2782.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 2775-2782
-
-
Varaljay, V.A.1
Gifford, S.M.2
Wilson, S.T.3
Sharma, S.4
Karl, D.M.5
Moran, M.A.6
-
55
-
-
84867157988
-
Environmental actinorhodopsin expression revealed by a new in situ filtration and fixation sampler
-
Wurzbacher, C., Salka, I., and Grossart, H.P. (2012) Environmental actinorhodopsin expression revealed by a new in situ filtration and fixation sampler. Environ Microbiol Rep 4: 491-497.
-
(2012)
Environ Microbiol Rep
, vol.4
, pp. 491-497
-
-
Wurzbacher, C.1
Salka, I.2
Grossart, H.P.3
-
56
-
-
79955006806
-
Virophage control of antarctic algal host-virus dynamics
-
Yau, S., Lauro, F.M., DeMaere, M.Z., Brown, M.V., Thomas, T., Raftery, M.J., etal. (2011) Virophage control of antarctic algal host-virus dynamics. Proc Natl Acad Sci USA 108: 6163-6168.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 6163-6168
-
-
Yau, S.1
Lauro, F.M.2
DeMaere, M.Z.3
Brown, M.V.4
Thomas, T.5
Raftery, M.J.6
-
57
-
-
84866914570
-
Proteorhodopsin genes in giant viruses
-
Yutin, N., and Koonin, E.V. (2012) Proteorhodopsin genes in giant viruses. Biol Direct 7: 34.
-
(2012)
Biol Direct
, vol.7
, pp. 34
-
-
Yutin, N.1
Koonin, E.V.2
|