메뉴 건너뛰기




Volumn 22, Issue 8, 2003, Pages 1725-1731

Diversification and spectral tuning in marine proteorhodopsins

Author keywords

Diversity; Rhodopsin; SAR86; Spectral tuning; Structure modeling

Indexed keywords

AMINO ACID; BACTERIAL PROTEIN; PIGMENT; PROTEORHODOPSIN; UNCLASSIFIED DRUG;

EID: 0038391981     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/cdg183     Document Type: Article
Times cited : (258)

References (35)
  • 1
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Béjà, O. et al. (2000a) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science, 289, 1902-1906.
    • (2000) Science , vol.289 , pp. 1902-1906
    • Béjà, O.1
  • 2
    • 0034554741 scopus 로고    scopus 로고
    • Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
    • Béjà, O. et al. (2000b) Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ. Microbiol., 2, 516-529.
    • (2000) Environ. Microbiol. , vol.2 , pp. 516-529
    • Béjà, O.1
  • 4
    • 0036135990 scopus 로고    scopus 로고
    • Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces
    • Béjà, O. et al. (2002) Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Appl. Environ. Microbiol., 68, 335-345.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 335-345
    • Béjà, O.1
  • 5
    • 0033607149 scopus 로고    scopus 로고
    • A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment
    • Bieszke, J.A., Spudich, E.N., Scott, K.L., Borkovich, K.A. and Spudich, J.L. (1999) A eukaryotic protein, NOP-1, binds retinal to form an archaeal rhodopsin-like photochemically reactive pigment. Biochemistry, 38, 14138-14145.
    • (1999) Biochemistry , vol.38 , pp. 14138-14145
    • Bieszke, J.A.1    Spudich, E.N.2    Scott, K.L.3    Borkovich, K.A.4    Spudich, J.L.5
  • 6
    • 0025303725 scopus 로고
    • Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin
    • Birge, R.R. (1990) Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin. Biochim. Biophys. Acta, 1016, 293-327.
    • (1990) Biochim. Biophys. Acta , vol.1016 , pp. 293-327
    • Birge, R.R.1
  • 8
    • 0033916615 scopus 로고    scopus 로고
    • Culturability and in situ abundance of pelagic bacteria from the North Sea
    • Eilers, H., Pernthaler, J., Glockner, F.O. and Amann, R. (2000) Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ. Microbiol., 66, 3044-3051.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3044-3051
    • Eilers, H.1    Pernthaler, J.2    Glockner, F.O.3    Amann, R.4
  • 9
    • 0023931049 scopus 로고
    • Biochemical analysis of spontaneous fepA mutants of Escherichia coli
    • Elish, M.E., Pierce, J.R. and Earhart, C.F. (1988) Biochemical analysis of spontaneous fepA mutants of Escherichia coli. J. Gen. Microbiol., 134, 1355-1364.
    • (1988) J. Gen. Microbiol. , vol.134 , pp. 1355-1364
    • Elish, M.E.1    Pierce, J.R.2    Earhart, C.F.3
  • 11
    • 0036427776 scopus 로고    scopus 로고
    • Community structure and function in prokaryotic marine plankton
    • Fuhrman, J.A. (2002) Community structure and function in prokaryotic marine plankton. Antonie van Leeuwenhoek, 81, 521-527.
    • (2002) Antonie van Leeuwenhoek , vol.81 , pp. 521-527
    • Fuhrman, J.A.1
  • 14
    • 0024520745 scopus 로고
    • Site-directed mutagenesis by overlap extension using the polymerase chain reaction
    • Ho, S.N., Hunt, H.D., Horton, R.M., Pullen, J.K. and Pease, L.R. (1989) Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene, 77, 51-59.
    • (1989) Gene , vol.77 , pp. 51-59
    • Ho, S.N.1    Hunt, H.D.2    Horton, R.M.3    Pullen, J.K.4    Pease, L.R.5
  • 15
    • 0035022795 scopus 로고    scopus 로고
    • Phylogenetic analysis of the succession of bacterial communities in the Great South Bay (Long Island)
    • Kelly, K.M. and Chistoserdov, A.Y. (2001) Phylogenetic analysis of the succession of bacterial communities in the Great South Bay (Long Island). FEMS Microbiol. Ecol., 35, 85-95.
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 85-95
    • Kelly, K.M.1    Chistoserdov, A.Y.2
  • 17
    • 0033256995 scopus 로고    scopus 로고
    • Colour tuning mechanisms of visual pigments
    • Lin, S.W. and Sakmar, T.P. (1999) Colour tuning mechanisms of visual pigments. Novartis Found. Symp., 224, 124-135.
    • (1999) Novartis Found. Symp. , vol.224 , pp. 124-135
    • Lin, S.W.1    Sakmar, T.P.2
  • 18
    • 0032544345 scopus 로고    scopus 로고
    • Mechanisms of spectral tuning in blue cone visual pigments. Visible and Raman spectroscopy of blue-shifted rhodopsin mutants
    • Lin, S.W., Kochendoerfer, G.G., Carroll, K.S., Wang, D., Mathies, R.A. and Sakmar, T.P. (1998) Mechanisms of spectral tuning in blue cone visual pigments. Visible and Raman spectroscopy of blue-shifted rhodopsin mutants. J. Biol. Chem., 273, 24583-24591.
    • (1998) J. Biol. Chem. , vol.273 , pp. 24583-24591
    • Lin, S.W.1    Kochendoerfer, G.G.2    Carroll, K.S.3    Wang, D.4    Mathies, R.A.5    Sakmar, T.P.6
  • 20
    • 0032482462 scopus 로고    scopus 로고
    • Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
    • Moore, L.R., Rocap, G. and Chisholm, S.W. (1998) Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature, 393, 464-467.
    • (1998) Nature , vol.393 , pp. 464-467
    • Moore, L.R.1    Rocap, G.2    Chisholm, S.W.3
  • 21
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T.D., Britcshgi, T.B., Krest, R.L. and Giovannoni, S.J. (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr., 40, 148-158.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britcshgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 22
    • 0033212978 scopus 로고    scopus 로고
    • The evolution and physiology of human color vision: Insights from molecular genetic studies of visual pigments
    • Nathans, J. (1999) The evolution and physiology of human color vision: insights from molecular genetic studies of visual pigments. Neuron, 24, 299-312.
    • (1999) Neuron , vol.24 , pp. 299-312
    • Nathans, J.1
  • 23
    • 0024835953 scopus 로고
    • Synthetic retinals as probes for the binding site and photoreactions in rhodopsins
    • Ottolenghi, M. and Sheves, M. (1989) Synthetic retinals as probes for the binding site and photoreactions in rhodopsins. J. Membr. Biol., 112, 193-212.
    • (1989) J. Membr. Biol. , vol.112 , pp. 193-212
    • Ottolenghi, M.1    Sheves, M.2
  • 24
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., Pernthaler, J. and Amann, R. (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol., 68, 3094-3101.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 25
    • 0033824875 scopus 로고    scopus 로고
    • Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems
    • Rappé, M.S., Vergin, K. and Giovannoni, S.J. (2000) Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol. Ecol., 33, 219-232.
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 219-232
    • Rappé, M.S.1    Vergin, K.2    Giovannoni, S.J.3
  • 27
  • 28
    • 0025991585 scopus 로고
    • Replacement of leucine-93 by alanine or threonine slows down the decay of the N and O intermediates in the photocycle of bacteriorhodopsin: Implications for proton uptake and 13-cis-retinal-all-trans retinal reisomerization
    • Subramaniam, S., Greenhalgh, D.A., Rath, P., Rothschild, K.J. and Khorana, H.G. (1991) Replacement of leucine-93 by alanine or threonine slows down the decay of the N and O intermediates in the photocycle of bacteriorhodopsin: implications for proton uptake and 13-cis-retinal-all-trans retinal reisomerization. Proc. Natl Acad. Sci. USA, 88, 6873-6877.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 6873-6877
    • Subramaniam, S.1    Greenhalgh, D.A.2    Rath, P.3    Rothschild, K.J.4    Khorana, H.G.5
  • 29
    • 0030786395 scopus 로고    scopus 로고
    • Mechanisms of spectral tuning in the mouse green cone pigment
    • Sun, H., Macke, J.P. and Nathans, J. (1997) Mechanisms of spectral tuning in the mouse green cone pigment. Proc. Natl Acad. Sci. USA, 94, 8860-8865.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 8860-8865
    • Sun, H.1    Macke, J.P.2    Nathans, J.3
  • 30
    • 0035972956 scopus 로고    scopus 로고
    • Quantitative mapping of bacterioplankton populations in seawater: Field tests across an upwelling plume in Monterey Bay
    • Suzuki, M.T., Preston, C.M., Chavez, F.P. and DeLong, E.F. (2001) Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay. Aquatic Microbiol. Ecol., 24 117-127.
    • (2001) Aquatic Microbiol. Ecol. , vol.24 , pp. 117-127
    • Suzuki, M.T.1    Preston, C.M.2    Chavez, F.P.3    DeLong, E.F.4
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 32
    • 0036498845 scopus 로고    scopus 로고
    • Cyanobacterial photosynthesis in the oceans: The origins and significance of divergent light-harvesting strategies
    • Ting, C.S., Rocap, G., King, J. and Chisholm, S.W. (2002) Cyanobacterial photosynthesis in the oceans: the origins and significance of divergent light-harvesting strategies. Trends Microbiol., 10, 134-142.
    • (2002) Trends Microbiol. , vol.10 , pp. 134-142
    • Ting, C.S.1    Rocap, G.2    King, J.3    Chisholm, S.W.4
  • 33
    • 0031889272 scopus 로고    scopus 로고
    • Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria)
    • Urbach, E., Scanlan, D.J., Distel, D.L., Waterbury, J.B. and Chisholm, S.W. (1998) Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria). J. Mol. Evol., 46, 188-201.
    • (1998) J. Mol. Evol. , vol.46 , pp. 188-201
    • Urbach, E.1    Scanlan, D.J.2    Distel, D.L.3    Waterbury, J.B.4    Chisholm, S.W.5
  • 34
    • 0029610771 scopus 로고
    • Spectral tuning in bacteriorhodopsin in the absence of counterion and coplanarization effects
    • Yan, B., Spudich, J.L., Mazur, P., Vunnam, S., Derguini, F. and Nakanishi, K. (1995) Spectral tuning in bacteriorhodopsin in the absence of counterion and coplanarization effects. J. Biol. Chem., 270, 29668-29670.
    • (1995) J. Biol. Chem. , vol.270 , pp. 29668-29670
    • Yan, B.1    Spudich, J.L.2    Mazur, P.3    Vunnam, S.4    Derguini, F.5    Nakanishi, K.6
  • 35
    • 0035516025 scopus 로고    scopus 로고
    • Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea
    • Zubkov, M.V., Fuchs, B.M., Burkill, P.H. and Amann, R. (2001) Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Appl. Environ. Microbiol., 67, 5210-5218.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5210-5218
    • Zubkov, M.V.1    Fuchs, B.M.2    Burkill, P.H.3    Amann, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.