-
1
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Béjà, O., Aravind, L., Koonin, E.V., Suzuki, M.T., Hadd, A., Nguyen, L.P., et al. (2000a) Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289: 1902-1906.
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Béjà, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
-
2
-
-
0034554741
-
Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
-
Béjà, O., Suzuki, M.T., Koonin, E.V., Aravind, L., Hadd, A., Nguyen, L.P., et al. (2000b) Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environ Microbiol 2: 516-529.
-
(2000)
Environ Microbiol
, vol.2
, pp. 516-529
-
-
Béjà, O.1
Suzuki, M.T.2
Koonin, E.V.3
Aravind, L.4
Hadd, A.5
Nguyen, L.P.6
-
3
-
-
0035859080
-
Proteorhodopsin phototrophy in the ocean
-
Béjà, O., Spudich, E.N., Spudich, J.L., Leclerc, M., and DeLong, E.F. (2001) Proteorhodopsin phototrophy in the ocean. Nature 411: 786-789.
-
(2001)
Nature
, vol.411
, pp. 786-789
-
-
Béjà, O.1
Spudich, E.N.2
Spudich, J.L.3
Leclerc, M.4
DeLong, E.F.5
-
4
-
-
0036135990
-
Comparative genomic analysis of archaeal genotypic variants in a single population, and in two different oceanic provinces
-
Béjà, O., Koonin, E.V., Aravind, L., Taylor, L.T., Seitz, H., Stein, J.L., et al. (2002) Comparative genomic analysis of archaeal genotypic variants in a single population, and in two different oceanic provinces. Appl Environ Microbiol 68: 335-345.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 335-345
-
-
Béjà, O.1
Koonin, E.V.2
Aravind, L.3
Taylor, L.T.4
Seitz, H.5
Stein, J.L.6
-
5
-
-
0028248239
-
Cleavable signal peptides are rarely found in bacterial cytoplasmic membrane proteins
-
Broome-Smith, J.K., Gnaneshan, S., Hunt, L.A., Mehraein-Ghomi, F., Hashemzadeh-Bonehi, L., Tadayyon, M., and Hennessey, E.S. (1994) Cleavable signal peptides are rarely found in bacterial cytoplasmic membrane proteins. Mol Membr Biol 11: 3-8.
-
(1994)
Mol Membr Biol
, vol.11
, pp. 3-8
-
-
Broome-Smith, J.K.1
Gnaneshan, S.2
Hunt, L.A.3
Mehraein-Ghomi, F.4
Hashemzadeh-Bonehi, L.5
Tadayyon, M.6
Hennessey, E.S.7
-
6
-
-
0028066160
-
Genetic exchange and evolutionary divergence in prokaryotes
-
Cohan, F.M. (1994a) Genetic Exchange and Evolutionary Divergence in Prokaryotes. Trends Ecol Evol 9: 175-180.
-
(1994)
Trends Ecol Evol
, vol.9
, pp. 175-180
-
-
Cohan, F.M.1
-
7
-
-
0028173732
-
The effects of rare but promiscuous genetic exchange on evolutionary divergence in prokaryotes
-
Cohan, F.M. (1994b) The Effects of Rare but Promiscuous Genetic Exchange on Evolutionary Divergence in Prokaryotes. Am Nat 143: 965-986.
-
(1994)
Am Nat
, vol.143
, pp. 965-986
-
-
Cohan, F.M.1
-
8
-
-
0035527404
-
Bacterial species and speciation
-
Cohan, F.M. (2001) Bacterial species and speciation. Syst Biol 50: 513-524.
-
(2001)
Syst Biol
, vol.50
, pp. 513-524
-
-
Cohan, F.M.1
-
9
-
-
0037197668
-
Proton transfers in the photochemical reaction cycle of Proteorhodopsin
-
Dioumaev, A.K., Brown, L.S., Shih, J., Spudich, E.N., Spudich, J.L., and Lanyi, J.K. (2002) Proton transfers in the photochemical reaction cycle of Proteorhodopsin. Biochemistry 41: 5348-5358.
-
(2002)
Biochemistry
, vol.41
, pp. 5348-5358
-
-
Dioumaev, A.K.1
Brown, L.S.2
Shih, J.3
Spudich, E.N.4
Spudich, J.L.5
Lanyi, J.K.6
-
10
-
-
0033916615
-
Culturability and in situ abundance of pelagic bacteria from the North Sea
-
Eilers, H., Pernthaler, J., Glockner, F.O., and Amann, R. (2000) Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl Environ Microbiol 66: 3044-3051.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3044-3051
-
-
Eilers, H.1
Pernthaler, J.2
Glockner, F.O.3
Amann, R.4
-
11
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
0033770992
-
Bacterial community structure associated with a dimethyl-sulfoniopropionate-producing North Atlantic algal bloom
-
Gonzalez, J.M., Simo, R., Massana, R., Covert, J.S., Casamayor, E.O., Pedrós-Alió, C., and Moran, M.A. (2000) Bacterial community structure associated with a dimethyl-sulfoniopropionate-producing North Atlantic algal bloom. Appl Environ Microbiol 66: 4237-4246.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4237-4246
-
-
Gonzalez, J.M.1
Simo, R.2
Massana, R.3
Covert, J.S.4
Casamayor, E.O.5
Pedrós-Alió, C.6
Moran, M.A.7
-
13
-
-
0022376704
-
Dating the human-ape splitting by a molecular using clock mitochondrial DNA
-
Hasegawa, M., Kishino, H., and Yano, T. (1985) Dating the human-ape splitting by a molecular using clock mitochondrial DNA. J Mol Evol 22: 160-174.
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
14
-
-
0033534585
-
Evolution of the archaeal rhodopsins: Evolution rate changes by gene duplication and functional differentiation
-
Ihara, K., Umemura, T., Katagiri, I., Kitajima-Ihara, T., Sugiyama, Y., Kimura, Y., and Mukohata, Y. (1999) Evolution of the archaeal rhodopsins: evolution rate changes by gene duplication and functional differentiation. J Mol Biol 285: 163-174.
-
(1999)
J Mol Biol
, vol.285
, pp. 163-174
-
-
Ihara, K.1
Umemura, T.2
Katagiri, I.3
Kitajima-Ihara, T.4
Sugiyama, Y.5
Kimura, Y.6
Mukohata, Y.7
-
15
-
-
0035022795
-
Phylogenetic analysis of the succession of bacterial communities in the Great South Bay (Long Island)
-
Kelly, K.M., and Chistoserdov, A.Y. (2001) Phylogenetic analysis of the succession of bacterial communities in the Great South Bay (Long Island). FEMS Microbiol Ecol 35: 85-95.
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 85-95
-
-
Kelly, K.M.1
Chistoserdov, A.Y.2
-
16
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J., and Doolittle, R.F. (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132.
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
17
-
-
0035433101
-
Ecological aspects of ntcA gene expression and its use as an indicator of the nitrogen status of marine Synechococcus spp.
-
Lindell, D., and Post, A.F. (2001) Ecological aspects of ntcA gene expression and its use as an indicator of the nitrogen status of marine Synechococcus spp. Appl Environ Microbiol 67: 3340-3349.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3340-3349
-
-
Lindell, D.1
Post, A.F.2
-
18
-
-
0038391981
-
Diversification and spectral tuning in marine proteorhodopsins
-
Man, D., Wang, W., Sabehi, G., Aravind, L., Post, A.F., Massana, R., et al. (2003) Diversification and spectral tuning in marine proteorhodopsins. EMBO J 22: 1725-1731.
-
(2003)
EMBO J
, vol.22
, pp. 1725-1731
-
-
Man, D.1
Wang, W.2
Sabehi, G.3
Aravind, L.4
Post, A.F.5
Massana, R.6
-
19
-
-
0023829903
-
'DNA Strider': A 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers
-
Marck, C. (1988) 'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucleic Acids Res 16: 1829-1836.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 1829-1836
-
-
Marck, C.1
-
20
-
-
0030620440
-
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel
-
Massana, R., Murray, A.E., Preston, C.M., and DeLong, E.D. (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel. Appl Environ Microbiol 63: 50-56.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 50-56
-
-
Massana, R.1
Murray, A.E.2
Preston, C.M.3
DeLong, E.D.4
-
21
-
-
0032961349
-
Halobacterial rhodopsins
-
Mukohata, Y., Ihara, K., Tamura, T., and Sugiyama, Y. (1999) Halobacterial rhodopsins. J Biochem 125: 649-657.
-
(1999)
J Biochem
, vol.125
, pp. 649-657
-
-
Mukohata, Y.1
Ihara, K.2
Tamura, T.3
Sugiyama, Y.4
-
22
-
-
0028976712
-
Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
-
Mullins, T.D., Britcshgi, T.B., Krest, R.L., and Giovannoni, S.J. (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol Oceanogr 40: 148-158.
-
(1995)
Limnol Oceanogr
, vol.40
, pp. 148-158
-
-
Mullins, T.D.1
Britcshgi, T.B.2
Krest, R.L.3
Giovannoni, S.J.4
-
23
-
-
0030870289
-
Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
-
Palys, T., Nakamura, L.K., and Cohan, F.M. (1997) Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int J Syst Bacteriol 47: 1145-1156.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 1145-1156
-
-
Palys, T.1
Nakamura, L.K.2
Cohan, F.M.3
-
24
-
-
0036276618
-
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
-
Pernthaler, A., Pernthaler, J., and Amann, R. (2002) Fluorescence In Situ Hybridization and Catalyzed Reporter Deposition for the Identification of Marine Bacteria. Appl Environ Microbiol 68: 3094-3101.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3094-3101
-
-
Pernthaler, A.1
Pernthaler, J.2
Amann, R.3
-
25
-
-
0033824875
-
Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems
-
Rappé, M.S., Vergin, K., and Giovannoni, S.J. (2000) Phylogenetic comparisons of a coastal bacterioplankton community with its counterparts in open ocean and freshwater systems. FEMS Microbiol Ecol 33: 219-232.
-
(2000)
FEMS Microbiol Ecol
, vol.33
, pp. 219-232
-
-
Rappé, M.S.1
Vergin, K.2
Giovannoni, S.J.3
-
26
-
-
0034519206
-
Retinylidene proteins: Structures and functions from Archaea to humans
-
Spudich, J.L., Yang, C.S., Jung, K.H., and Spudich, E.N. (2000) Retinylidene proteins: Structures and functions from Archaea to humans. Annu Rev Cell Dev Biol 16: 365-392.
-
(2000)
Annu Rev Cell Dev Biol
, vol.16
, pp. 365-392
-
-
Spudich, J.L.1
Yang, C.S.2
Jung, K.H.3
Spudich, E.N.4
-
27
-
-
0035972956
-
Quantitative mapping of bacterioplankton populations in seawater: Field tests across an upwelling plume in Monterey Bay
-
Suzuki, M.T., Preston, C.M., Chavez, F.P., and DeLong, E.F. (2001) Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay. Aquat Microbiol Ecol 24: 117-127.
-
(2001)
Aquat Microbiol Ecol
, vol.24
, pp. 117-127
-
-
Suzuki, M.T.1
Preston, C.M.2
Chavez, F.P.3
DeLong, E.F.4
-
29
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
30
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan, S., and Goldman, N. (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18: 691-699.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
31
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang, Z. (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39: 306-314.
-
(1994)
J Mol Evol
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
32
-
-
0030683599
-
PAML: A program package for phylogenetic analyses by maximum likelihood
-
Yang, Z. (1997) PAML: a program package for phylogenetic analyses by maximum likelihood. Cabios 13: 555-556.
-
(1997)
Cabios
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
33
-
-
0035516025
-
Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea
-
Zubkov, M.V., Fuchs, B.M., Burkill, P.H., and Amann, R. (2001) Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Appl Environ Microbiol 67: 5210-5218.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5210-5218
-
-
Zubkov, M.V.1
Fuchs, B.M.2
Burkill, P.H.3
Amann, R.4
|