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Volumn 1, Issue 1, 2007, Pages 48-55

Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas

Author keywords

Flavobacteria; Proteorhodopsin; Retinal; SAR11; SAR86; Spectral tuning

Indexed keywords

PROTEORHODOPSIN; RHODOPSIN; SEA WATER; UNCLASSIFIED DRUG;

EID: 34248191374     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2007.10     Document Type: Article
Times cited : (56)

References (34)
  • 2
    • 0034665853 scopus 로고    scopus 로고
    • Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
    • Béjà O, Aravind L, Koonin EV, Suzuki MT, Hadd A, Nguyen LP et al. (2000). Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289: 1902-1906.
    • (2000) Science , vol.289 , pp. 1902-1906
    • Béjà, O.1    Aravind, L.2    Koonin, E.V.3    Suzuki, M.T.4    Hadd, A.5    Nguyen, L.P.6
  • 4
    • 6944240079 scopus 로고    scopus 로고
    • Darwinian adaptation of proteorhodopsin to different light intensities in the environment
    • Bielawski JP, Dunn KA, Sabehi G, Béjà O. (2004). Darwinian adaptation of proteorhodopsin to different light intensities in the environment. Proc Natl Acad Sci USA 141: 14824-14829.
    • (2004) Proc Natl Acad Sci USA , vol.141 , pp. 14824-14829
    • Bielawski, J.P.1    Dunn, K.A.2    Sabehi, G.3    Béjà, O.4
  • 5
    • 34248217124 scopus 로고    scopus 로고
    • Colwell RK, 2005, EstimateS: statistical estimation of species richness and shared species from samples, version 7.5
    • Colwell RK. (2005). EstimateS: statistical estimation of species richness and shared species from samples, version 7.5. http://purl.oclc.org/estimat.
  • 7
    • 34248139783 scopus 로고    scopus 로고
    • Felsenstein J, 1989, PHYLIP-phylogeny interference package version 3.2, Cladistics 5: 164-166
    • Felsenstein J. (1989). PHYLIP-phylogeny interference package (version 3.2). Cladistics 5: 164-166.
  • 8
    • 32844465575 scopus 로고    scopus 로고
    • Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
    • Frigaard N-U, Martinez A, Mincer TJ, DeLong EF. (2006). Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea. Nature 439: 847-850.
    • (2006) Nature , vol.439 , pp. 847-850
    • Frigaard, N.-U.1    Martinez, A.2    Mincer, T.J.3    DeLong, E.F.4
  • 9
    • 0000262823 scopus 로고    scopus 로고
    • Evolution, diversity and molecular ecology of marine prokaryotes
    • Kirchman DL ed, John Wiley & Sons Inc, New York, NY, USA, pp
    • Giovannoni SJ, Rappé M. (2000). Evolution, diversity and molecular ecology of marine prokaryotes. In: Kirchman DL (ed). Microbial Ecology of the Oceans. John Wiley & Sons Inc.: New York, NY, USA, pp 47-84.
    • (2000) Microbial Ecology of the Oceans , pp. 47-84
    • Giovannoni, S.J.1    Rappé, M.2
  • 13
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans
    • Gordon DA, Giovannoni SJ. (1996). Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans. Appl Environ Microbiol 62: 1171-1177.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 14
    • 34248177446 scopus 로고    scopus 로고
    • CLUSTERER: Extendable java application for sequence grouping and cluster analyses
    • Klepac-Ceraj V, Ceraj I, Polz MF. (2006). CLUSTERER: extendable java application for sequence grouping and cluster analyses. Online J Bioinf 7: 15-21.
    • (2006) Online J Bioinf , vol.7 , pp. 15-21
    • Klepac-Ceraj, V.1    Ceraj, I.2    Polz, M.F.3
  • 15
    • 0038391981 scopus 로고    scopus 로고
    • Diversification and spectral tuning in marine proteorhodopsins
    • Man D, Wang W, Sabehi G, Aravind L, Post AF, Massana R et al. (2003). Diversification and spectral tuning in marine proteorhodopsins. EMBO J 22: 1725-1731.
    • (2003) EMBO J , vol.22 , pp. 1725-1731
    • Man, D.1    Wang, W.2    Sabehi, G.3    Aravind, L.4    Post, A.F.5    Massana, R.6
  • 16
    • 34248151050 scopus 로고    scopus 로고
    • Proteorhodopsin photosystem gene expression enables photophosphorylation in heterologous host
    • 10.1073/pnas.0611470104
    • Martinez A, Bradley AS, Waldbauer J, Summons RE, DeLong EF. (2007). Proteorhodopsin photosystem gene expression enables photophosphorylation in heterologous host. Proc Natl Acad Sci USA, 10.1073/pnas.0611470104.
    • (2007) Proc Natl Acad Sci USA
    • Martinez, A.1    Bradley, A.S.2    Waldbauer, J.3    Summons, R.E.4    DeLong, E.F.5
  • 17
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel
    • Massana R, Murray AE, Preston CM, DeLong ED. (1997). Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel. Appl Environ Microbiol 63: 50-56.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    DeLong, E.D.4
  • 18
    • 33947101507 scopus 로고    scopus 로고
    • Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla
    • McCarren J, DeLong EF. (2007). Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla. Environ Microbiol 9: 846-858.
    • (2007) Environ Microbiol , vol.9 , pp. 846-858
    • McCarren, J.1    DeLong, E.F.2
  • 19
    • 0038009383 scopus 로고    scopus 로고
    • Novel dinoflagellate clock-related genes identified through microarray analysis
    • Okamoto OK, Hastings aJW. (2003). Novel dinoflagellate clock-related genes identified through microarray analysis. J Phycol 39: 519-526.
    • (2003) J Phycol , vol.39 , pp. 519-526
    • Okamoto, O.K.1    aJW, H.2
  • 22
    • 23944505538 scopus 로고    scopus 로고
    • New insights into metabolic properties of marine bacteria encoding proteorhodopsins
    • Sabehi G, Loy A, Jung KH, Partha R, Spudich JL, Isaacson T et al. (2005). New insights into metabolic properties of marine bacteria encoding proteorhodopsins. PLoS Biol 3: e273.
    • (2005) PLoS Biol , vol.3
    • Sabehi, G.1    Loy, A.2    Jung, K.H.3    Partha, R.4    Spudich, J.L.5    Isaacson, T.6
  • 23
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 24
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: A test to compare gene libraries
    • Schloss PD, Larget BR, Handelsman J. (2004). Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70: 5485-5492.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 25
    • 33749557420 scopus 로고    scopus 로고
    • Microbial rhodopsins: Functional versatility and genetic mobility
    • Sharma AK, Spudich JL, Doolittle WE (2006). Microbial rhodopsins: functional versatility and genetic mobility. Trends Microbiol 14: 463-469.
    • (2006) Trends Microbiol , vol.14 , pp. 463-469
    • Sharma, A.K.1    Spudich, J.L.2    Doolittle, W.E.3
  • 26
  • 27
    • 34247488726 scopus 로고    scopus 로고
    • The SAR92 clade: An abundant coastal clade of culturable marine bacteria possessing proteorhodopsin
    • doi:10.1128/AEM.02559-06
    • Stingl U, Desiderio RA, Cho J-C, Vergin KL, Giovannoni SJ. (2007). The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Appl Environ Microbiol, doi:10.1128/AEM.02559-06.
    • (2007) Appl Environ Microbiol
    • Stingl, U.1    Desiderio, R.A.2    Cho, J.-C.3    Vergin, K.L.4    Giovannoni, S.J.5
  • 28
    • 8544227657 scopus 로고    scopus 로고
    • Adaptive divergence in pigment composition promotes phytoplankton biodiversity
    • Stomp M, Huisman J, De Jongh F, Veraart AJ, Gerla D, Rijkeboer M et al. (2004). Adaptive divergence in pigment composition promotes phytoplankton biodiversity. Nature 432: 104-107.
    • (2004) Nature , vol.432 , pp. 104-107
    • Stomp, M.1    Huisman, J.2    De Jongh, F.3    Veraart, A.J.4    Gerla, D.5    Rijkeboer, M.6
  • 29
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki MT, Giovannoni SJ. (1996). Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62: 625-630.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 30
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.