메뉴 건너뛰기




Volumn 9, Issue 4, 2013, Pages 615-620

A strategy for sequencing based on rolling-circle amplification on a microarray

Author keywords

DNA Colony; DNA Sequencing; Microarray; RCA

Indexed keywords

DNA POLYMERASE; DNA SEQUENCING; HIGH-THROUGHPUT SEQUENCING; HYPERBRANCHED; NEXT-GENERATION DNA SEQUENCING; POLYACRYLAMIDE GELS; RCA; ROLLING CIRCLE AMPLIFICATIONS;

EID: 84876563604     PISSN: 15507033     EISSN: 15507041     Source Type: Journal    
DOI: 10.1166/jbn.2013.1576     Document Type: Article
Times cited : (8)

References (45)
  • 1
    • 77955007403 scopus 로고    scopus 로고
    • An efficient strategy for sequencing-by-synthesis
    • L. Gao, H. Lu, L. Xu, and Z. Lu, An efficient strategy for sequencing-by-synthesis. J. Nanosci. Nanotechnol. 10, 2988 (2010).
    • (2010) J. Nanosci. Nanotechnol. , vol.10 , pp. 2988
    • Gao, L.1    Lu, H.2    Xu, L.3    Lu, Z.4
  • 2
    • 68249105549 scopus 로고    scopus 로고
    • The removal of fluorescence in sequencing-bysynthesis
    • L. Gao and Z. Lu, The removal of fluorescence in sequencing-bysynthesis. Biochem. Biophys. Res. Commun. 387, 421 (2009).
    • (2009) Biochem. Biophys. Res. Commun. , vol.387 , pp. 421
    • Gao, L.1    Lu, Z.2
  • 6
    • 84863020187 scopus 로고    scopus 로고
    • A new assay for CCR5del32 mutation: Genotyping through the number of fragments amplified
    • Q. Wang, L. Xiao, J. Zhang, N. He, X. Lu, P. Li, and K. Li, A new assay for CCR5del32 mutation: Genotyping through the number of fragments amplified. J. Biomed. Nanotechnol. 7, 754 (2011).
    • (2011) J. Biomed. Nanotechnol. , vol.7 , pp. 754
    • Wang, Q.1    Xiao, L.2    Zhang, J.3    He, N.4    Lu, X.5    Li, P.6    Li, K.7
  • 7
    • 80052679933 scopus 로고    scopus 로고
    • Next-generation sequencing of microRNAs for breast cancer detection
    • Q. Wu, Z. Lu, H. Li, J. Lu, L. Guo, and Q. Ge, Next-generation sequencing of microRNAs for breast cancer detection. J. Biomed. Biotechnol. 597, 145 (2011).
    • (2011) J. Biomed. Biotechnol. , vol.597 , pp. 145
    • Wu, Q.1    Lu, Z.2    Li, H.3    Lu, J.4    Guo, L.5    Ge, Q.6
  • 8
    • 80052903248 scopus 로고    scopus 로고
    • A new strategy for next generation sequencing: Merging the Sanger's method and the sequencing by synthesis through replacing extension
    • L. Xiao, J. Zhang, P. Sirois, N. He, and K. Li, A new strategy for next generation sequencing: Merging the Sanger's method and the sequencing by synthesis through replacing extension. J. Nanosci. Nanotechnol. 7, 568 (2011).
    • (2011) J. Nanosci. Nanotechnol. , vol.7 , pp. 568
    • Xiao, L.1    Zhang, J.2    Sirois, P.3    He, N.4    Li, K.5
  • 9
    • 77049120775 scopus 로고    scopus 로고
    • Accelerator MS is a powerful new tool
    • K. Marusina, Accelerator MS is a powerful new tool. Genet. Eng. Biotechn. N. 26, 20 (2006).
    • (2006) Genet. Eng. Biotechn. N. , vol.26 , pp. 20
    • Marusina, K.1
  • 11
    • 0035836707 scopus 로고    scopus 로고
    • Directed evolution of polymerase function by compartmentalized self-replication
    • F. J. Ghadessy, J. L. Ong, and P. Holliger, Directed evolution of polymerase function by compartmentalized self-replication. Proc. Natl. Acad. Sci. USA 98, 4552 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4552
    • Ghadessy, F.J.1    Ong, J.L.2    Holliger, P.3
  • 12
    • 84864720232 scopus 로고    scopus 로고
    • Solid-phase PCR in a picowell array for immobilizing and arraying 100,000 PCR products to a microscope slide
    • J. Hoffmann, M. Trotter, F. von Stetten, R. Zengerle, and G. Roth, Solid-phase PCR in a picowell array for immobilizing and arraying 100,000 PCR products to a microscope slide. Lab Chip 12, 3049 (2012).
    • (2012) Lab Chip , vol.12 , pp. 3049
    • Hoffmann, J.1    Trotter, M.2    Von Stetten, F.3    Zengerle, R.4    Roth, G.5
  • 13
    • 0033573165 scopus 로고    scopus 로고
    • In situ localized amplification and contact replication of many individual DNA molecules
    • R. D. Mitra and G. M. Church, In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Res. 27, e34 (1999).
    • (1999) Nucleic Acids Res. , vol.27
    • Mitra, R.D.1    Church, G.M.2
  • 14
    • 84863902402 scopus 로고    scopus 로고
    • Sequencing the MiRNAs in maternal plasma from women before and after parturition
    • M. Pan, Q. Ge, H. Li, Q. Yang, J. Lu, D. Zhang, and Z. Lu, Sequencing the MiRNAs in maternal plasma from women before and after parturition. J. Nanosci. Nanotechnol. 12, 4035 (2012).
    • (2012) J. Nanosci. Nanotechnol. , vol.12 , pp. 4035
    • Pan, M.1    Ge, Q.2    Li, H.3    Yang, Q.4    Lu, J.5    Zhang, D.6    Lu, Z.7
  • 15
    • 77955096110 scopus 로고    scopus 로고
    • A novel automated assay with dual-color hybridization for single-nucleotide 4 polymorphisms genotyping on gold magnetic nanoparticle array
    • S. Li, H. Liu, L. Liu, L. Tian, and N. He, A novel automated assay with dual-color hybridization for single-nucleotide 4 polymorphisms genotyping on gold magnetic nanoparticle array. Anal. Biochem. 405, 141 (2010).
    • (2010) Anal. Biochem. , vol.405 , pp. 141
    • Li, S.1    Liu, H.2    Liu, L.3    Tian, L.4    He, N.5
  • 16
    • 79961012866 scopus 로고    scopus 로고
    • Analysis of CpG Island methylation using rolling circle amplification (RCA) product microarray
    • H. Zhao, X. Ma, M. Li, D. Zhou, and P. Xiao, Analysis of CpG Island methylation using rolling circle amplification (RCA) product microarray. J. Biomed. Nanotechnol. 7, 292 (2011).
    • (2011) J. Biomed. Nanotechnol. , vol.7 , pp. 292
    • Zhao, H.1    Ma, X.2    Li, M.3    Zhou, D.4    Xiao, P.5
  • 17
    • 39449104489 scopus 로고    scopus 로고
    • Methylation pattern analysis using high-throughput microarray of solid-phase hyperbranched rolling circle amplification products
    • D. Zhou, R. Zhang, R. Fang, L. Cheng, P. Xiao, and Z. Lu, Methylation pattern analysis using high-throughput microarray of solid-phase hyperbranched rolling circle amplification products. Electrophoresis 29, 626 (2008).
    • (2008) Electrophoresis , vol.29 , pp. 626
    • Zhou, D.1    Zhang, R.2    Fang, R.3    Cheng, L.4    Xiao, P.5    Lu, Z.6
  • 18
    • 84865324038 scopus 로고    scopus 로고
    • Electrochemical detection of E. coli O157:H7 using porous pseudo-carbon paste electrode modified with carboxylic multi-walled carbon nanotubes, glutaraldehyde and 3-aminopropyltriethoxysilane
    • L. Xu, J. Du, Y. Deng, and N. He, Electrochemical detection of E. coli O157:H7 using porous pseudo-carbon paste electrode modified with carboxylic multi-walled carbon nanotubes, glutaraldehyde and 3-aminopropyltriethoxysilane. J. Biomed. Nanotechnol. 8, 1006 (2012).
    • (2012) J. Biomed. Nanotechnol. , vol.8 , pp. 1006
    • Xu, L.1    Du, J.2    Deng, Y.3    He, N.4
  • 19
    • 84866132161 scopus 로고    scopus 로고
    • Novel surface plasmon resonance sensor for the detection of heme at biological levels via highly selective recognition by apo-hemoglobin
    • V. A. Briand, V. Thilakarathne, R. M. Kasi, and C. V. Kumar, Novel surface plasmon resonance sensor for the detection of heme at biological levels via highly selective recognition by apo-hemoglobin. Talanta 99, 113 (2012).
    • (2012) Talanta , vol.99 , pp. 113
    • Briand, V.A.1    Thilakarathne, V.2    Kasi, R.M.3    Kumar, C.V.4
  • 20
    • 84866254089 scopus 로고    scopus 로고
    • A nanoscale graphene oxide-peptide biosensor for real-time specific biomarker detection on the cell surface
    • (Camb).
    • Z. Wang, P. Huang, A. Bhirde, A. Jin, Y. Ma, G. Niu, N. Neamati, and X. Chen, A nanoscale graphene oxide-peptide biosensor for real-time specific biomarker detection on the cell surface. Chem. Commun. (Camb). 48, 9768 (2012).
    • (2012) Chem. Commun. , vol.48 , pp. 9768
    • Wang, Z.1    Huang, P.2    Bhirde, A.3    Jin, A.4    Ma, Y.5    Niu, G.6    Neamati, N.7    Chen, X.8
  • 21
    • 84856891091 scopus 로고    scopus 로고
    • Rapid detection of bacteria by carbon quantum dots
    • T. K. Mandal and N. Parvin, Rapid detection of bacteria by carbon quantum dots. J. Biomed. Nanotechnol. 7, 846 (2011).
    • (2011) J. Biomed. Nanotechnol. , vol.7 , pp. 846
    • Mandal, T.K.1    Parvin, N.2
  • 22
    • 84866386310 scopus 로고    scopus 로고
    • Direct detection of adenosine in undiluted serum using a luminescent aptamer sensor attached to a terbium complex
    • L. Li, P. Ge, P. R. Selvin, and Y. Lu, Direct detection of adenosine in undiluted serum using a luminescent aptamer sensor attached to a terbium complex. Anal. Chem. 84, 7852 (2012).
    • (2012) Anal. Chem. , vol.84 , pp. 7852
    • Li, L.1    Ge, P.2    Selvin, P.R.3    Lu, Y.4
  • 23
    • 79957689751 scopus 로고    scopus 로고
    • Rapid detection of enterotoxigenic escherichia coli gene using bioconjugated gold nano-particles
    • A. Jyotil, S. P. Singh, M. Yashpal, P. D. Dwivedi, and R. Shanker, Rapid detection of enterotoxigenic escherichia coli gene using bioconjugated gold nano-particles. J. Biomed. Nanotechnol. 7, 170 (2011).
    • (2011) J. Biomed. Nanotechnol. , vol.7 , pp. 170
    • Jyotil, A.1    Singh, S.P.2    Yashpal, M.3    Dwivedi, P.D.4    Shanker, R.5
  • 24
    • 84864382888 scopus 로고    scopus 로고
    • Design and development of a whole-cell luminescent biosensor for detection of early-stage of apoptosis
    • M. Torkzadeh-Mahani, F. Ataei, M. Nikkhah, and S. Hosseinkhani, Design and development of a whole-cell luminescent biosensor for detection of early-stage of apoptosis. Biosens. Bioelectron. 38, 362 (2012).
    • (2012) Biosens. Bioelectron. , vol.38 , pp. 362
    • Torkzadeh-Mahani, M.1    Ataei, F.2    Nikkhah, M.3    Hosseinkhani, S.4
  • 25
    • 84862272226 scopus 로고    scopus 로고
    • A CCD-based reader combined quantum dots-labeled lateral flow strips for ultrasensitive quantitative detection of anti-HBs antibody
    • X. Zhang, D. Li, C. Wang, X. Zhi, C. Zhang, K. Wang, and D. Cui, A CCD-based reader combined quantum dots-labeled lateral flow strips for ultrasensitive quantitative detection of anti-HBs antibody. J. Biomed. Nanotechnol. 8, 372 (2012).
    • (2012) J. Biomed. Nanotechnol. , vol.8 , pp. 372
    • Zhang, X.1    Li, D.2    Wang, C.3    Zhi, X.4    Zhang, C.5    Wang, K.6    Cui, D.7
  • 26
    • 84865001222 scopus 로고    scopus 로고
    • A new strategy for the detection of adenosine triphosphate by aptamer/quantum dot biosensor based on chemiluminescence resonance energy transfer
    • Z. Zhou, Y. Yu, and Y. Zhao, A new strategy for the detection of adenosine triphosphate by aptamer/quantum dot biosensor based on chemiluminescence resonance energy transfer. Analyst 137, 4262 (2012).
    • (2012) Analyst , vol.137 , pp. 4262
    • Zhou, Z.1    Yu, Y.2    Zhao, Y.3
  • 27
    • 79953017737 scopus 로고    scopus 로고
    • Detection of the cancer marker CD146 expression in melanoma cells with semiconductor quantum dot label
    • H. Zheng, G. Chen, L. A. DeLouise, and Z. Lou, Detection of the cancer marker CD146 expression in melanoma cells with semiconductor quantum dot label. J. Biomed. Nanotechnol. 6, 303 (2010).
    • (2010) J. Biomed. Nanotechnol. , vol.6 , pp. 303
    • Zheng, H.1    Chen, G.2    Delouise, L.A.3    Lou, Z.4
  • 28
    • 58349092739 scopus 로고    scopus 로고
    • Multiplex single nucleotide polymorphisms genotyping using solid-phase single base extension on magnetic nanoparticles
    • H. Liu, S. Li, L. Liu, L. Tian, and N. He, Multiplex single nucleotide polymorphisms genotyping using solid-phase single base extension on magnetic nanoparticles. Anal. Biochem. 386, 126 (2009).
    • (2009) Anal. Biochem. , vol.386 , pp. 126
    • Liu, H.1    Li, S.2    Liu, L.3    Tian, L.4    He, N.5
  • 29
    • 77958097870 scopus 로고    scopus 로고
    • A proof-of-principle demonstration of a novel microarray-based method for quantifying DNA methylation levels
    • X. Zhang, D. Zhou, M. Zhao, Y. Luo, P. Zhang, Z. Lu, and Q. Lu, A proof-of-principle demonstration of a novel microarray-based method for quantifying DNA methylation levels. Mol. Biotechnol. 46, 243 (2010).
    • (2010) Mol. Biotechnol. , vol.46 , pp. 243
    • Zhang, X.1    Zhou, D.2    Zhao, M.3    Luo, Y.4    Zhang, P.5    Lu, Z.6    Lu, Q.7
  • 30
    • 76749160360 scopus 로고    scopus 로고
    • An automated MagStation for high-throughput SNP genotyping and the dual-color hybridization
    • L. Tian, S. Li, H. Liu, Z. Wang, and N. He, An automated MagStation for high-throughput SNP genotyping and the dual-color hybridization. J. Biomed. Nanotechnol. 5, 511 (2009).
    • (2009) J. Biomed. Nanotechnol. , vol.5 , pp. 511
    • Tian, L.1    Li, S.2    Liu, H.3    Wang, Z.4    He, N.5
  • 31
    • 84872368746 scopus 로고    scopus 로고
    • A novel SNPs detection method based on magnetic nanoparticles array and single base extension
    • S. Li, H. Liu, Y. Jia, Y. Deng, L. Zhang, Z. Lu, and N. He, A novel SNPs detection method based on magnetic nanoparticles array and single base extension. Theranostics 2, 967 (2012).
    • (2012) Theranostics , vol.2 , pp. 967
    • Li, S.1    Liu, H.2    Jia, Y.3    Deng, Y.4    Zhang, L.5    Lu, Z.6    He, N.7
  • 32
    • 84863076165 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms analysis of noise-induced hearing loss using three-dimensional polyacrylamide gel-based microarray method
    • G. Xia, W. Gao, K. Ji, S. Liu, B. Wan, J. Luo, and Y. Bai, Single nucleotide polymorphisms analysis of noise-induced hearing loss using three-dimensional polyacrylamide gel-based microarray method. J. Biomed. Nanotechnol. 7, 807 (2011).
    • (2011) J. Biomed. Nanotechnol. , vol.7 , pp. 807
    • Xia, G.1    Gao, W.2    Ji, K.3    Liu, S.4    Wan, B.5    Luo, J.6    Bai, Y.7
  • 33
    • 33751431793 scopus 로고    scopus 로고
    • Magnetic particles-based high-throughput genotyping method with dual-color fluorescence hybridization
    • S. Li, H. Liu, Z. Wang, P. Hou, Y. Guo, Q. He, and N. He, Magnetic particles-based high-throughput genotyping method with dual-color fluorescence hybridization. Anal. Biochem. 359, 277 (2006).
    • (2006) Anal. Biochem. , vol.359 , pp. 277
    • Li, S.1    Liu, H.2    Wang, Z.3    Hou, P.4    Guo, Y.5    He, Q.6    He, N.7
  • 34
    • 54349095194 scopus 로고    scopus 로고
    • Automated detection system of single nucleotide polymorphisms using two kinds of functional magnetic nanoparticles
    • H. Liu, S. Li, Z. Wang, Z. Li, Y. Deng, H. Wang, Z. Shi, and N. He, Automated detection system of single nucleotide polymorphisms using two kinds of functional magnetic nanoparticles. Appl. Surf. Sci. 255, 600 (2008).
    • (2008) Appl. Surf. Sci. , vol.255 , pp. 600
    • Liu, H.1    Li, S.2    Wang, Z.3    Li, Z.4    Deng, Y.5    Wang, H.6    Shi, Z.7    He, N.8
  • 35
    • 84863064277 scopus 로고    scopus 로고
    • Discrimination of single nucleotide mutation by using a new class of immobilized shared-stem double-stranded DNA probes
    • Y. Bai, D. Lin, Q. Han, Y. Jia, J. Tu, J. Luo, Q. Ge, D. Zhang, and Z. Lu, Discrimination of single nucleotide mutation by using a new class of immobilized shared-stem double-stranded DNA probes. J. Biomed. Nanotechnol. 7, 640 (2011).
    • (2011) J. Biomed. Nanotechnol. , vol.7 , pp. 640
    • Bai, Y.1    Lin, D.2    Han, Q.3    Jia, Y.4    Tu, J.5    Luo, J.6    Ge, Q.7    Zhang, D.8    Lu, Z.9
  • 36
    • 34548435245 scopus 로고    scopus 로고
    • Highthroughput SNP genotyping based on solid-phase PCR on magnetic nanoparticles with dual-color hybridization
    • H. Liu, S. Li, Z. Wang, M. Ji, L. Nie, and N. He, Highthroughput SNP genotyping based on solid-phase PCR on magnetic nanoparticles with dual-color hybridization. J. Biotechnol. 131, 217 (2007).
    • (2007) J. Biotechnol. , vol.131 , pp. 217
    • Liu, H.1    Li, S.2    Wang, Z.3    Ji, M.4    Nie, L.5    He, N.6
  • 37
    • 40649093543 scopus 로고    scopus 로고
    • An electrochemical approach for detection of specific DNA-binding protein by gold nanoparticle-catalyzed silver enhancement
    • Q. Pan, R. Zhang, Y. Bai, N. He, and Z. Lu, An electrochemical approach for detection of specific DNA-binding protein by gold nanoparticle-catalyzed silver enhancement. Anal. Biochem. 375, 179 (2008).
    • (2008) Anal. Biochem. , vol.375 , pp. 179
    • Pan, Q.1    Zhang, R.2    Bai, Y.3    He, N.4    Lu, Z.5
  • 38
    • 84865127542 scopus 로고    scopus 로고
    • Chemiluminescence molecular detection of sequence-specific HBV-DNA using magnetic nanoparticles
    • F. Wang, C. Ma, X. Zeng, C. Li, Y. Deng, and N. He, Chemiluminescence molecular detection of sequence-specific HBV-DNA using magnetic nanoparticles. J. Biomed. Nanotechnol. 8, 786 (2012).
    • (2012) J. Biomed. Nanotechnol. , vol.8 , pp. 786
    • Wang, F.1    Ma, C.2    Zeng, X.3    Li, C.4    Deng, Y.5    He, N.6
  • 39
    • 78649734991 scopus 로고    scopus 로고
    • An integrated and sensitive detection platform for biosensing application based on Fe@Au magnetic nanoparticles as bead array carries
    • H. Liu, S. Li, L. Liu, L. Tian, and N. He, An integrated and sensitive detection platform for biosensing application based on Fe@Au magnetic nanoparticles as bead array carries. Biosens. Bioelectron. 26, 1442 (2010).
    • (2010) Biosens. Bioelectron. , vol.26 , pp. 1442
    • Liu, H.1    Li, S.2    Liu, L.3    Tian, L.4    He, N.5
  • 40
    • 49849088577 scopus 로고    scopus 로고
    • Development of a fluorescent and colorimetric detection methodsbased protein microarray for serodiagnosis of TORCH infections
    • L. Jiang, Z. Yu, W. Du, Z. Tang, T. Jiang, C. Zhang, and Z. Lu, Development of a fluorescent and colorimetric detection methodsbased protein microarray for serodiagnosis of TORCH infections. Biosens. Bioelectron. 24, 376 (2008).
    • (2008) Biosens. Bioelectron. , vol.24 , pp. 376
    • Jiang, L.1    Yu, Z.2    Du, W.3    Tang, Z.4    Jiang, T.5    Zhang, C.6    Lu, Z.7
  • 41
    • 84876517194 scopus 로고    scopus 로고
    • An automatic high-throughput SNP genotyping approach based on universal tagged arrays and magnetic nanoparticles
    • in press
    • S. Li, H. Liu, Y. Jia, X. Mou, Y. Deng, L. Lin, and N. He, An automatic high-throughput SNP genotyping approach based on universal tagged arrays and magnetic nanoparticles. J. Biomed. Nanotechnol. in press (2013).
    • (2013) J. Biomed. Nanotechnol.
    • Li, S.1    Liu, H.2    Jia, Y.3    Mou, X.4    Deng, Y.5    Lin, L.6    He, N.7
  • 42
    • 84863046680 scopus 로고    scopus 로고
    • Single nucleotide variation detection on 3D DNA microarray by ligation of two-terminal-modified, universal probes
    • P. Xiao, J. Chen, J. Tang, and Z. Lu, Single nucleotide variation detection on 3D DNA microarray by ligation of two-terminal-modified, universal probes. J. Nanosci. Nanotechnol. 11, 7627 (2011).
    • (2011) J. Nanosci. Nanotechnol. , vol.11 , pp. 7627
    • Xiao, P.1    Chen, J.2    Tang, J.3    Lu, Z.4
  • 43
    • 34447292144 scopus 로고    scopus 로고
    • Gel immobilization of acrylamide-modified single-stranded DNA template for pyrosequencing
    • P. Xiao, H. Huang, G. Zhou, and Z. Lu, Gel immobilization of acrylamide-modified single-stranded DNA template for pyrosequencing. Electrophoresis 28, 1903 (2007).
    • (2007) Electrophoresis , vol.28 , pp. 1903
    • Xiao, P.1    Huang, H.2    Zhou, G.3    Lu, Z.4
  • 45
    • 77955338650 scopus 로고    scopus 로고
    • Massively parallel display of genomic DNA fragments by rolling-circle amplification and strand displacement amplification on chip
    • H. Zhao, L. Gao, J. Luo, D. Zhou, and Z. Lu, Massively parallel display of genomic DNA fragments by rolling-circle amplification and strand displacement amplification on chip. Talanta 82, 477 (2010).
    • (2010) Talanta , vol.82 , pp. 477
    • Zhao, H.1    Gao, L.2    Luo, J.3    Zhou, D.4    Lu, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.