Emission lineshapes of the B850 band of light-harvesting 2 (LH2) complex in purple bacteria: A second order time-nonlocal quantum master equation approach

Journal of Chemical Physics

Volumn 138, Issue 13, 2013, Pages

  Kumar, Praveen ^a   Jang, Seogjoo ^a  

^a CITY UNIVERSITY OF NEW YORK   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION LINESHAPE; EXCITED STATE DENSITIES; EXCITON-PHONON COUPLINGS; LIGHT HARVESTING COMPLEXES; OFF-DIAGONAL COMPONENTS; QUANTUM MASTER EQUATION APPROACH; QUANTUM MASTER EQUATIONS; SECULAR APPROXIMATION;

BACTERIA; QUANTUM ENTANGLEMENT;

EXCITONS;

BACTERIAL PROTEIN;

ALGORITHM; ARTICLE; CHEMICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; ENERGY TRANSFER; LIGHT; LIGHT HARVESTING SYSTEM; PROTEOBACTERIA; QUANTUM THEORY;

ALGORITHMS; BACTERIAL PROTEINS; COMPUTER SIMULATION; ENERGY TRANSFER; LIGHT; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, CHEMICAL; PROTEOBACTERIA; QUANTUM THEORY;

EID: 84876157974     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4795824     Document Type: Article

References (62)

1. R. E. Blankenship, Plant Physiol. 154, 434 (2010). 10.1104/pp.110.161687
2. R. E. Blankenship, Photosyn. Res. 33, 91 (1992). 10.1007/BF00039173
3. The Purple Phototrophic Bacteria, edited by, C. N. Hunter, F. Daldal, M. C. Thurnauer, and, J. T. Beatty, (Springer, Netherlands, 2009).
4. R. J. Cogdell, A. Gali, and J. Köhler, Q. Rev. Biophys. 39, 227 (2006). 10.1017/S0033583506004434
5. T. Renger, V. May, and O. Kühn, Phys. Rep. 343, 137 (2001). 10.1016/S0370-1573(00)00078-8
6. G. McDermott, S. M. Prince, A. A. Freer, A. M. Hawthornthwaite-Lawless, M. Z. Papiz, R. J. Cogdell, and N. W. Issacs, Nature (London) 374, 517 (1995). 10.1038/374517a0
7. M. Z. Papiz, S. M. Prince, T. Howard, R. J. Cogdell, and N. W. Isaacs, J. Mol. Biol. 326, 1523 (2003). 10.1016/s0022-2836(03)00024-X
8. A. M. van Oijen, Science 285, 400 (1999). 10.1126/science.285.5426.400
9. X. Hu, T. Ritz, A. Damjanovic, F. Autenrieth, and K. Schulten, Q. Rev. Biophys. 35, 1 (2002). 10.1017/S0033583501003754
10. M. Yang, R. Agarwal, and G. R. Fleming, J. Photochem. Photobiol., A 142, 107 (2001). 10.1016/S1010-6030(01)00504-4
11. J. L. Herek, W. Wohlleben, R. J. Cogdell, D. Zeidler, and M. Motzkus, Nature (London) 417, 533 (2002). 10.1038/417533a
12. C. Hofmann, T. J. Aartsma, H. Michel, and J. Kohler, Proc. Natl. Acad. Sci. U.S.A. 100, 15534 (2003). 10.1073/pnas.2533896100
13. D. Rutkauskas, V. I. Novoderezhkin, R. J. Cogdell, and R. van Grondelle, Biophys. J. 88, 422 (2005). 10.1529/biophysj.104.048629
14. J. Savolainen, R. Fanciulli, N. Dijkhuizen, A. L. Moore, J. Hauer, T. Buckup, M. Motzkus, and J. L. Herek, Proc. Natl. Acad. Sci. U.S.A. 105, 7641 (2008). 10.1073/pnas.0711927105
15. T. J. Pflock, S. Oellerich, J. Southhall, R. J. Cogdell, G. M. Ullmann, and J. Köhler, J. Phys. Chem. B 115, 8813 (2011). 10.1021/jp202353c
16. A. Damjanović, I. Kosztin, U. Kleinekathöfer, and K. Schulten, Phys. Rev. E 65, 031919 (2002). 10.1103/PhysRevE.65.031919
17. O. Kühn, V. Sundström, and T. Pullerits, Chem. Phys. 275, 15 (2002). 10.1016/S0301-0104(01)00526-2
18. S. Jang, M. D. Newton, and R. J. Silbey, Phys. Rev. Lett. 92, 218301 (2004). 10.1103/PhysRevLett.92.218301
19. S. Jang and R. J. Silbey, J. Chem. Phys. 118, 9324 (2003). 10.1063/1.1569240
20. S. Jang, S. E. Dempster, and R. J. Silbey, J. Phys. Chem. B 105, 6655 (2001). 10.1021/jp010169e
21. S. Jang, R. J. Silbey, R. Kunz, C. Hofmann, and J. Köhler, J. Phys. Chem. B 115, 12947 (2011). 10.1021/jp202344s
22. J. Strümpfer and K. Schulten, J. Chem. Phys. 131, 225101 (2009). 10.1063/1.3271348
23. M. Ketelaars, A. M. van Oijen, M. Matsushita, J. Köhler, J. Schmidt, and T. J. Aartsma, Biophys. J. 80, 1591 (2001). 10.1016/S0006-3495(01)76132-2
24. P. Huo and D. F. Coker, J. Chem. Phys. 133, 184108 (2010). 10.1063/1.3498901
25. J. Strümpfer and K. Schulten, J. Chem. Phys. 134, 095102 (2011). 10.1063/1.3557042
26. L. Valkunas, J. Janusonisa, D. Rutkauskas, and R. van Grondelle, J. Lumin. 127, 269 (2007). 10.1016/j.jlumin.2007.02.032
27. M. Schreiber, P. Heman, I. Barvík, I. Kondov, and U. Kleinekathöfer, J. Lumin. 108, 137 (2004). 10.1016/j.jlumin.2004.01.022
28. P. Heman, U. Kleinekathöfer, I. Barvík, and M. Schreiber, Chem. Phys. 275, 1 (2002). 10.1016/S0301-0104(01)00520-1
29. J. Janusonis, L. Valkunas, D. Rutkauskas, and R. van Grondelle, Biophys. J. 94, 1348 (2008). 10.1529/biophysj.107.108431
30. L. Chen, R. Zheng, Q. Shi, and Y. Yan, J. Chem. Phys. 131, 094502 (2009). 10.1063/1.3213013
31. J. Strümpfer, M. Sener, and K. Schulten, J. Phys. Chem. Lett. 3, 536 (2012). 10.1021/jz201459c
32. J. M. Moix, Y. Zhao, and J. Cao, Phys. Rev. B 85, 115412 (2012). 10.1103/PhysRevB.85.115412
33. Y. C. Cheng and R. J. Silbey, Phys. Rev. Lett. 96, 028103 (2006). 10.1103/PhysRevLett.96.028103
34. S. Mukamel, Principles of Nonlinear Spectroscopy (Oxford University Press, New York, 1995).
35. V. Sundstrom, T. Pullerits, and R. vanGrondelle, J. Phys. Chem. B 103, 2327 (1999). 10.1021/jp983722+
36. G. S. Engel, Nature (London) 446, 782 (2007). 10.1038/nature05678
37. E. Collini, Nature (London) 463, 644 (2010). 10.1038/nature08811
38. G. S. Schlau-Cohen, A. Ishizaki, and G. R. Fleming, Chem. Phys. 386, 1 (2011). 10.1016/j.chemphys.2011.04.025
39. E. Harel and G. Engel, Proc. Natl. Acad. Sci. U.S.A. 109, 706 (2012). 10.1073/pnas.1110312109
40. J. Sung and R. J. Silbey, J. Chem. Phys. 115, 9266 (2001). 10.1063/1.1413979
41. D. M. Jonas, Annu. Rev. Phys. Chem. 54, 425 (2003). 10.1146/annurev. physchem.54.011002.103907
42. M. Cho, Chem. Rev. 108, 1331 (2008). 10.1021/cr078377b
43. S. Jang, Bull. Korean Chem. Soc. 33, 997 (2012). 10.5012/bkcs.2012.33.3. 997
44. T. Renger and V. May, Phys. Rev. Lett. 78, 3406 (1997). 10.1103/PhysRevLett.78.3406
45. M. Schröder, U. Kleinekathöfer, and M. Schreiber, J. Chem. Phys. 124, 084903 (2006). 10.1063/1.2171188
46. S. Yang, J. Shao, and J. Cao, J. Chem. Phys. 121, 11250 (2004). 10.1063/1.1812748
47. A. Matro and J. A. Cina, J. Phys. Chem. 99, 2568 (1995). 10.1021/j100009a015
48. R. Kubo, in Fluctuations, Relaxation and Resonance in Magnetic Systems, edited by, D. ter Haar, (Oliver and Boyd, Edinburgh, 1962).
49. S. Jang and R. J. Silbey, J. Chem. Phys. 118, 9312 (2003). 10.1063/1.1569239
50. W. P. F. de Ruijter, J. M. Segura, R. J. Cogdell, A. T. Gardiner, S. Oellerich, and T. J. Aartsma, Chem. Phys. 341, 320 (2007). 10.1016/j.chemphys. 2007.07.050
51. M. A. Bopp, Y. Jia, L. Li, R. J. Cogdell, and R. M. Hochstrasser, Proc. Natl. Acad. Sci. U.S.A. 94, 10630 (1997). 10.1073/pnas.94.20.10630
52. M. A. Bopp, Proc. Natl. Acad. Sci. U.S.A. 96, 11271 (1999). 10.1073/pnas.96.20.11271
53. D. Rutkauskas, V. I. Novoderezhkin, A. Gall, J. Olsen, R. J. Cogdell, C. N. Hunter, and R. van Grondelle, Biophys. J. 90, 2475 (2006). 10.1529/biophysj.105.075903
54. D. Rutkauskas, V. I. Novoderezhkin, R. J. Cogdell, and R. van Grondelle, Biochemistry 43, 4431 (2004). 10.1021/bi0497648
55. V. I. Novoderezhkin, D. Rutkauskas, and R. van Grondelle, Biophys. J. 90, 2890 (2006). 10.1529/biophysj.105.072652
56. D. Zapletal and P. Heman, Int. J. Math. Comput. Simul. 6, 144 (2012).
57. R. Kunz, K. Timpmann, J. Southall, R. J. Cogdell, A. Freiberg, and J. Köhler, J. Phys. Chem. B 116, 11017 (2012). 10.1021/jp3040456
58. C. Hofmann, T. J. Aartsma, and J. Köhler, Chem. Phys. Lett. 395, 373 (2004). 10.1016/j.cplett.2004.08.020
59. M. Matsushita, M. Ketelaars, A. M. van Oijen, J. Köhler, T. J. Aartsma, and J. Schmidt, Biophys. J. 80, 1604 (2001). 10.1016/S0006-3495(01) 76133-4
60. S. Jang, M. D. Newton, and R. J. Silbey, J. Phys. Chem. B 111, 6807 (2007). 10.1021/jp070111l
61. S. Matsuzaki, V. Zazubovich, N. J. Frase, R. J. Cogdell, and G. J. Small, J. Phys. Chem. B 105, 7049 (2001). 10.1021/jp0037347
62. O. Zerlauskiene, G. Trinkunas, A. Gall, B. Robert, V. Urboniene, and L. Valkunas, J. Phys. Chem. B 112, 15883 (2008). 10.1021/jp803439w