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Volumn 133, Issue 18, 2010, Pages

Iterative linearized density matrix propagation for modeling coherent excitation energy transfer in photosynthetic light harvesting

Author keywords

[No Author keywords available]

Indexed keywords

COHERENT EXCITATIONS; COHERENT SUPERPOSITION STATE; DECOHERENCE; DEGREES OF FREEDOM; DENSITY MATRIX; DISCRETE PATH; EXCITON TRANSFER; EXCITONIC SYSTEMS; EXPERIMENTAL EVIDENCE; GENERAL DESCRIPTION; GREEN SULFUR BACTERIA; LIGHT HARVESTING COMPLEXES; LIGHT-HARVESTING SYSTEMS; MARKOVIAN APPROXIMATION; NONPERTURBATIVE; PERTURBATIVE APPROACH; PHOTOSYNTHETIC LIGHT; SHORT TIME APPROXIMATION;

EID: 78449295531     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3498901     Document Type: Article
Times cited : (126)

References (70)
  • 2
    • 0043283159 scopus 로고    scopus 로고
    • ARPLAP 0066-426X,. 10.1146/annurev.physchem.54.011002.103746
    • G. D. Scholes, Annu. Rev. Phys. Chem. ARPLAP 0066-426X 54, 57 (2003). 10.1146/annurev.physchem.54.011002.103746
    • (2003) Annu. Rev. Phys. Chem. , vol.54 , pp. 57
    • Scholes, G.D.1
  • 3
    • 0016766522 scopus 로고
    • NATUAS 0028-0836,. 10.1038/258573a0
    • R. E. Fenna and B. W. Matthews, Nature (London) NATUAS 0028-0836 258, 573 (1975). 10.1038/258573a0
    • (1975) Nature (London) , vol.258 , pp. 573
    • Fenna, R.E.1    Matthews, B.W.2
  • 4
    • 0037235076 scopus 로고    scopus 로고
    • The structure of the FMO protein from Chlorobium tepidum at 2.2 A resolution
    • DOI 10.1023/A:1022406703110
    • A. Camara-Artigas, R. E. Blankenship, and J. P. Allen, Photosynth. Res. PHRSDI 0166-8595 75, 49 (2003). 10.1023/A:1022406703110 (Pubitemid 36333176)
    • (2003) Photosynthesis Research , vol.75 , Issue.1 , pp. 49-55
    • Camara-Artigas, A.1    Blankenship, R.E.2    Allen, J.P.3
  • 8
    • 0031583476 scopus 로고    scopus 로고
    • Crystal structure of the bacteriochlorophyll a protein from Chlorobium tepidum
    • DOI 10.1006/jmbi.1997.1189
    • Y. F. Li, W. L. Zhou, R. E. Blankenship, and J. P. Allen, J. Mol. Biol. JMOBAK 0022-2836 271, 456 (1997). 10.1006/jmbi.1997.1189 (Pubitemid 27348510)
    • (1997) Journal of Molecular Biology , vol.271 , Issue.3 , pp. 456-471
    • Li, Y.-F.1    Zhou, W.2    Blankenship, R.E.3    Allen, J.P.4
  • 10
    • 0031551227 scopus 로고    scopus 로고
    • JPCBFK 1089-5647,. 10.1021/jp970707g
    • E. Sim and N. Makri, J. Phys. Chem. B JPCBFK 1089-5647 101, 5446 (1997). 10.1021/jp970707g
    • (1997) J. Phys. Chem. B , vol.101 , pp. 5446
    • Sim, E.1    Makri, N.2
  • 11
    • 0031267676 scopus 로고    scopus 로고
    • Oscillating anisotropies in a bacteriochlorophyll protein: Evidence for quantum beating between exciton levels
    • DOI 10.1016/S0301-0104(97)00223-1
    • S. Savikhin, D. R. Buck, and W. S. Struve, Chem. Phys. CMPHC2 0301-0104 223, 303 (1997). 10.1016/S0301-0104(97)00223-1 (Pubitemid 128001699)
    • (1997) Chemical Physics , vol.223 , Issue.2-3 , pp. 303-312
    • Savikhin, S.1    Buck, D.R.2    Struve, W.S.3
  • 13
    • 34250185415 scopus 로고    scopus 로고
    • Coherence dynamics in photosynthesis: Protein protection of excitonic coherence
    • DOI 10.1126/science.1142188
    • H. Lee, Y. -C. Cheng, and G. R. Fleming, Science SCIEAS 0036-8075 316, 1462 (2007). 10.1126/science.1142188 (Pubitemid 46906609)
    • (2007) Science , vol.316 , Issue.5830 , pp. 1462-1465
    • Lee, H.1    Cheng, Y.-C.2    Fleming, G.R.3
  • 17
    • 3142547279 scopus 로고    scopus 로고
    • PRLTAO 0031-9007,. 10.1103/PhysRevLett.92.218301
    • S. Jang, M. D. Newton, and R. J. Silbey, Phys. Rev. Lett. PRLTAO 0031-9007 92, 218301 (2004). 10.1103/PhysRevLett.92.218301
    • (2004) Phys. Rev. Lett. , vol.92 , pp. 218301
    • Jang, S.1    Newton, M.D.2    Silbey, R.J.3
  • 19
    • 32644472071 scopus 로고    scopus 로고
    • Coherence in the B800 ring of purple bacteria LH2
    • DOI 10.1103/PhysRevLett.96.028103
    • Y. -C. Cheng and R. J. Silbey, Phys. Rev. Lett. PRLTAO 0031-9007 96, 028103 (2006). 10.1103/PhysRevLett.96.028103 (Pubitemid 43248297)
    • (2006) Physical Review Letters , vol.96 , Issue.2 , pp. 028103
    • Cheng, Y.C.1    Silbey, R.J.2
  • 21
    • 33846478315 scopus 로고    scopus 로고
    • Electronic excitation energy transfer between two single molecules embedded in a polymer host
    • DOI 10.1103/PhysRevLett.98.047802
    • R. Ḿtivier, F. Nolde, K. Muellen, and T. Basch́, Phys. Rev. Lett. PRLTAO 0031-9007 98, 047802 (2007). 10.1103/PhysRevLett.98.047802 (Pubitemid 46168670)
    • (2007) Physical Review Letters , vol.98 , Issue.4 , pp. 047802
    • Metivier, R.1    Nolde, F.2    Mullen, K.3    Basche, T.4
  • 22
    • 28844469411 scopus 로고    scopus 로고
    • Decoherence of excitons in multichromophore systems: Thermal line broadening and destruction of superradiant emission
    • DOI 10.1103/PhysRevLett.95.177402, 177402
    • D. J. Heijs, V. A. Malyshev, and J. Knoester, Phys. Rev. Lett. PRLTAO 0031-9007 95, 177402 (2005). 10.1103/PhysRevLett.95.177402 (Pubitemid 41777393)
    • (2005) Physical Review Letters , vol.95 , Issue.17 , pp. 1-4
    • Heijs, D.J.1    Malyshev, V.A.2    Knoester, J.3
  • 24
    • 35948996110 scopus 로고    scopus 로고
    • Generalization of the Forster resonance energy transfer theory for quantum mechanical modulation of the donor-acceptor coupling
    • DOI 10.1063/1.2779031
    • S. Jang, J. Chem. Phys. JCPSA6 0021-9606 127, 174710 (2007). 10.1063/1.2779031 (Pubitemid 350075546)
    • (2007) Journal of Chemical Physics , vol.127 , Issue.17 , pp. 174710
    • Jang, S.1
  • 25
    • 0038617364 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.1569239
    • S. Jang, M. D. Newton, and R. J. Silbey, J. Chem. Phys. JCPSA6 0021-9606 118, 9312 (2003). 10.1063/1.1569239
    • (2003) J. Chem. Phys. , vol.118 , pp. 9312
    • Jang, S.1    Newton, M.D.2    Silbey, R.J.3
  • 26
    • 0038617363 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.1569240
    • S. Jang and R. J. Silbey, J. Chem. Phys. JCPSA6 0021-9606 118, 9324 (2003). 10.1063/1.1569240
    • (2003) J. Chem. Phys. , vol.118 , pp. 9324
    • Jang, S.1    Silbey, R.J.2
  • 29
    • 26044455380 scopus 로고    scopus 로고
    • A reduced density-matrix theory of absorption line shape of molecular aggregate
    • DOI 10.1063/1.2046668, 124705
    • M. N. Yang, J. Chem. Phys. JCPSA6 0021-9606 123, 124705 (2005). 10.1063/1.2046668 (Pubitemid 41407802)
    • (2005) Journal of Chemical Physics , vol.123 , Issue.12 , pp. 1-6
    • Yang, M.1
  • 31
    • 67649090416 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.3155214
    • A. Ishizaki and G. R. Fleming, J. Chem. Phys. JCPSA6 0021-9606 130, 234110 (2009). 10.1063/1.3155214
    • (2009) J. Chem. Phys. , vol.130 , pp. 234110
    • Ishizaki, A.1    Fleming, G.R.2
  • 32
    • 67649132804 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.3155372
    • A. Ishizaki and G. R. Fleming, J. Chem. Phys. JCPSA6 0021-9606 130, 234111 (2009). 10.1063/1.3155372
    • (2009) J. Chem. Phys. , vol.130 , pp. 234111
    • Ishizaki, A.1    Fleming, G.R.2
  • 37
    • 72049087255 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.3247899
    • S. Jang, J. Chem. Phys. JCPSA6 0021-9606 131, 164101 (2009). 10.1063/1.3247899
    • (2009) J. Chem. Phys. , vol.131 , pp. 164101
    • Jang, S.1
  • 39
    • 0342657916 scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.437910
    • H. -D. Meyer and W. H. Miller, J. Chem. Phys. JCPSA6 0021-9606 70, 3214 (1979). 10.1063/1.437910
    • (1979) J. Chem. Phys. , vol.70 , pp. 3214
    • Meyer, H.-D.1    Miller, W.H.2
  • 40
    • 0003081433 scopus 로고    scopus 로고
    • PRLTAO 0031-9007,. 10.1103/PhysRevLett.78.578
    • G. Stock and M. Thoss, Phys. Rev. Lett. PRLTAO 0031-9007 78, 578 (1997). 10.1103/PhysRevLett.78.578
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 578
    • Stock, G.1    Thoss, M.2
  • 41
    • 0041361416 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.473624
    • X. Sun and W. H. Miller, J. Chem. Phys. JCPSA6 0021-9606 106, 6346 (1997). 10.1063/1.473624
    • (1997) J. Chem. Phys. , vol.106 , pp. 6346
    • Sun, X.1    Miller, W.H.2
  • 42
    • 0002738928 scopus 로고    scopus 로고
    • PLRAAN 1050-2947,. 10.1103/PhysRevA.59.64
    • M. Thoss and G. Stock, Phys. Rev. A PLRAAN 1050-2947 59, 64 (1999). 10.1103/PhysRevA.59.64
    • (1999) Phys. Rev. A , vol.59 , pp. 64
    • Thoss, M.1    Stock, G.2
  • 43
  • 44
    • 21444433787 scopus 로고    scopus 로고
    • LAND-map, a linearized approach to nonadiabatic dynamics using the mapping formalism
    • DOI 10.1063/1.1896948, 194102
    • S. Bonella and D. F. Coker, J. Chem. Phys. JCPSA6 0021-9606 122, 194102 (2005). 10.1063/1.1896948 (Pubitemid 40914299)
    • (2005) Journal of Chemical Physics , vol.122 , Issue.19 , pp. 1-13
    • Bonella, S.1    Coker, D.F.2
  • 45
    • 0037426148 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.1542883
    • S. Bonella and D. F. Coker, J. Chem. Phys. JCPSA6 0021-9606 118, 4370 (2003). 10.1063/1.1542883
    • (2003) J. Chem. Phys. , vol.118 , pp. 4370
    • Bonella, S.1    Coker, D.F.2
  • 46
    • 0035826665 scopus 로고    scopus 로고
    • A semiclassical limit for the mapping Hamiltonian approach to electronically nonadiabatic dynamics
    • DOI 10.1063/1.1366331
    • S. Bonella and D. F. Coker, J. Chem. Phys. JCPSA6 0021-9606 114, 7778 (2001). 10.1063/1.1366331 (Pubitemid 32486691)
    • (2001) Journal of Chemical Physics , vol.114 , Issue.18 , pp. 7778-7789
    • Bonella, S.1    Coker, D.F.2
  • 47
    • 77953290556 scopus 로고    scopus 로고
    • CMPHC2 0301-0104,. 10.1016/j.chemphys.2010.02.021
    • P. Huo, S. Bonella, L. Chen, and D. F. Coker, Chem. Phys. CMPHC2 0301-0104 370, 87 (2010). 10.1016/j.chemphys.2010.02.021
    • (2010) Chem. Phys. , vol.370 , pp. 87
    • Huo, P.1    Bonella, S.2    Chen, L.3    Coker, D.F.4
  • 48
    • 0032398445 scopus 로고    scopus 로고
    • Quantum time correlation functions and classical coherence
    • DOI 10.1016/S0301-0104(98)00027-5
    • R. Hernandez and G. A. Voth, Chem. Phys. CMPHC2 0301-0104 233, 243 (1998). 10.1016/S0301-0104(98)00027-5 (Pubitemid 128111762)
    • (1998) Chemical Physics , vol.233 , Issue.2-3 , pp. 243-255
    • Hernandez, R.1    Voth, G.A.2
  • 50
    • 0242609133 scopus 로고    scopus 로고
    • JPCAFH 1089-5639,. 10.1021/jp030497+
    • Q. Shi and E. Geva, J. Phys. Chem. A JPCAFH 1089-5639 107, 9059 (2003). 10.1021/jp030497+
    • (2003) J. Phys. Chem. A , vol.107 , pp. 9059
    • Shi, Q.1    Geva, E.2
  • 51
    • 0032094712 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.476447
    • H. Wang, X. Sun, and W. H. Miller, J. Chem. Phys. JCPSA6 0021-9606 108, 9726 (1998). 10.1063/1.476447
    • (1998) J. Chem. Phys. , vol.108 , pp. 9726
    • Wang, H.1    Sun, X.2    Miller, W.H.3
  • 52
    • 0001141267 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.479449
    • M. F. Herman and D. F. Coker, J. Chem. Phys. JCPSA6 0021-9606 111, 1801 (1999). 10.1063/1.479449
    • (1999) J. Chem. Phys. , vol.111 , pp. 1801
    • Herman, M.F.1    Coker, D.F.2
  • 53
    • 46149100304 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.2944270
    • Z. Ma and D. F. Coker, J. Chem. Phys. JCPSA6 0021-9606 128, 244108 (2008). 10.1063/1.2944270
    • (2008) J. Chem. Phys. , vol.128 , pp. 244108
    • Ma, Z.1    Coker, D.F.2
  • 55
    • 33749521844 scopus 로고    scopus 로고
    • How proteins trigger excitation energy transfer in the FMO complex of green sulfur bacteria
    • DOI 10.1529/biophysj.105.079483
    • J. Adolphs and T. Renger, Biophys. J. BIOJAU 0006-3495 91, 2778 (2006). 10.1529/biophysj.105.079483 (Pubitemid 44526469)
    • (2006) Biophysical Journal , vol.91 , Issue.8 , pp. 2778-2797
    • Adolphs, J.1    Renger, T.2
  • 58
    • 11744331123 scopus 로고    scopus 로고
    • JPCAFH 1089-5639,. 10.1021/jp9800665
    • T. Renger and V. May, J. Phys. Chem. A JPCAFH 1089-5639 102, 4381 (1998). 10.1021/jp9800665
    • (1998) J. Phys. Chem. A , vol.102 , pp. 4381
    • Renger, T.1    May, V.2
  • 61
    • 28144434370 scopus 로고    scopus 로고
    • Markovian approximation in the relaxation of open quantum systems
    • DOI 10.1021/jp051303o
    • Y. C. Cheng and R. J. Silbey, J. Phys. Chem. B JPCBFK 1089-5647 109, 21399 (2005). 10.1021/jp051303o (Pubitemid 41698314)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.45 , pp. 21399-21405
    • Cheng, Y.C.1    Silbey, R.J.2
  • 62
    • 17544386010 scopus 로고    scopus 로고
    • JPCBFK 1089-5647,. 10.1021/jp9847540
    • N. Makri, J. Phys. Chem. B JPCBFK 1089-5647 103, 2823 (1999). 10.1021/jp9847540
    • (1999) J. Phys. Chem. B , vol.103 , pp. 2823
    • Makri, N.1
  • 64
    • 0037040034 scopus 로고    scopus 로고
    • Surface-hopping dynamics of a spin-boson system
    • DOI 10.1063/1.1433502
    • D. Mac Kernan, G. Ciccotti, and R. Kapral, J. Chem. Phys. JCPSA6 0021-9606 116, 2346 (2002). 10.1063/1.1433502 (Pubitemid 34167969)
    • (2002) Journal of Chemical Physics , vol.116 , Issue.6 , pp. 2346-2353
    • Kernan, D.M.1    Ciccotti, G.2    Kapral, R.3
  • 65
    • 0001255362 scopus 로고    scopus 로고
    • JCPSA6 0021-9606,. 10.1063/1.474312
    • O. V. Prezhdo and P. J. Rossky, J. Chem. Phys. JCPSA6 0021-9606 107, 5863 (1997). 10.1063/1.474312
    • (1997) J. Chem. Phys. , vol.107 , pp. 5863
    • Prezhdo, O.V.1    Rossky, P.J.2
  • 66
    • 0000391095 scopus 로고    scopus 로고
    • PRLTAO 0031-9007,. 10.1103/PhysRevLett.81.5294
    • O. V. Prezhdo and P. J. Rossky, Phys. Rev. Lett. PRLTAO 0031-9007 81, 5294 (1998). 10.1103/PhysRevLett.81.5294
    • (1998) Phys. Rev. Lett. , vol.81 , pp. 5294
    • Prezhdo, O.V.1    Rossky, P.J.2
  • 69
    • 17444403946 scopus 로고    scopus 로고
    • An adiabatic linearized path integral approach for quantum time correlation functions: Electronic transport in metal-molten salt solutions
    • DOI 10.1021/jp045208b
    • M. S. Causo, G. Ciccotti, D. Montemayor, S. Bonella, and D. F. Coker, J. Phys. Chem. B JPCBFK 1089-5647 109, 6855 (2005). 10.1021/jp045208b (Pubitemid 40538455)
    • (2005) Journal of Physical Chemistry B , vol.109 , Issue.14 , pp. 6855-6865
    • Causo, M.S.1    Ciccotti, G.2    Montemayor, D.3    Bonella, S.4    Coker, D.F.5
  • 70
    • 78449282944 scopus 로고    scopus 로고
    • in, Lectures in Chemical Physics Vol., edited by D. Micha and I. Burghardt (Springer, Berlin)
    • S. Bonella and D. F. Coker, in Quantum Dynamics of Complex Molecular Systems, Lectures in Chemical Physics Vol. 83, edited by, D. Micha, and, I. Burghardt, (Springer, Berlin, 2006), p. 321.
    • (2006) Quantum Dynamics of Complex Molecular Systems , vol.83 , pp. 321
    • Bonella, S.1    Coker, D.F.2


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