Multichromophoric förster resonance energy transfer from B800 to B850 in the Light harvesting complex 2: Evidence for subtle energetic optimization by purple bacteria

Journal of Physical Chemistry B

Volumn 111, Issue 24, 2007, Pages 6807-6814

  Jang, Seogjoo ^a   Newton, Marshall D ^b   Silbey, Robert J ^c  

^a CITY UNIVERSITY OF NEW YORK   (United States)

^b BROOKHAVEN NATIONAL LABORATORY   (United States)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CHROMOPHORES; COMPLEXATION; HAMILTONIANS; OPTIMIZATION; THERMOANALYSIS;

ELECTRONIC COUPLING; LOW-TEMPERATURE EXPERIMENTAL RATE; OPTICAL DIELECTRIC CONSTANTS;

ENERGY TRANSFER;

B800 850 LIGHT HARVESTING COMPLEX, BACTERIA; B800-850 LIGHT-HARVESTING COMPLEX, BACTERIA; BACTERIAL PROTEIN; BACTERIOCHLOROPHYLL; UNCLASSIFIED DRUG;

ARTICLE; CHEMICAL MODEL; CHEMISTRY; ENERGY TRANSFER; FLUORESCENCE RESONANCE ENERGY TRANSFER; LIGHT HARVESTING SYSTEM; METABOLISM; METHODOLOGY; PROTEOBACTERIA;

BACTERIAL PROTEINS; BACTERIOCHLOROPHYLLS; ENERGY TRANSFER; FLUORESCENCE RESONANCE ENERGY TRANSFER; LIGHT-HARVESTING PROTEIN COMPLEXES; MODELS, CHEMICAL; PROTEOBACTERIA;

EID: 34547362098     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp0701111     Document Type: Article

References (67)

1. McDermott, G.; Prince, S. M.; Freer, A. A.; Hawthornthwaite-Lawless, A. M.; Paplz, M. Z.; Cogdell, R. J.; Issacs, N. W. Nature 1995, 374, 517.
2. Koepke, J.; Hu, X.; Muenke, C.; Schulten, K.; Michel, H. Structure 1996, 4, 581.
3. Papiz, M. Z.; Prince, S. M.; Howard, T.; Cogdell, R. J.; Isaacs, N. W. J. Mol. Biol. 1995, 46, 701.
4. Roszak, A. W.; Howard, T. D.; Southall, J.; Gardiner, A. T.; Law, C. J.; Isaacs, N. W.; Cogdell, R. J. Science 2003, 302, 1969.
5. Zouni, A.; Witt, H. T.; Kern, J.; Fromme, P.; Krauss, N.; Saenger, W.; Orth, P. Nature 2001, 409, 739.
6. Jordan, P.; Fromme, P.; Witt, H. T.; Klukas, O.; Saenger, W.; Krauss, N. Nature 2001, 411, 909.
7. Kamiya, N.; Shen, J.-R. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 98.
8. Ben-Shem, A; Frolow, F.; Nelson, N. Nature 2003, 426, 630.
9. Sundstrom, V.; Pullerits, T.; van Grondelle, R, J. Phys. Chem. B 1999, 103, 2327.
10. Koolhaas, M. H. C.; van der Zwan, G.; van Grondelle, R. J. Phys. Chem. B 2000, 104, 4489.
11. Wu, H.-M.; Reddy, N. R. S.; Small, G. J. J. Phys. Chem. B 1997, 101, 651.
12. Wu, H.-M.; Ratsep, M.; Jankowiak, R.; Cogdell. R. J.; Small, G. J. J. Phys. Chem. B 1997, 101, 7641.
13. Wu, H.-M.; Small, G. J. J. Phys. Chem. B 1998, 102, 888.
14. Matsuzaki, S.; Zazubovich, V.; Frase, N. J.; Cogdell, R. J.; Small, G. J. J. Phys. Chem. B 2001, 105, 7049.
15. Freiberg, A.; Jackson, J. A.; Lin, S.; Woodbury, N. W. J. Phys. Chem. A 1998, 102, 4372.
16. Freiberg, A.; Timpmann, K.; Ruus, R.; Woodbury, N. W. J. Phys. Chem. B 1999, 103, 10032.
17. Timpmann, K.; Woodbury, N. W.; Freiberg, A. J. Phys. Chem. B 2000, 104, 9769.
18. Tietz, C.; Chekhlov, O.; Dräbenstedt, A.; Schuster. J.; Wrachtrup, J. J. Phys. Chem. B 1999, 103, 6328.
19. Hofmann, C.; Michel. H.: van Heel. M.: Köhler. J. Phys. Rev. Lett. 2005.94, 195501.
20. Groot, M. L.; Breton, J.; van Wilderen, J. G. W.; Dekker, J. P.; van Grondelle, R. J. Phys. Chem. B 2004, 108, 8001.
21. Monshouwer, R.; Abrahamsson, M.: van Mourik, F.; van. Grondelle, R. J. Phys. Chem. B 1997, 101, 7241.
22. Pullerits, T.; Hess, S.: Herek, J. L.; Sundström, V. J. Phys. Chem. B 1997, 101, 10560.
23. Herek, J. L.; Fraser, N. J.; Pullerits, T.; Martinsson, P.; Polivka, T.; Scheer, H.; Cogdell, R. J.; Sundström, V. Biophys. J. 2000, 78, 2590.
24. Creemers, T. M. H.; De Caro, C. A.; Visschers, R. W.; van Grondelle, R.; Völker, S. J. Phys. Chem. B 1999, 103, 9770.
25. Timpmann, K.; Rätsep, M.; Hunter. C. N.; Freiberg, A. J. Phys. Chem. B 2004, 108, 10581.
26. Urbonien, V.; Vrublevskaja, O.; Gall. A.; Trinkunas, G.; Robert, B.; Valkunas, L. Photosynt. Res. 2005, 86, 49.
27. Hu, X.; Ritz, T.; Damjanovic, A.; Autenrieth, F.; Schulten, K. Quart. Rev. Blophys. 2002, 35, 1.
28. Mukai, K.; Abe, S.; Sumi, H. J. Phys. Chem. B 1999, 103, 6096.
29. Krueger, B. P.; Scholes, G. D.; Fleming, G. R. J. Phys. Chem. B 1998, 102, 5378.
30. Scholes, G. D.; Fleming, G. R. J. Phys. Chem. B 2000, 104, 1854.
31. Jang, S.; Dempster, S. E.; Silbey, R. J. J. Phys. Chem. B 2001, 105, 6655.
32. Jang, S.; Silbey, R. J. J. Chem. Phys. 2003, 118, 9312.
33. Jang, S.; Silbey, R. J. J. Chem. Phys. 2003, 118, 9324.
34. Jang, S.; Newton, M. D.; Silbey, R. J. Phys. Rev. Lett. 2004, 92, 218301.
35. Ray, J.; Makri, N. J. Phys. Chem. A 1999, 103, 9417.
36. Herman, P.; Barvik, I. J. Phys. Chem. B 1999, 103, 10892.
37. Ritz, T.; Park, S.; Schulten, K. J. Phys. Chem. B 2001, 105, 8259.
38. Linnanto, J.; Korppi-Tommola, J. E. I.; Helenius, V. M. J. Phys. Chem. B 1999, 105, 8739.
39. Linnanto. J.; Korppi-Tommola, J. E. I. Phys. Chem. Chem. Phys. 2002, 4, 3453.
40. Linnanto, J.; Korppi-Tommola, J. J. Phys. Chem., 2004, 108, 5872.
41. Yang, M.; Agarwal, R.: Fleming, G. R. J. Photochem. Photobiol., A 2001, 142, 107.
42. Agarwal, R.; Yang, M.; Xu, Q.-H.; Fleming, G. R. J. Phys. Chem. B 2001, 105, 1887.
43. Agarwal, R.; Rizvi, A. H.; Prall, B. S.; Olsen, J. D.; Hunter, C. N.; Fleming, G. R. J. Phys. Chem. A 2002, 106, 7573.
44. Cheng, Y. C.; Silbey, R. J. Phys. Rev. Lett. 2006, 96, 028103.
45. Janosi, W.; Kosztin, I.; Damjanovic, A. J. Chem. Phys. 2006, 125, 014903.
46. Sener, M. K.; Park, S.; Lu, D.; Damjanović, A.; Ritz, T.; Fromme, P.; Schulten, K. J. Chem. Phys. 2004, 120, 11183.
47. Brüggemann, B.; Sznee, K.; Novoderezhkin, V.; van Grondelle, R.; May, V. J. Phys. Chem. B 2004, 108, 13536.
48. Kimura, A.; Kakitani, T. J. Phys. Chem. B 2003, 107, 7932.
49. Fleming, G. R.; Scholes, G. D. Nature 2004, 431, 256.
50. Jimenez, R.; Dikshit, S.; Bradforth, S. E.; Fleming, G. R. J. Phys. Chem. 1996, 100, 6825.
51. Förster, Th. Discuss. Faraday Soc. 1953, 27, 7.
52. Förster, Th. In Modern Quantum Chemistry, Part III; Sinanoglu, O., Ed., Academic Press, New York, 1965.
53. Agranovich, V. M.; Galanin, M. D. Electronic excitation energy transfer in condensed matter; North-Holland: Amsterdam, 1982.
54. Andrews, D. L., Demidov, A. A., Eds. Resonance Energy Transfer, John Wiley & Sons: Chichester, 1999.
55. Scholes, G. D. Annu. Rev. Phys. Chem. 2003, 54, 57.
56. Sumi, H. J. Phys. Chem. B 1999, 103, 252.
57. g.
58. Renger, T.; Marcus, R. A. J. Chem. Phys. 2002, 116, 9997.
59. Jang, S.; Cao, J.; Silbey, R. J. J. Phys. Chem. B 2002, 106, 8313.
60. Jang, S.; Jung, Y. J.; Silbey, R. J. Chem. Phys. 2002, 275, 319.
61. Jang, S.; Silbey, R. J. In preparation.
62. -1 is used for the integration of the FRET and MC-FRET rate expressions.
63. g. Once the emission lineshape is stored, the line shapes for other values of the energy can be obtained by shifting the reference value only.
64. There is a typo in the unit definition related to scaling factor in the Figure 2 caption of this paper, ℏ = 1 should read as h = 1.
65. Scherz, A.; Parson, W. W. Biochim. Biophys. Acta 1984, 766, 666.
66. Kimura and Kakitani in ref 48 also used different spectral densities with longer tails and bumps in the high frequency phonon modes, which seems necessary for the understanding of the experimental rates for mutuants with large energy bias (data points e and f in their Figure 1). This shows that the use of more accurate spectral densities including high frequency phonon modes may be necessary for satisfactory theoretical description of all the experimental data in ref 23 even if we include the effect of back transfer reactions.
67. Didraga, C.; Malyshev, V. A.; Knoester, J. J. Phys. Chem. B 2006, 110, 18818.