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Volumn 13, Issue SUPPL1, 2013, Pages

Finding type 2 diabetes causal single nucleotide polymorphism combinations and functional modules from genome-wide association data

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; COMPUTER NETWORK; DATA BASE; GENETIC ASSOCIATION; GENETICS; GENOTYPING TECHNIQUE; HUMAN; LABORATORY DIAGNOSIS; NON INSULIN DEPENDENT DIABETES MELLITUS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84875935023     PISSN: None     EISSN: 14726947     Source Type: Journal    
DOI: 10.1186/1472-6947-13-S1-S3     Document Type: Article
Times cited : (3)

References (51)
  • 2
    • 77954133026 scopus 로고    scopus 로고
    • Estimation of effect size distribution from genome-wide association studies and implications for future discoveries
    • 10.1038/ng.610 20562874
    • Estimation of effect size distribution from genome-wide association studies and implications for future discoveries. Park JH, Wacholder S, Gail MH, Peters U, Jacobs KB, Chanock SJ, Chatterjee N, Nature genetics 2010 42 7 570 575 10.1038/ng.610 20562874
    • (2010) Nature Genetics , vol.42 , Issue.7 , pp. 570-575
    • Park, J.H.1    Wacholder, S.2    Gail, M.H.3    Peters, U.4    Jacobs, K.B.5    Chanock, S.J.6    Chatterjee, N.7
  • 3
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • 10.1038/nature05911 17554300
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. WTCCC Consortium, Nature 2007 447 7145 661 678 10.1038/nature05911 17554300
    • (2007) Nature , vol.447 , Issue.7145 , pp. 661-678
    • Consortium, W.1
  • 4
    • 62549115747 scopus 로고    scopus 로고
    • Genome-wide association analysis by lasso penalized logistic regression
    • 10.1093/bioinformatics/btp041 19176549
    • Genome-wide association analysis by lasso penalized logistic regression. Wu TT, Chen YF, Hastie T, Sobel E, Lange K, Bioinformatics 2009 25 6 714 721 10.1093/bioinformatics/btp041 19176549
    • (2009) Bioinformatics , vol.25 , Issue.6 , pp. 714-721
    • Wu, T.T.1    Chen, Y.F.2    Hastie, T.3    Sobel, E.4    Lange, K.5
  • 5
    • 48249096806 scopus 로고    scopus 로고
    • Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies
    • 10.1371/journal.pgen.1000130 18654633
    • Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies. Hoggart CJ, Whittaker JC, De Iorio M, Balding DJ, PLoS Genet 2008 4 7 1000130 10.1371/journal.pgen.1000130 18654633
    • (2008) PLoS Genet , vol.4 , Issue.7 , pp. 51000130
    • Hoggart, C.J.1    Whittaker, J.C.2    De Iorio, M.3    Balding, D.J.4
  • 6
    • 70350664664 scopus 로고    scopus 로고
    • Multiple testing in genome-wide association studies via hidden Markov models
    • 10.1093/bioinformatics/btp476 19654115
    • Multiple testing in genome-wide association studies via hidden Markov models. Wei Z, Sun W, Wang K, Hakonarson H, Bioinformatics 2009 25 21 2802 2808 10.1093/bioinformatics/btp476 19654115
    • (2009) Bioinformatics , vol.25 , Issue.21 , pp. 2802-2808
    • Wei, Z.1    Sun, W.2    Wang, K.3    Hakonarson, H.4
  • 7
    • 77951097424 scopus 로고    scopus 로고
    • Identification of type 2 diabetes-associated combination of SNPs using support vector machine
    • 20416077
    • Identification of type 2 diabetes-associated combination of SNPs using support vector machine. Ban HJ, Heo JY, Oh KS, Park KJ, BMC genetics 2010 11 26 20416077
    • (2010) BMC Genetics , vol.11 , pp. 26
    • Ban, H.J.1    Heo, J.Y.2    Oh, K.S.3    Park, K.J.4
  • 8
    • 79955984463 scopus 로고    scopus 로고
    • Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest
    • 10.1093/nar/gkr064 21317188
    • Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest. Roshan U, Chikkagoudar S, Wei Z, Wang K, Hakonarson H, Nucleic acids research 2011 39 9 62 10.1093/nar/gkr064 21317188
    • (2011) Nucleic Acids Research , vol.39 , Issue.9 , pp. 562
    • Roshan, U.1    Chikkagoudar, S.2    Wei, Z.3    Wang, K.4    Hakonarson, H.5
  • 9
    • 71249102733 scopus 로고    scopus 로고
    • Detecting gene-by-smoking interactions in a genome-wide association study of early-onset coronary heart disease using random forests
    • 10.1186/1753-6561-3-s7-s88 20018084
    • Detecting gene-by-smoking interactions in a genome-wide association study of early-onset coronary heart disease using random forests. Maenner MJ, Denlinger LC, Langton A, Meyers KJ, Engelman CD, Skinner HG, BMC Proceedings 2009 3 Suppl 7 88 10.1186/1753-6561-3-s7-s88 20018084
    • (2009) BMC Proceedings , vol.3 , Issue.SUPPL. 7 , pp. 1988
    • Maenner, M.J.1    Denlinger, L.C.2    Langton, A.3    Meyers, K.J.4    Engelman, C.D.5    Skinner, H.G.6
  • 10
    • 71249133809 scopus 로고    scopus 로고
    • Detecting significant single-nucleotide polymorphisms in a rheumatoid arthritis study using random forests
    • 10.1186/1753-6561-3-s7-s69 20018063
    • Detecting significant single-nucleotide polymorphisms in a rheumatoid arthritis study using random forests. Wang M, Chen X, Zhang M, Zhu W, Cho K, Zhang H, BMC Proceedings 2009 3 Suppl 7 69 10.1186/1753-6561-3-s7-s69 20018063
    • (2009) BMC Proceedings , vol.3 , Issue.SUPPL. 7 , pp. 1969
    • Wang, M.1    Chen, X.2    Zhang, M.3    Zhu, W.4    Cho, K.5    Zhang, H.6
  • 11
    • 79955562075 scopus 로고    scopus 로고
    • A genome-wide screen of gene-gene interactions for rheumatoid arthritis susceptibility
    • 10.1007/s00439-010-0943-z 21210282
    • A genome-wide screen of gene-gene interactions for rheumatoid arthritis susceptibility. Liu C, Ackerman HH, Carulli JP, Human genetics 2011 129 5 473 485 10.1007/s00439-010-0943-z 21210282
    • (2011) Human Genetics , vol.129 , Issue.5 , pp. 473-485
    • Liu, C.1    Ackerman, H.H.2    Carulli, J.P.3
  • 12
    • 83155178509 scopus 로고    scopus 로고
    • SNPInterForest: A new method for detecting epistatic interactions
    • 10.1186/1471-2105-12-469 22151604
    • SNPInterForest: a new method for detecting epistatic interactions. Yoshida M, Koike A, BMC bioinformatics 2011 12 469 10.1186/1471-2105-12-469 22151604
    • (2011) BMC Bioinformatics , vol.12 , pp. 469
    • Yoshida, M.1    Koike, A.2
  • 13
    • 80155172601 scopus 로고    scopus 로고
    • Power of Data Mining Methods to Detect Genetic Associations and Interactions
    • 10.1159/000330579 21934324
    • Power of Data Mining Methods to Detect Genetic Associations and Interactions. Molinaro AM, Carriero N, Bjornson R, Hartge P, Rothman N, Chatterjee N, Human Heredity 2011 72 2 85 97 10.1159/000330579 21934324
    • (2011) Human Heredity , vol.72 , Issue.2 , pp. 85-97
    • Molinaro, A.M.1    Carriero, N.2    Bjornson, R.3    Hartge, P.4    Rothman, N.5    Chatterjee, N.6
  • 14
    • 25444453244 scopus 로고    scopus 로고
    • Screening large-scale association study data: Exploiting interactions using random forests
    • 10.1186/1471-2156-5-32 15588316
    • Screening large-scale association study data: exploiting interactions using random forests. Lunetta K, Hayward LB, Segal J, Van Eerdewegh P, BMC genetics 2004 5 1 32 10.1186/1471-2156-5-32 15588316
    • (2004) BMC Genetics , vol.5 , Issue.1 , pp. 32
    • Lunetta, K.1    Hayward, L.B.2    Segal, J.3    Van Eerdewegh, P.4
  • 16
    • 80053927394 scopus 로고    scopus 로고
    • Genetics of type 2 diabetes: The GWAS era and future perspectives
    • 10.1507/endocrj.EJ11-0113 21778616
    • Genetics of type 2 diabetes: the GWAS era and future perspectives. Imamura M, Maeda S, Endocrine journal 2011 58 9 723 739 10.1507/endocrj.EJ11- 0113 21778616
    • (2011) Endocrine Journal , vol.58 , Issue.9 , pp. 723-739
    • Imamura, M.1    Maeda, S.2
  • 17
    • 79955614502 scopus 로고    scopus 로고
    • Genetics of type 2 diabetes: Pathophysiologic and clinical relevance
    • 10.1111/j.1365-2362.2010.02454.x 21198561
    • Genetics of type 2 diabetes: pathophysiologic and clinical relevance. Herder C, Roden M, European journal of clinical investigation 2011 41 6 679 692 10.1111/j.1365-2362.2010.02454.x 21198561
    • (2011) European Journal of Clinical Investigation , vol.41 , Issue.6 , pp. 679-692
    • Herder, C.1    Roden, M.2
  • 18
    • 82755175640 scopus 로고    scopus 로고
    • Genetic risk prediction in complex disease
    • 10.1093/hmg/ddr378 21873261
    • Genetic risk prediction in complex disease. Jostins L, Barrett JC, Human molecular genetics 2011 20 R2 182 188 10.1093/hmg/ddr378 21873261
    • (2011) Human Molecular Genetics , vol.20 , Issue.R2 , pp. 18182-18188
    • Jostins, L.1    Barrett, J.C.2
  • 19
    • 84870546346 scopus 로고    scopus 로고
    • Detecting type 2 diabetes causal single nucleotide polymorphism combinations from a genome-wide association study dataset with optimal filtration
    • New York: ACM 10.1145/2390068.2390070
    • Detecting type 2 diabetes causal single nucleotide polymorphism combinations from a genome-wide association study dataset with optimal filtration. Kang C, Yu H, Yi G-S, Proceedings of the ACM Sixth International Workshop on Data and Text Mining in Biomedical Informatics New York: ACM 2012 1 8 10.1145/2390068.2390070
    • (2012) Proceedings of the ACM Sixth International Workshop on Data and Text Mining in Biomedical Informatics , pp. 1-8
    • Kang, C.1    Yu, H.2    Yi, G.-S.3
  • 21
    • 30644464444 scopus 로고    scopus 로고
    • Gene selection and classification of microarray data using random forest
    • 10.1186/1471-2105-7-3 16398926
    • Gene selection and classification of microarray data using random forest. Diaz-Uriarte R, Alvarez de Andres S, BMC bioinformatics 2006 7 3 10.1186/1471-2105-7-3 16398926
    • (2006) BMC Bioinformatics , vol.7 , pp. 3
    • Diaz-Uriarte, R.1    Alvarez De Andres, S.2
  • 22
    • 84255194463 scopus 로고    scopus 로고
    • Gene selection and classification for cancer microarray data based on machine learning and similarity measures
    • 10.1186/1471-2164-12-S5-S1 22369383
    • Gene selection and classification for cancer microarray data based on machine learning and similarity measures. Liu Q, Sung A, Chen Z, Liu J, Chen L, Qiao M, Wang Z, Huang X, Deng Y, BMC Genomics 2011 12 Suppl 5 1 10.1186/1471-2164-12-S5-S1 22369383
    • (2011) BMC Genomics , vol.12 , Issue.SUPPL. 5 , pp. 191
    • Liu, Q.1    Sung, A.2    Chen, Z.3    Liu, J.4    Chen, L.5    Qiao, M.6    Wang, Z.7    Huang, X.8    Deng, Y.9
  • 23
    • 0032165640 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Man
    • 10.1097/00000542-199809000-00060 9743436
    • Online Mendelian Inheritance in Man. Oyston J, Anesthesiology 1998 89 3 811 812 10.1097/00000542-199809000-00060 9743436
    • (1998) Anesthesiology , vol.89 , Issue.3 , pp. 811-812
    • Oyston, J.1
  • 24
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • 10.1093/nar/28.1.27 10592173
    • KEGG: kyoto encyclopedia of genes and genomes. Kanehisa M, Goto S, Nucleic acids research 2000 28 1 27 30 10.1093/nar/28.1.27 10592173
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 25
    • 2442604715 scopus 로고    scopus 로고
    • The genetic association database
    • 10.1038/ng0504-431 15118671
    • The genetic association database. Becker KG, Barnes KC, Bright TJ, Wang SA, Nature genetics 2004 36 5 431 432 10.1038/ng0504-431 15118671
    • (2004) Nature Genetics , vol.36 , Issue.5 , pp. 431-432
    • Becker, K.G.1    Barnes, K.C.2    Bright, T.J.3    Wang, S.A.4
  • 28
    • 79959735144 scopus 로고    scopus 로고
    • Gene set analysis of genome-wide association studies: Methodological issues and perspectives
    • 21565265
    • Gene set analysis of genome-wide association studies: methodological issues and perspectives. Wang L, Jia P, Wolfinger RD, Chen X, Zhao Z, Genomics 2011 98 1 1 8 21565265
    • (2011) Genomics , vol.98 , Issue.1 , pp. 1-8
    • Wang, L.1    Jia, P.2    Wolfinger, R.D.3    Chen, X.4    Zhao, Z.5
  • 35
    • 67849118790 scopus 로고    scopus 로고
    • COFECO: Composite function annotation enriched by protein complex data
    • 10.1093/nar/gkp331 19429688
    • COFECO: composite function annotation enriched by protein complex data. Sun CH, Kim MS, Han Y, Yi GS, Nucleic acids research 2009 37 Web Server 350 355 10.1093/nar/gkp331 19429688
    • (2009) Nucleic Acids Research , vol.37 , Issue.WEB SERVER , pp. 23350-23355
    • Sun, C.H.1    Kim, M.S.2    Han, Y.3    Yi, G.S.4
  • 38
    • 3142687604 scopus 로고    scopus 로고
    • PINdb: A database of nuclear protein complexes from human and yeast
    • 10.1093/bioinformatics/bth114 15087322
    • PINdb: a database of nuclear protein complexes from human and yeast. Luc PV, Tempst P, Bioinformatics 2004 20 9 1413 1415 10.1093/bioinformatics/bth114 15087322
    • (2004) Bioinformatics , vol.20 , Issue.9 , pp. 1413-1415
    • Luc, P.V.1    Tempst, P.2
  • 40
  • 41
    • 78651259030 scopus 로고    scopus 로고
    • Pathway-based analysis using reduced gene subsets in genome-wide association studies
    • 10.1186/1471-2105-12-17 21226955
    • Pathway-based analysis using reduced gene subsets in genome-wide association studies. Zhao J, Gupta S, Seielstad M, Liu J, Thalamuthu A, BMC bioinformatics 2011 12 17 10.1186/1471-2105-12-17 21226955
    • (2011) BMC Bioinformatics , vol.12 , pp. 17
    • Zhao, J.1    Gupta, S.2    Seielstad, M.3    Liu, J.4    Thalamuthu, A.5
  • 42
    • 78650924382 scopus 로고    scopus 로고
    • A common variant in TFB1M is associated with reduced insulin secretion and increased future risk of type 2 diabetes
    • 10.1016/j.cmet.2010.12.007 21195351
    • A common variant in TFB1M is associated with reduced insulin secretion and increased future risk of type 2 diabetes. Koeck T, Olsson AH, Nitert MD, Sharoyko VV, Ladenvall C, Kotova O, Reiling E, Ronn T, Parikh H, Taneera J, et al. Cell metabolism 2011 13 1 80 91 10.1016/j.cmet.2010.12.007 21195351
    • (2011) Cell Metabolism , vol.13 , Issue.1 , pp. 80-91
    • Koeck, T.1    Olsson, A.H.2    Nitert, M.D.3    Sharoyko, V.V.4    Ladenvall, C.5    Kotova, O.6    Reiling, E.7    Ronn, T.8    Parikh, H.9    Taneera, J.10
  • 44
    • 71549166982 scopus 로고    scopus 로고
    • Apoptotic, regenerative, and immune-related signaling in human islets from type 2 diabetes individuals
    • 10.1021/pr9006816 19852514
    • Apoptotic, regenerative, and immune-related signaling in human islets from type 2 diabetes individuals. Nyblom HK, Bugliani M, Fung E, Boggi U, Zubarev R, Marchetti P, Bergsten P, Journal of proteome research 2009 8 12 5650 5656 10.1021/pr9006816 19852514
    • (2009) Journal of Proteome Research , vol.8 , Issue.12 , pp. 5650-5656
    • Nyblom, H.K.1    Bugliani, M.2    Fung, E.3    Boggi, U.4    Zubarev, R.5    Marchetti, P.6    Bergsten, P.7
  • 45
    • 79955707557 scopus 로고    scopus 로고
    • Long-term diabetic complications may be ameliorated by targeting Rho kinase
    • 10.1002/dmrr.1182 21309060
    • Long-term diabetic complications may be ameliorated by targeting Rho kinase. Zhou H, Li Y, Diabetes/metabolism research and reviews 2011 27 4 318 330 10.1002/dmrr.1182 21309060
    • (2011) Diabetes/metabolism Research and Reviews , vol.27 , Issue.4 , pp. 318-330
    • Zhou, H.1    Li, Y.2
  • 46
    • 33750865703 scopus 로고    scopus 로고
    • STAT5 activity in pancreatic beta-cells influences the severity of diabetes in animal models of type 1 and 2 diabetes
    • 10.2337/db06-0244 17003334
    • STAT5 activity in pancreatic beta-cells influences the severity of diabetes in animal models of type 1 and 2 diabetes. Jackerott M, Moldrup A, Thams P, Galsgaard ED, Knudsen J, Lee YC, Nielsen JH, Diabetes 2006 55 10 2705 2712 10.2337/db06-0244 17003334
    • (2006) Diabetes , vol.55 , Issue.10 , pp. 2705-2712
    • Jackerott, M.1    Moldrup, A.2    Thams, P.3    Galsgaard, E.D.4    Knudsen, J.5    Lee, Y.C.6    Nielsen, J.H.7
  • 48
    • 80054017191 scopus 로고    scopus 로고
    • Impaired TGF-beta signaling and a defect in resolution of inflammation contribute to delayed wound healing in a female rat model of type 2 diabetes
    • 10.1039/c0mb00317d 21850315
    • Impaired TGF-beta signaling and a defect in resolution of inflammation contribute to delayed wound healing in a female rat model of type 2 diabetes. Al-Mulla F, Leibovich SJ, Francis IM, Bitar MS, Molecular bioSystems 2011 7 11 3006 3020 10.1039/c0mb00317d 21850315
    • (2011) Molecular BioSystems , vol.7 , Issue.11 , pp. 3006-3020
    • Al-Mulla, F.1    Leibovich, S.J.2    Francis, I.M.3    Bitar, M.S.4
  • 49
    • 66649104469 scopus 로고    scopus 로고
    • Interrogating type 2 diabetes genome-wide association data using a biological pathway-based approach
    • 10.2337/db08-1378 19252133
    • Interrogating type 2 diabetes genome-wide association data using a biological pathway-based approach. Perry JR, McCarthy MI, Hattersley AT, Zeggini E, Weedon MN, Frayling TM, Diabetes 2009 58 6 1463 1467 10.2337/db08-1378 19252133
    • (2009) Diabetes , vol.58 , Issue.6 , pp. 1463-1467
    • Perry, J.R.1    McCarthy, M.I.2    Hattersley, A.T.3    Zeggini, E.4    Weedon, M.N.5    Frayling, T.M.6


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