메뉴 건너뛰기




Volumn 16, Issue , 2013, Pages 290-297

Dynamics and molecular evolution of HIV-1 strains in Sicily among antiretroviral naïve patients

Author keywords

CRF; HAART na ve patients; HIV 1 subtypes; Molecular evolution; Non B subtypes

Indexed keywords

ANTIRETROVIRUS AGENT;

EID: 84875763118     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.02.012     Document Type: Article
Times cited : (4)

References (49)
  • 1
    • 77952567950 scopus 로고    scopus 로고
    • Human Immunodeficiency Virus (HIV) and migrant " risk environments" : the case of the Ethiopian and Eritrean immigrant community in the West Midlands of the UK
    • Barrett H.R., Mulugeta B. Human Immunodeficiency Virus (HIV) and migrant " risk environments" : the case of the Ethiopian and Eritrean immigrant community in the West Midlands of the UK. Psychol. Health Med. 2010, 15:357-369.
    • (2010) Psychol. Health Med. , vol.15 , pp. 357-369
    • Barrett, H.R.1    Mulugeta, B.2
  • 3
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: an agglomerative method for the construction of phylogenetic networks
    • Bryant D., Moulton V. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 2004, 21:255-265.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 6
    • 84864453108 scopus 로고    scopus 로고
    • JModelTest 2: more models, new heuristics and parallel computing
    • Darriba D., Taboada G.L., Doallo R., Posada D. JModelTest 2: more models, new heuristics and parallel computing. Nat. Meth. 2012, 9:772. 10.1038/nmeth.2109.
    • (2012) Nat. Meth. , vol.9 , pp. 772
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 9
    • 53149137082 scopus 로고    scopus 로고
    • New and old complex recombinant HIV-1 strains among patients with primary infection in 1996-2006 in France. The French ANRS CO06 primo cohort study
    • Frange P., Galimand J., Vidal N., Goujard C., Deveau C., Souala F., Peeters M., Meyer L., Rouzioux C., Chaix M.L. New and old complex recombinant HIV-1 strains among patients with primary infection in 1996-2006 in France. The French ANRS CO06 primo cohort study. Retrovirology 2008, 5:69.
    • (2008) Retrovirology , vol.5 , pp. 69
    • Frange, P.1    Galimand, J.2    Vidal, N.3    Goujard, C.4    Deveau, C.5    Souala, F.6    Peeters, M.7    Meyer, L.8    Rouzioux, C.9    Chaix, M.L.10
  • 10
    • 29744448144 scopus 로고    scopus 로고
    • HIV-1 subtypes: epidemiology and significance for HIV management
    • Geretti A.M. HIV-1 subtypes: epidemiology and significance for HIV management. Curr. Opin. Infect. Dis. 2006, 19:1-7.
    • (2006) Curr. Opin. Infect. Dis. , vol.19 , pp. 1-7
    • Geretti, A.M.1
  • 12
    • 84870765716 scopus 로고    scopus 로고
    • The increasing prevalence of HIV-1 subtype C in Southern Brazil and its dispersion through the continent
    • S0042-S6822, pii: S0042-6822(12)00441-2
    • Gräf T., Pinto A.R. The increasing prevalence of HIV-1 subtype C in Southern Brazil and its dispersion through the continent. Virology 2012, S0042-S6822(12):441-442. pii: S0042-6822(12)00441-2. 10.1016/j.virol.2012.08.048.
    • (2012) Virology , Issue.12 , pp. 441-442
    • Gräf, T.1    Pinto, A.R.2
  • 13
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 14
    • 84887504533 scopus 로고    scopus 로고
    • HIV non-B subtype distribution: emerging trends and risk factors for imported and local infections newly diagnosed in South Australia
    • Hawke K.G., Waddell R.G., Gordon D.L., Ratcliff R.M., Ward P.R., Kaldor J.M. HIV non-B subtype distribution: emerging trends and risk factors for imported and local infections newly diagnosed in South Australia. AIDS Res. Hum. Retroviruses 2012, 25.
    • (2012) AIDS Res. Hum. Retroviruses , pp. 25
    • Hawke, K.G.1    Waddell, R.G.2    Gordon, D.L.3    Ratcliff, R.M.4    Ward, P.R.5    Kaldor, J.M.6
  • 15
    • 33750253231 scopus 로고    scopus 로고
    • Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004
    • Hemelaar J., Gouws E., Ghys P.D., Osmanov S. Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004. AIDS 2006, 20:W13-W23.
    • (2006) AIDS , vol.20
    • Hemelaar, J.1    Gouws, E.2    Ghys, P.D.3    Osmanov, S.4
  • 16
    • 33745891482 scopus 로고    scopus 로고
    • Efficacy of antiretroviral therapy in individuals infected with HIV-1 non-B subtypes
    • Holguín A., Ramirez de Arellano E., Rivas P., Soriano V. Efficacy of antiretroviral therapy in individuals infected with HIV-1 non-B subtypes. AIDS Rev. 2006, 8:98-107.
    • (2006) AIDS Rev. , vol.8 , pp. 98-107
    • Holguín, A.1    Ramirez de Arellano, E.2    Rivas, P.3    Soriano, V.4
  • 17
    • 52449125643 scopus 로고    scopus 로고
    • Increase of non-B subtypes and recombinants among newly diagnosed HIV-1 native Spaniards and immigrants in Spain
    • Holguín A., de Mulder M., Yebra G., López M., Soriano V. Increase of non-B subtypes and recombinants among newly diagnosed HIV-1 native Spaniards and immigrants in Spain. Curr. HIV Res. 2008, 6:327-334.
    • (2008) Curr. HIV Res. , vol.6 , pp. 327-334
    • Holguín, A.1    de Mulder, M.2    Yebra, G.3    López, M.4    Soriano, V.5
  • 18
    • 38849173794 scopus 로고    scopus 로고
    • Genetic characterization of complex inter-recombinant HIV-1 strains circulating in Spain and reliability of distinct rapid subtyping tools
    • Holguín A., Lospitao E., López M., de Arellano E.R., Pena M.J., del Romero J., Martín C., Soriano V. Genetic characterization of complex inter-recombinant HIV-1 strains circulating in Spain and reliability of distinct rapid subtyping tools. J. Med. Virol. 2008, 80:383-391.
    • (2008) J. Med. Virol. , vol.80 , pp. 383-391
    • Holguín, A.1    Lospitao, E.2    López, M.3    de Arellano, E.R.4    Pena, M.J.5    del Romero, J.6    Martín, C.7    Soriano, V.8
  • 19
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 24
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 1999, 73:152-160.
    • (1999) J. Virol. , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6    Ingersoll, R.7    Sheppard, H.W.8    Ray, S.C.9
  • 29
    • 73149110870 scopus 로고    scopus 로고
    • Near full-length genome characterization of HIV type 1 unique BC recombinant forms from Southern Brazil
    • Passaes C.P., Guimarães M.L., Bello G., Morgado M.G. Near full-length genome characterization of HIV type 1 unique BC recombinant forms from Southern Brazil. AIDS Res. Hum. Retroviruses 2009, 25:1339-1344.
    • (2009) AIDS Res. Hum. Retroviruses , vol.25 , pp. 1339-1344
    • Passaes, C.P.1    Guimarães, M.L.2    Bello, G.3    Morgado, M.G.4
  • 30
    • 1642465048 scopus 로고    scopus 로고
    • Genetic diversity of HIV in Africa: impact on diagnosis, treatment, vaccine development and trials
    • Peeters M., Toure-Kane C., Nkengasong J.N. Genetic diversity of HIV in Africa: impact on diagnosis, treatment, vaccine development and trials. AIDS 2003, 17:2547-2560.
    • (2003) AIDS , vol.17 , pp. 2547-2560
    • Peeters, M.1    Toure-Kane, C.2    Nkengasong, J.N.3
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 35
    • 0028793170 scopus 로고
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
    • Salminen M.O., Carr J.K., Burke D.S., McCutchan F.E. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res. Hum. Retroviruses 1995, 11:1423-1425.
    • (1995) AIDS Res. Hum. Retroviruses , vol.11 , pp. 1423-1425
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.S.3    McCutchan, F.E.4
  • 37
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quar- tets and parallel computing
    • Schmidt H.A., Strimmer K., Vingron M., von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quar- tets and parallel computing. Bioinformatics 2002, 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 39
    • 84858308626 scopus 로고    scopus 로고
    • StataCorp ,StataCorp LP, College Station (TX)
    • StataCorp Stata Statistical Software: Release 12 2011, StataCorp LP, College Station (TX).
    • (2011) Stata Statistical Software: Release 12
  • 40
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 30944461040 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update
    • Thomson M.M., Nájera R. Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update. AIDS Rev. 2005, 7:210-224.
    • (2005) AIDS Rev. , vol.7 , pp. 210-224
    • Thomson, M.M.1    Nájera, R.2
  • 44
    • 1442274710 scopus 로고    scopus 로고
    • For the Group for HIV-1 Antiretroviral Studies in Sicily Detection of HIV type 1 non-B subtypes in Sicily, Italy
    • Tramuto F., Vitale F., Bonura F., Romano N. For the Group for HIV-1 Antiretroviral Studies in Sicily Detection of HIV type 1 non-B subtypes in Sicily, Italy. AIDS Res. Hum. Retroviruses 2004, 20:251-254.
    • (2004) AIDS Res. Hum. Retroviruses , vol.20 , pp. 251-254
    • Tramuto, F.1    Vitale, F.2    Bonura, F.3    Romano, N.4
  • 45
    • 35348916792 scopus 로고    scopus 로고
    • For the Group for HIV-1 Antiretroviral Studies in Sicily Genetic diversity of HIV-1 non-B strains in Sicily evidence of intersubtype recombinants by sequence analysis of gag, pol, and env genes
    • Tramuto F., Bonura F., Perna A.M., Mancuso S., Firenze A., Romano N., Vitale F. For the Group for HIV-1 Antiretroviral Studies in Sicily Genetic diversity of HIV-1 non-B strains in Sicily evidence of intersubtype recombinants by sequence analysis of gag, pol, and env genes. AIDS Res. Hum. Retroviruses 2007, 23:1131-1138.
    • (2007) AIDS Res. Hum. Retroviruses , vol.23 , pp. 1131-1138
    • Tramuto, F.1    Bonura, F.2    Perna, A.M.3    Mancuso, S.4    Firenze, A.5    Romano, N.6    Vitale, F.7
  • 48
    • 3843112243 scopus 로고    scopus 로고
    • HIV-1 subtype distribution and the problem of drug resistance
    • Wainberg M.A. HIV-1 subtype distribution and the problem of drug resistance. AIDS 2004, Suppl. 3:S63-S68.
    • (2004) AIDS , Issue.SUPPL. 3
    • Wainberg, M.A.1
  • 49
    • 84856188509 scopus 로고    scopus 로고
    • Cohort of the Spanish AIDS Research Network (CoRIS) Most HIV type 1 non-B infections in the Spanish cohort of antiretroviral treatment-naïve HIV-infected patients (CoRIS) are due to recombinant viruses
    • Yebra G., de Mulder M., Martín L., Rodríguez C., Labarga P., Viciana I., Berenguer J., Alemán M.R., Pineda J.A., García F., Holguín A. Cohort of the Spanish AIDS Research Network (CoRIS) Most HIV type 1 non-B infections in the Spanish cohort of antiretroviral treatment-naïve HIV-infected patients (CoRIS) are due to recombinant viruses. J. Clin. Microbiol. 2012, 50:407-413.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 407-413
    • Yebra, G.1    de Mulder, M.2    Martín, L.3    Rodríguez, C.4    Labarga, P.5    Viciana, I.6    Berenguer, J.7    Alemán, M.R.8    Pineda, J.A.9    García, F.10    Holguín, A.11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.