-
1
-
-
0028939919
-
Recombination in HIV-1
-
Robertson DL, Sharp PM, McCutchan FE, Hahn BH. Recombination in HIV-1. Nature 1995, 374:124-126.
-
(1995)
Nature
, vol.374
, pp. 124-126
-
-
Robertson, D.L.1
Sharp, P.M.2
McCutchan, F.E.3
Hahn, B.H.4
-
2
-
-
77956428155
-
-
HIV-1 Subtype and Circulating Recombinant Form (CRF) Reference Sequences, 2005. Los Alamos National Laboratory, Los Alamos, NM 87545., Available at, (accessed March 2010)
-
Leitner T, Korber B, Daniels M, Calef C, Foley B. http://www.hiv.lanl.gov/content/sequence/HIV/COMPENDIUM/2005/partI/leitn er.pdf, HIV-1 Subtype and Circulating Recombinant Form (CRF) Reference Sequences, 2005. Los Alamos National Laboratory, Los Alamos, NM 87545., Available at, (accessed March 2010)
-
-
-
Leitner, T.1
Korber, B.2
Daniels, M.3
Calef, C.4
Foley, B.5
-
3
-
-
42049086982
-
The challenge of HIV-1 subtype diversity
-
Taylor BS, Hammer SM. The challenge of HIV-1 subtype diversity. New Engl J Med 2008, 12:1590-1602.
-
(2008)
New Engl J Med
, vol.12
, pp. 1590-1602
-
-
Taylor, B.S.1
Hammer, S.M.2
-
4
-
-
33750253231
-
Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004
-
Hemelaar J, Gouws E, Ghys PD, Osmanov S. Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004. AIDS 2006, 20:W13-W23.
-
(2006)
AIDS
, vol.20
-
-
Hemelaar, J.1
Gouws, E.2
Ghys, P.D.3
Osmanov, S.4
-
5
-
-
0029795801
-
Evidence for HIV type 1 strains of U.S. intravenous drug users as founders of AIDS epidemic among intravenous drug users in northern Europe
-
Lukashov VV, Kuiken CL, Vlahov D, Coutinho RA, Goudsmit J. Evidence for HIV type 1 strains of U.S. intravenous drug users as founders of AIDS epidemic among intravenous drug users in northern Europe. AIDS Res Hum Retroviruses 1996, 12:1179-1183.
-
(1996)
AIDS Res Hum Retroviruses
, vol.12
, pp. 1179-1183
-
-
Lukashov, V.V.1
Kuiken, C.L.2
Vlahov, D.3
Coutinho, R.A.4
Goudsmit, J.5
-
6
-
-
0030892866
-
Dynamics of the HIV-1 subtype distribution in the Swedish HIV-1 epidemic during the period 1980 to 1993
-
Sonnerborg A, Durdevic S, Giesecke J, Sällberg M. Dynamics of the HIV-1 subtype distribution in the Swedish HIV-1 epidemic during the period 1980 to 1993. AIDS Res Hum Retroviruses 1997, 13:343-345.
-
(1997)
AIDS Res Hum Retroviruses
, vol.13
, pp. 343-345
-
-
Sonnerborg, A.1
Durdevic, S.2
Giesecke, J.3
Sällberg, M.4
-
7
-
-
0035881079
-
ICONA study group. Increasing prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences
-
Balotta C, Facchi G, Violin M. ICONA study group. Increasing prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences. J Acquir Immune Defic Syndr 2001, 27:499-505.
-
(2001)
J Acquir Immune Defic Syndr
, vol.27
, pp. 499-505
-
-
Balotta, C.1
Facchi, G.2
Violin, M.3
et al4
-
8
-
-
12144287630
-
Stable prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with primary HIV-1 infection in France
-
Chaix ML, Descamps D, Harzic M. Stable prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with primary HIV-1 infection in France. AIDS 2003, 17:2635-2643.
-
(2003)
AIDS
, vol.17
, pp. 2635-2643
-
-
Chaix, M.L.1
Descamps, D.2
Harzic, M.3
et al4
-
10
-
-
25144444139
-
HIV-1 subtypes in Spain: a retrospective analysis from 1995 to 2003
-
Lospitao E, Alvarez A, Soriano V, Holguín A. HIV-1 subtypes in Spain: a retrospective analysis from 1995 to 2003. HIV Med 2005, 6:313-320.
-
(2005)
HIV Med
, vol.6
, pp. 313-320
-
-
Lospitao, E.1
Alvarez, A.2
Soriano, V.3
Holguín, A.4
-
11
-
-
36348971793
-
Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1
-
Gifford RJ, de Oliveira T, Rambaut A. Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1. J Virol 2007, 81:13050-13056.
-
(2007)
J Virol
, vol.81
, pp. 13050-13056
-
-
Gifford, R.J.1
de Oliveira, T.2
Rambaut, A.3
et al4
-
12
-
-
34247570910
-
Portuguese SPREAD network. Molecular epidemiology and prevalence of drug resistance-associated mutations in newly diagnosed HIV-1 patients in Portugal
-
Palma AC, Araújo F, Duque V, Borges F, Paixão MT, Camacho R. Portuguese SPREAD network. Molecular epidemiology and prevalence of drug resistance-associated mutations in newly diagnosed HIV-1 patients in Portugal. Infect Genet Evol 2007, 7:391-398.
-
(2007)
Infect Genet Evol
, vol.7
, pp. 391-398
-
-
Palma, A.C.1
Araújo, F.2
Duque, V.3
Borges, F.4
Paixão, M.T.5
Camacho, R.6
-
13
-
-
37349088627
-
Swiss HIV cohort study. Transmission of HIV-1 drug resistance in Switzerland: a 10-year molecular epidemiology survey
-
Yerly S, von Wyl V, Ledergerber B. Swiss HIV cohort study. Transmission of HIV-1 drug resistance in Switzerland: a 10-year molecular epidemiology survey. AIDS 2007, 21:2223-2229.
-
(2007)
AIDS
, vol.21
, pp. 2223-2229
-
-
Yerly, S.1
von Wyl, V.2
Ledergerber, B.3
et al4
-
14
-
-
27944503360
-
CASCADE collaboration. Prevalence of transmitted HIV-1 drug resistance and the role of resistance algorithms: data from seroconverters in the CASCADE collaboration from 1987 to 2003
-
Masquelier B, Bhaskaran K, Pillay D. CASCADE collaboration. Prevalence of transmitted HIV-1 drug resistance and the role of resistance algorithms: data from seroconverters in the CASCADE collaboration from 1987 to 2003. J Acquir Immune Defic Syndr 2005, 40:505-511.
-
(2005)
J Acquir Immune Defic Syndr
, vol.40
, pp. 505-511
-
-
Masquelier, B.1
Bhaskaran, K.2
Pillay, D.3
et al4
-
15
-
-
24644472997
-
Prevalence of drug-resistant HIV-1 variants in untreated individuals in Europe: implications for clinical management
-
Wensing AM, Vijver DA, Angarano G. Prevalence of drug-resistant HIV-1 variants in untreated individuals in Europe: implications for clinical management. J Infect Dis 2005, 192:958-966.
-
(2005)
J Infect Dis
, vol.192
, pp. 958-966
-
-
Wensing, A.M.1
Vijver, D.A.2
Angarano, G.3
et al4
-
16
-
-
41449090659
-
Transmission of drug-resistant HIV-1 in Europe remains limited to single classes
-
Wensing AMJ, Vercauteren J, Vijver DA. Transmission of drug-resistant HIV-1 in Europe remains limited to single classes. AIDS 2008, 22:625-635.
-
(2008)
AIDS
, vol.22
, pp. 625-635
-
-
Wensing, A.M.J.1
Vercauteren, J.2
Vijver, D.A.3
et al4
-
17
-
-
0036319711
-
Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy
-
Thomson MM, Pérez-Alvarez L, Nájera R. Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy. Lancet Infect Dis 2002, 2:461-471.
-
(2002)
Lancet Infect Dis
, vol.2
, pp. 461-471
-
-
Thomson, M.M.1
Pérez-Alvarez, L.2
Nájera, R.3
-
18
-
-
77956441003
-
-
Notiziario COA Marzo 2009. Available at, (accessed March 2010)
-
http://www.iss.it/binary/publ/cont/COAonline.pdf, Notiziario COA Marzo 2009. Available at, (accessed March 2010)
-
-
-
-
19
-
-
24644432882
-
Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain
-
Lemey P, Derdelinckx I, Rambaut A. Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain. J Virol 2005, 79:11981-11989.
-
(2005)
J Virol
, vol.79
, pp. 11981-11989
-
-
Lemey, P.1
Derdelinckx, I.2
Rambaut, A.3
et al4
-
20
-
-
62749131195
-
UK collaborative group on HIV drug resistance. Demonstration of sustained drug-resistant human immunodeficiency virus type 1 lineages circulating among treatment-naïve individuals
-
Hué S, Gifford RJ, Dunn D, Fernhill E, Pillay D. UK collaborative group on HIV drug resistance. Demonstration of sustained drug-resistant human immunodeficiency virus type 1 lineages circulating among treatment-naïve individuals. J Virol 2009, 83:2645-2654.
-
(2009)
J Virol
, vol.83
, pp. 2645-2654
-
-
Hué, S.1
Gifford, R.J.2
Dunn, D.3
Fernhill, E.4
Pillay, D.5
-
21
-
-
0031717906
-
Long-read direct infrared sequencing of crude PCR products for prediction of resistance to HIV-1 reverse transcriptase and protease inhibitors
-
Zazzi M, Riccio ML, Venturi G. Long-read direct infrared sequencing of crude PCR products for prediction of resistance to HIV-1 reverse transcriptase and protease inhibitors. Mol Biotechnol 1998, 10:1-8.
-
(1998)
Mol Biotechnol
, vol.10
, pp. 1-8
-
-
Zazzi, M.1
Riccio, M.L.2
Venturi, G.3
et al4
-
22
-
-
0036065416
-
Performance of an in-house genotypic antiretroviral resistance assay in patients pretreated with multiple human immunodeficiency virus type 1 protease and reverse transcriptase inhibitors
-
Peduzzi C, Pierotti P, Venturi G. Performance of an in-house genotypic antiretroviral resistance assay in patients pretreated with multiple human immunodeficiency virus type 1 protease and reverse transcriptase inhibitors. J Clin Virol 2002, 25:57-62.
-
(2002)
J Clin Virol
, vol.25
, pp. 57-62
-
-
Peduzzi, C.1
Pierotti, P.2
Venturi, G.3
et al4
-
23
-
-
0032212869
-
A novel subtype A/G/J recombinant full-length HIV type 1 genome from Burkina Faso
-
Oelrichs RB, Workman C, Laukkanen T, McCutchan FE, Deacon NJ. A novel subtype A/G/J recombinant full-length HIV type 1 genome from Burkina Faso. AIDS Res Hum Retroviruses 1998, 14:1495-1500.
-
(1998)
AIDS Res Hum Retroviruses
, vol.14
, pp. 1495-1500
-
-
Oelrichs, R.B.1
Workman, C.2
Laukkanen, T.3
McCutchan, F.E.4
Deacon, N.J.5
-
24
-
-
0033586982
-
Molecular analysis of the full-length genome of HIV type 1 subtype I: evidence of A/G/I recombination
-
Nasioulas G, Paraskevis D, Magiorkinis E, Theodoridou M, Hatzakis A. Molecular analysis of the full-length genome of HIV type 1 subtype I: evidence of A/G/I recombination. AIDS Res Hum Retroviruses 1999, 15:745-758.
-
(1999)
AIDS Res Hum Retroviruses
, vol.15
, pp. 745-758
-
-
Nasioulas, G.1
Paraskevis, D.2
Magiorkinis, E.3
Theodoridou, M.4
Hatzakis, A.5
-
25
-
-
20044395615
-
HIV-1 subtypes and circulating recombinant forms (CRFs) from HIV-infected patients residing in two regions of central and southern Italy
-
Monno L, Brindicci G, Lo Caputo S. HIV-1 subtypes and circulating recombinant forms (CRFs) from HIV-infected patients residing in two regions of central and southern Italy. J Med Virol 2005, 75:483-490.
-
(2005)
J Med Virol
, vol.75
, pp. 483-490
-
-
Monno, L.1
Brindicci, G.2
Lo Caputo, S.3
et al4
-
26
-
-
43249128155
-
Changes in circulation of B and non-B HIV strains: spotlight on a reference centre for infectious diseases in Northern Italy
-
Baldanti F, Paolucci S, Ravasi G. Changes in circulation of B and non-B HIV strains: spotlight on a reference centre for infectious diseases in Northern Italy. J Med Virol 2008, 80:947-952.
-
(2008)
J Med Virol
, vol.80
, pp. 947-952
-
-
Baldanti, F.1
Paolucci, S.2
Ravasi, G.3
et al4
-
27
-
-
30944461040
-
Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update
-
Thomson MM, Nájera R. Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update. AIDS Rev 2005, 7:210-224.
-
(2005)
AIDS Rev
, vol.7
, pp. 210-224
-
-
Thomson, M.M.1
Nájera, R.2
-
28
-
-
0034104243
-
Genetic evidence of multiple transmissions of HIV type 1 subtype F within Romania from adult blood donors to children
-
Op De Coul E, van den Burg R, Asjö B. Genetic evidence of multiple transmissions of HIV type 1 subtype F within Romania from adult blood donors to children. AIDS Res Hum Retroviruses 2000, 16:327-336.
-
(2000)
AIDS Res Hum Retroviruses
, vol.16
, pp. 327-336
-
-
Op De Coul, E.1
van den Burg, R.2
Asjö, B.3
et al4
-
29
-
-
6344241308
-
Analysis of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF
-
Thomson M, Sierra M, Tanuri A. Analysis of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF. AIDS Res Hum Retroviruses 2004, 20:1126-1133.
-
(2004)
AIDS Res Hum Retroviruses
, vol.20
, pp. 1126-1133
-
-
Thomson, M.1
Sierra, M.2
Tanuri, A.3
et al4
-
30
-
-
34247895553
-
Natural variability in the HR-1 and HR-2 domains of HIV type 1 gp41 from different clades circulating in Italy
-
Razzolini F, Vicenti I, Saladini F. Natural variability in the HR-1 and HR-2 domains of HIV type 1 gp41 from different clades circulating in Italy. AIDS Res Hum Retroviruses 2007, 23:558-563.
-
(2007)
AIDS Res Hum Retroviruses
, vol.23
, pp. 558-563
-
-
Razzolini, F.1
Vicenti, I.2
Saladini, F.3
et al4
-
31
-
-
53649083887
-
Performance of three commercial viral load assays, versant human immunodeficiency virus type 1 (HIV-1) RNA bDNA v3.0, Cobas AmpliPrep/Cobas TaqMan HIV-1, and NucliSens HIV-1 EasyQ v1.2, testing HIV-1 non-B subtypes and recombinant variants
-
Holguín A, López M, Molinero M, Soriano V. Performance of three commercial viral load assays, versant human immunodeficiency virus type 1 (HIV-1) RNA bDNA v3.0, Cobas AmpliPrep/Cobas TaqMan HIV-1, and NucliSens HIV-1 EasyQ v1.2, testing HIV-1 non-B subtypes and recombinant variants. J Clin Microbiol 2008, 46:2918-2923.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 2918-2923
-
-
Holguín, A.1
López, M.2
Molinero, M.3
Soriano, V.4
-
32
-
-
34547115470
-
Natural variation in the V3 crown of human immunodeficiency virus type 1 affects replicative fitness and entry inhibitor sensitivity
-
Lobritz MA, Marozsan AJ, Troyer RM, Arts EJ. Natural variation in the V3 crown of human immunodeficiency virus type 1 affects replicative fitness and entry inhibitor sensitivity. J Virol 2007, 81:8258-8269.
-
(2007)
J Virol
, vol.81
, pp. 8258-8269
-
-
Lobritz, M.A.1
Marozsan, A.J.2
Troyer, R.M.3
Arts, E.J.4
-
33
-
-
34547128097
-
Coreceptor tropism in human immunodeficiency virus type 1 subtype D: high prevalence of CXCR4 tropism and heterogeneous composition of viral populations
-
Huang W, Eshleman SH, Toma J. Coreceptor tropism in human immunodeficiency virus type 1 subtype D: high prevalence of CXCR4 tropism and heterogeneous composition of viral populations. J Virol 2007, 81:7885-7893.
-
(2007)
J Virol
, vol.81
, pp. 7885-7893
-
-
Huang, W.1
Eshleman, S.H.2
Toma, J.3
et al4
-
34
-
-
71049159978
-
Differences in resistance mutations among HIV-1 non-subtype B infections: a systematic review of evidence (1996-2008)
-
Martinez-Cajas JL, Pai NP, Klein MB, Wainberg MA. Differences in resistance mutations among HIV-1 non-subtype B infections: a systematic review of evidence (1996-2008). J Int AIDS Soc 2009, 12:11.
-
(2009)
J Int AIDS Soc
, vol.12
, pp. 11
-
-
Martinez-Cajas, J.L.1
Pai, N.P.2
Klein, M.B.3
Wainberg, M.A.4
-
35
-
-
21644472626
-
The replicative fitness of primary human immunodeficiency virus type 1 (HIV-1) group M, HIV-1 group O, and HIV-2 isolates
-
Ariën KK, Abraha A, Quiñones-Mateu ME, Kestens L, Vanham G, Arts EJ. The replicative fitness of primary human immunodeficiency virus type 1 (HIV-1) group M, HIV-1 group O, and HIV-2 isolates. J Virol 2005, 79:8979-8990.
-
(2005)
J Virol
, vol.79
, pp. 8979-8990
-
-
Ariën, K.K.1
Abraha, A.2
Quiñones-Mateu, M.E.3
Kestens, L.4
Vanham, G.5
Arts, E.J.6
-
36
-
-
64549117838
-
Impact of HIV-1 viral subtype on CD4+T-cell decline and clinical outcomes in antiretroviral naive patients receiving universal healthcare
-
Keller M, Lu Y, Lalonde RG, Klein MB. Impact of HIV-1 viral subtype on CD4+T-cell decline and clinical outcomes in antiretroviral naive patients receiving universal healthcare. AIDS 2009, 23:731-737.
-
(2009)
AIDS
, vol.23
, pp. 731-737
-
-
Keller, M.1
Lu, Y.2
Lalonde, R.G.3
Klein, M.B.4
-
37
-
-
23244440803
-
Comparison of mother-to-child transmission rates in Ugandan women with subtype A versus D HIV-1 who received single-dose nevirapine prophylaxis: HIV network for prevention trials 012
-
Eshleman SH, Guay LA, Mwatha A. Comparison of mother-to-child transmission rates in Ugandan women with subtype A versus D HIV-1 who received single-dose nevirapine prophylaxis: HIV network for prevention trials 012. J Acquir Immune Defic Syndr 2005, 39:593-597.
-
(2005)
J Acquir Immune Defic Syndr
, vol.39
, pp. 593-597
-
-
Eshleman, S.H.1
Guay, L.A.2
Mwatha, A.3
et al4
|