HIV-1 subtype F1 epidemiological networks among Italian heterosexual males are associated with introduction events from South America

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Lai, Alessia ^a   Simonetti, Francesco R ^a   Zehender, Gianguglielmo ^a   de Luca, Andrea ^b   Micheli, Valeria ^a   Meraviglia, Paola ^a   Corsi, Paola ^c   Bagnarelli, Patrizia ^d   Almi, Paolo ^e   Zoncada, Alessia ^f   Paolucci, Stefania ^g   Gonnelli, Angela ^e   Colao, Grazia ^h   Tacconi, Danilo ⁱ   Franzetti, Marco ^a   Ciccozzi, Massimo ^j   Zazzi, Maurizio ^b   Balotta, Claudia ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b UNIVERSITY OF SIENA   (Italy)

^c Unità Operativa Complessa of Infectious Diseases Careggi   (Italy)

^d UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

^e UNIVERSITY HOSPITAL OF SIENA   (Italy)

^f Infectious Diseases Istituti Ospedalieri   (Italy)

^g FONDAZIONE IRCCS POLICLINICO SAN MATTEO   (Italy)

^h Section of Virology Careggi   (Italy)

ⁱ Infectious Diseases Section   (Italy)

^j Italian Institute of Health   (Italy)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; BISEXUALITY; CHILD; CITIZENSHIP; CLADISTICS; CONTROLLED STUDY; DISEASE ASSOCIATION; FEMALE; GENE CLUSTER; GENE SEQUENCE; GENETIC VARIABILITY; HETEROSEXUAL MALE; HOMOSEXUALITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; HUMAN IMMUNODEFICIENCY VIRUS 1 SUBTYPE F1; INTRAVENOUS DRUG ABUSE; ITALY; MAJOR CLINICAL STUDY; MALE; MICROBIAL POPULATION DYNAMICS; NONHUMAN; PHYLOGENETIC TREE; RACE DIFFERENCE; ROMANIA; SCHOOL CHILD; SOUTH AMERICA; STRUCTURAL GENE; VIRUS RESISTANCE; VIRUS STRAIN; VIRUS TRANSMISSION;

ADOLESCENT; ADULT; AGED; CHILD; CLUSTER ANALYSIS; EUROPE, EASTERN; EUROPEAN CONTINENTAL ANCESTRY GROUP; FEMALE; HIV INFECTIONS; HIV-1; HUMANS; ITALY; MALE; MIDDLE AGED; PHYLOGENY; RISK FACTORS; SEXUALITY; SOUTH AMERICA; YOUNG ADULT;

HUMAN IMMUNODEFICIENCY VIRUS 1; RUMANIA;

EID: 84864483918     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0042223     Document Type: Article

References (25)

1. Tebit DM, Arts EJ, ((2011)) Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease. Lancet Infect Dis 11:: 45--56.
2. Balotta C, Facchi G, Violin M, Van dooren S, Cozzi-Lepri A, et al. ((2001)) Increasing prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences. J Acquir Immune Defic Syndr 27:: 499--505.
3. Chaix ML, Descamps D, Harzic M, Schneider V, Deveau C, ((2003)) Stable prevalence of genotypic drug resistance mutations but increase in non-B virus among patients with primary HIV-1 infection in France. AIDS 17:: 2635--2643.
4. Snoeck J, Van Laethem K, Hermans P, Van Wijngaerden E, Derdelinckx I, et al. ((2004)) Rising prevalence of HIV-1 non-B subtypes in Belgium: 1983-2001. J Acquir Immune Defic Syndr 35:: 279--285.
5. Lospitao E, Alvarez A, Soriano V, Holguín A, ((2005)) HIV-1 subtypes in Spain: a retrospective analysis from 1995 to 2003. HIV Med 6:: 313--320.
6. Gifford RJ, de Oliveira T, Rambaut A, Pybus OG, Dunn D, et al. ((2007)) UK Collaborative Group on HIV Drug Resistance: Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1. J Virol 81:: 13050--13056.
7. Suligoi B, Boros S, Camoni L, Lepore D, ((2009)) Aggiornamento delle nuove diagnosi di infezione da HIV al 31dicembre 2007 e dei casi di AIDS in Italia al 31 dicembre 2008. Notiziario dell'Istituto Superiore di Sanità 22:: 3--27.
8. Lai A, Riva C, Marconi A, Balestrieri M, Razzolini F, et al. ((2010)) Changing patterns in HIV-1 non-B clade prevalence and diversity in Italy over three decades. HIV Med 11:: 593--602.
9. Niama FR, Toure-Kane C, Vidal N, Obengui P, Bikandou B, et al. ((2006)) HIV-1 subtypes and recombinants in the Republic of Congo. Infect Genet Evol 6:: 337--343.
10. Guimarães ML, Vicente AC, Otsuki K, da Silva RF, Francisco M, et al. ((2009)) Close phylogenetic relationship between Angolan and Rumanian HIV-1 subtype F1 isolates. Retrovirology 6:: 39.
11. Montano SM, Sanchez JL, Laguna-Torres A, Cuchi P, Avila MM, et al. ((2005)) Prevalences, genotypes, and risk factors for HIV transmission in South America. J Acquir Immune Defic Syndr 40:: 57--64.
12. Dumitrescu O, Kalish ML, Kliks SC, Bandea CI, Levy JA, ((1994)) Characterization of human immunodeficiency virus type 1 isolates from children in Romania: identification of a new envelope subtype. J Infect Dis 169:: 281--288.
13. Riva C, Lai A, Caramma I, Corvasce S, Violin M, et al. ((2010)) Transmitted HIV Type 1 drug resistance and Non-B subtypes prevalence among seroconverters and newly diagnosed patients from 1992 to 2005 in Italy. AIDS Res Hum Retroviruses 26:: 41--49.
14. Ciccozzi M, Bon I, Ciotti M, ((2010)) Do the HIV-1 subtypes circulating in Italy resemble the Red Queen running in Carroll's novel?. New Microbiol 33:: 179--181.
15. Callegaro A, Svicher V, Alteri C, Lo Presti A, Valenti D, et al. ((2011)) Epidemiological network analysis in HIV-1 B infected patients diagnosed in Italy between 2000 and 2008. Infect Genet Evol 11:: 624--632.
16. Lai A, Violin M, Ebranati E, Franzetti M, Micheli V, et al. ((2011)) Transmission of Resistant HIV Type 1 Variants and Epidemiological Chains in Italian Newly Diagnosed Individuals. AIDS Res Hum Retroviruses 27, in press.
17. Baldanti F, Paolucci S, Ravasi G, Maccabruni A, Moriggia A, et al. ((2008)) Changes in circulation of B and non-B HIV strains: spotlight on a reference centre for infectious diseases in Northern Italy. J Med Virol 80:: 947--952.
18. Lewis F, Hughes GJ, Rambaut A, Pozniak A, Leigh Brown AJ, ((2008)) Episodic sexual transmission of HIV revealed by molecular phylodynamics. PLoS Medn 5:: 392--402.
19. HuéS, Pillay D, Clewley JP, Pybus OG, ((2005)) Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups. Proc Natl Acad Sci USA 102:: 4425--4429.
20. Pybus OG, Rambaut A, ((2009)) Evolutionary analysis of the dynamics of viral infectious disease. Nat Rev Genet 10:: 540--550.
21. Huelsenbeck JP, Ronquist F, ((2001)) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:: 754--755.
22. Drummond AJ, Rambaut A, ((2007)) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:: 214.
23. Kass RE, Raftery AE, ((1995)) Bayes factors. Journal of American Statistical Association 90:: 773--795.
24. Zaccarelli M, Spizzichino L, Venezia S, Antinori A, Gattari P, ((2004)) Changes in regular condom use among immigrant transsexuals attending a counselling and testing reference site in central Rome: a 12 year study. Sex Transm Infect 80:: 541--545.
25. Franzetti M, Lai A, Simonetti FR, Bozzi G, De Luca A, et al. ((2012)) High burden of transmitted HIV-1 drug resistance in Italian patients carrying F1 subtype. J Antimicrob Chemother 67:: 1250--1253.