Identification of new CRF51-01B in Singapore using full genome analysis of three HIV type 1 isolates

AIDS Research and Human Retroviruses

Volumn 28, Issue 5, 2012, Pages 527-530

  Ng, Oon Tek ^a,b   Eyzaguirre, Lindsay M ^c   Carr, Jean K ^d   Chew, Kuan Kiat ^b   Lin, Li ^b   Chua, Arlene ^b   Leo, Yee Sin ^b   Redd, Andrew D ^e   Quinn, Thomas C ^a,e   Laeyendecker, Oliver ^a,e  

^a JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b TAN TOCK SENG HOSPITAL   (Singapore)

^c UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^d SAINT JAMES SCHOOL OF MEDICINE   (Anguilla)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL DNA;

ADULT; ARTICLE; CASE REPORT; CIRCULATING RECOMBINANT FORM51 01B; FEMALE; GENE IDENTIFICATION; GENETIC ANALYSIS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; MALE; NUCLEOTIDE SEQUENCE; PERIPHERAL BLOOD MONONUCLEAR CELL; PHYLOGENETIC TREE; PRIORITY JOURNAL; SINGAPORE; VIRUS ISOLATION; VIRUS STRAIN;

ADULT; BASE SEQUENCE; GENOTYPE; HIV SEROPOSITIVITY; HIV-1; HUMANS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; PHYLOGENY; SINGAPORE;

EID: 84860456874     PISSN: 08892229     EISSN: 19318405     Source Type: Journal    
DOI: 10.1089/aid.2011.0177     Document Type: Article

References (15)

1. Tovanabutra S, Watanaveeradej V, Viputtikul K, et al.: A new circulating recombinant form, CRF15-01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand. AIDS Res Hum Retroviruses 2003;19:561-567. (Pubitemid 36900574)
2. Tee KK, Li XJ, Nohtomi K, Ng KP, Kamarulzaman A, and Takebe Y: Identification of a novel circulating recombinant form (CRF33-01B) disseminating widely among various risk populations in Kuala Lumpur, Malaysia. J Acquir Immune Defic Syndr 2006;43:523-529. (Pubitemid 44885617)
3. Tovanabutra S, Kijak GH, Beyrer C, et al.: Identification of CRF34-01B, a second circulating recombinant form unrelated to and more complex than CRF15-01B, among injecting drug users in northern Thailand. AIDS Res Hum Retroviruses 2007;23:829-833. (Pubitemid 47047923)
4. Li Y, Tee KK, Liao H, et al.: Identification of a novel secondgeneration circulating recombinant form (CRF48-01B) in Malaysia: A descendant of the previously identified CRF33-01B. J Acquir Immune Defic Syndr 2010;54:129-136.
5. Ng OT, Munshaw S, Lamers SL, et al.: Molecular epidemiology of HIV type 1 in Singapore and identification of novel CRF01-AE/B recombinant forms. AIDS Res Hum Retroviruses 2011 Feb 14. [Epub ahead of print]; DOI: 10.1089/ aid.2010.0364.
6. Salminen MO, Carr JK, Burke DS, and McCutchan FE: Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 1995;11:1423-1425.
7. Carr JK, Salminen MO, Koch C, et al.: Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand. J Virol 1996;70:5935-5943. (Pubitemid 26266807)
8. MacDGE: Genetic Data Environment for MacOSX (Accessed May 13, 2011). Available at http://macgde.bio.cmich.edu/.
9. Kumar S, Tamura K, and Nei M: MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 2004;5:150-163.
10. Saitou N and Nei M: The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406-425.
11. HIV Sequence Database. (Accessed May 13, 2011). Available at http://www.hiv/lanl.gov/content/sequence/HIV/mainpage .html.
12. jpHMM. (Accessed July 11, 2011). Available at http://jphmm .gobics.de/.
13. Lole KS, Bollinger RC, Paranjape RS, et al.: Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 1999;73:152-160. (Pubitemid 28565356)
14. RIP. (Accessed July 11, 2011). Available at http:// www.hiv.lanl.gov/ content/sequence/RIP/RIP.html.
15. Robertson DL, Anderson JP, Bradac JA, et al.: HIV-1 nomenclature proposal. Science 2000;288:55-56.