메뉴 건너뛰기




Volumn 8, Issue 3, 2013, Pages

Genetic Characterization of Natural Variants of Vpu from HIV-1 Infected Individuals from Northern India and Their Impact on Virus Release and Cell Death

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

EID: 84875553536     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0059283     Document Type: Article
Times cited : (13)

References (39)
  • 1
    • 79957888573 scopus 로고    scopus 로고
    • Mechanisms of HIV-associated lymphocyte apoptosis: 2010
    • Cummins NW, Badley AD, (2010) Mechanisms of HIV-associated lymphocyte apoptosis: 2010. Cell Death and Disease 1: e99.
    • (2010) Cell Death and Disease , vol.1
    • Cummins, N.W.1    Badley, A.D.2
  • 2
    • 0034329318 scopus 로고    scopus 로고
    • Mechanisms of HIV-associated lymphocyte apoptosis
    • Badley AD, Pilon AA, Landay A, Lynch DH, (2000) Mechanisms of HIV-associated lymphocyte apoptosis. Blood 96: 2951-2964.
    • (2000) Blood , vol.96 , pp. 2951-2964
    • Badley, A.D.1    Pilon, A.A.2    Landay, A.3    Lynch, D.H.4
  • 3
    • 0032546817 scopus 로고    scopus 로고
    • HIV-1 regulatory/accessory genes: keys to unraveling viral and host cell biology
    • Emerman M, Malim MH, (1998) HIV-1 regulatory/accessory genes: keys to unraveling viral and host cell biology. Science 280: 1880-1884.
    • (1998) Science , vol.280 , pp. 1880-1884
    • Emerman, M.1    Malim, M.H.2
  • 4
    • 44649139364 scopus 로고    scopus 로고
    • HIV-1 accessory proteins-ensuring viral survival in a hostile environment
    • Malim MH, Emerman M, (2008) HIV-1 accessory proteins-ensuring viral survival in a hostile environment. Cell Host Microbe. 3: 388-398.
    • (2008) Cell Host Microbe , vol.3 , pp. 388-398
    • Malim, M.H.1    Emerman, M.2
  • 6
    • 0027787423 scopus 로고
    • The fastest genome evolution ever described: HIV variation in situ
    • Wain-Hobson S, (1993) The fastest genome evolution ever described: HIV variation in situ. Curr. Opin. Genet. Dev. 3: 878-883.
    • (1993) Curr. Opin. Genet. Dev , vol.3 , pp. 878-883
    • Wain-Hobson, S.1
  • 7
    • 0028289584 scopus 로고
    • Fidelity of HIV-1 reverse transcriptase copying a hypervariable region of the HIV-1 env gene
    • Ji J, Loeb LA, (1994) Fidelity of HIV-1 reverse transcriptase copying a hypervariable region of the HIV-1 env gene. Virology 199: 323-30.
    • (1994) Virology , vol.199 , pp. 323-330
    • Ji, J.1    Loeb, L.A.2
  • 8
    • 0036340475 scopus 로고    scopus 로고
    • Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation
    • Yusim K, Kesmir C, Gaschen B, Addo MM, Altfeld M, et al. (2002) Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation. J Virol. 76: 8757-68.
    • (2002) J Virol , vol.76 , pp. 8757-8768
    • Yusim, K.1    Kesmir, C.2    Gaschen, B.3    Addo, M.M.4    Altfeld, M.5
  • 9
    • 0023677668 scopus 로고
    • A novel gene of HIV-1, vpu, and its 16-kilodalton product
    • Strebel K, Klimkait T, Martin MA, (1988) A novel gene of HIV-1, vpu, and its 16-kilodalton product. Science 241: 1221-1223.
    • (1988) Science , vol.241 , pp. 1221-1223
    • Strebel, K.1    Klimkait, T.2    Martin, M.A.3
  • 11
    • 0023812813 scopus 로고
    • Human immunodeficiency virus type 1 has an additional coding sequence in the central region of the genome
    • Matsuda Z, Chou MJ, Matsuda M, Huang JH, Chen YM, et al. (1988) Human immunodeficiency virus type 1 has an additional coding sequence in the central region of the genome. Proc Natl Acad Sci U S A 85: 6968-6972.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 6968-6972
    • Matsuda, Z.1    Chou, M.J.2    Matsuda, M.3    Huang, J.H.4    Chen, Y.M.5
  • 13
    • 67749095196 scopus 로고    scopus 로고
    • Vpu Directs the Degradation of the Human Immunodeficiency Virus Restriction Factor BST-2/Tetherin via a βTrCP-Dependent Mechanism
    • Douglas JL, Viswanathan K, McCarroll MN, Gustin JK, Früh K, et al. (2009) Vpu Directs the Degradation of the Human Immunodeficiency Virus Restriction Factor BST-2/Tetherin via a βTrCP-Dependent Mechanism. J Virol. 83: 7931-7947.
    • (2009) J Virol , vol.83 , pp. 7931-7947
    • Douglas, J.L.1    Viswanathan, K.2    McCarroll, M.N.3    Gustin, J.K.4    Früh, K.5
  • 14
    • 0032012456 scopus 로고    scopus 로고
    • A novel human WD protein, h-beta TrCp, that interacts with HIV-1 Vpu connects CD4 to the ER degradation pathway through an F-box motif
    • Margottin F, Bour SP, Durand H, Selig L, Benichou S, et al. (1998) A novel human WD protein, h-beta TrCp, that interacts with HIV-1 Vpu connects CD4 to the ER degradation pathway through an F-box motif. Mol Cell. 1: 565-574.
    • (1998) Mol Cell , vol.1 , pp. 565-574
    • Margottin, F.1    Bour, S.P.2    Durand, H.3    Selig, L.4    Benichou, S.5
  • 15
    • 0028348370 scopus 로고
    • The human immunodeficiency virus type 1 encoded Vpu protein is phosphorylated by casein kinase-2 (CK-2) at positions Ser52 and Ser56 within a predicted alpha-helix-turn-alpha-helix-motif
    • Schubert U, Henklein P, Boldyreff B, Wingender E, Strebel K, et al. (1994) The human immunodeficiency virus type 1 encoded Vpu protein is phosphorylated by casein kinase-2 (CK-2) at positions Ser52 and Ser56 within a predicted alpha-helix-turn-alpha-helix-motif. J Mol Biol. 236: 16-25.
    • (1994) J Mol Biol , vol.236 , pp. 16-25
    • Schubert, U.1    Henklein, P.2    Boldyreff, B.3    Wingender, E.4    Strebel, K.5
  • 16
    • 0035163739 scopus 로고    scopus 로고
    • The Human Immunodeficiency Virus Type 1 Accessory Protein Vpu Induces Apoptosis by Suppressing the Nuclear Factor {kappa}β-dependent Expression of Antiapoptotic Factors
    • Akari H, Bour S, Kao S, Adachi A, Strebel K, (2001) The Human Immunodeficiency Virus Type 1 Accessory Protein Vpu Induces Apoptosis by Suppressing the Nuclear Factor {kappa}β-dependent Expression of Antiapoptotic Factors. J Exp Med. 194: 1299-1311.
    • (2001) J Exp Med , vol.194 , pp. 1299-1311
    • Akari, H.1    Bour, S.2    Kao, S.3    Adachi, A.4    Strebel, K.5
  • 17
    • 79959258599 scopus 로고    scopus 로고
    • Inhibition of β-TrcP-dependent ubiquitination of p53 by HIV-1 Vpu promotes p53-mediated apoptosis in human T cells
    • Verma S, Ali A, Arora S, Banerjea AC, (2011) Inhibition of β-TrcP-dependent ubiquitination of p53 by HIV-1 Vpu promotes p53-mediated apoptosis in human T cells. Blood. 117: 6600-6607.
    • (2011) Blood , vol.117 , pp. 6600-6607
    • Verma, S.1    Ali, A.2    Arora, S.3    Banerjea, A.C.4
  • 18
    • 0030069139 scopus 로고    scopus 로고
    • The two biological activities of human immunodeficiency virus type 1 Vpu protein involve two separable structural domains
    • Schubert U, Bour S, Ferrer-Montiel AV, Montal M, Maldarell F, et al. (1996) The two biological activities of human immunodeficiency virus type 1 Vpu protein involve two separable structural domains. J Virol. 70: 809-819.
    • (1996) J Virol , vol.70 , pp. 809-819
    • Schubert, U.1    Bour, S.2    Ferrer-Montiel, A.V.3    Montal, M.4    Maldarell, F.5
  • 19
    • 20444372631 scopus 로고    scopus 로고
    • Identification of a region within the cytoplasmic domain of the subtype B Vpu protein of human immunodeficiency virus type 1 (HIV-1) that is responsible for retention in the golgi complex and its absence in the Vpu protein from a subtype C HIV-1
    • Pacyniak E, Gomez ML, Gomez LM, Mulcahy ER, Jackson M, et al. (2005) Identification of a region within the cytoplasmic domain of the subtype B Vpu protein of human immunodeficiency virus type 1 (HIV-1) that is responsible for retention in the golgi complex and its absence in the Vpu protein from a subtype C HIV-1. AIDS Res Hum Retroviruses. 21: 379-394.
    • (2005) AIDS Res Hum Retroviruses , vol.21 , pp. 379-394
    • Pacyniak, E.1    Gomez, M.L.2    Gomez, L.M.3    Mulcahy, E.R.4    Jackson, M.5
  • 20
    • 35548939073 scopus 로고    scopus 로고
    • Oligomerization of the human immunodeficiency virus type 1 (HIV-1) Vpu protein - a genetic, biochemical and biophysical analysis
    • Hussain A, Das SR, Tanwar C, Jameel S, (2007) Oligomerization of the human immunodeficiency virus type 1 (HIV-1) Vpu protein - a genetic, biochemical and biophysical analysis. Virol J. 4: 81.
    • (2007) Virol J , vol.4 , pp. 81
    • Hussain, A.1    Das, S.R.2    Tanwar, C.3    Jameel, S.4
  • 21
    • 0033944532 scopus 로고    scopus 로고
    • Determination of Human Immunodeficiency Virus Type 1 Subtypes in Taiwan by vpu Gene Analysis
    • Lee CN, Wang WK, Fan WS, Twu SJ, Chen SC, et al. (2000) Determination of Human Immunodeficiency Virus Type 1 Subtypes in Taiwan by vpu Gene Analysis. J. Clin. Microbiol. 38: 2468.
    • (2000) J. Clin. Microbiol , vol.38 , pp. 2468
    • Lee, C.N.1    Wang, W.K.2    Fan, W.S.3    Twu, S.J.4    Chen, S.C.5
  • 23
    • 37849046974 scopus 로고    scopus 로고
    • Modulation of the severe CD4+ T-cell loss caused by a pathogenic simian-human immunodeficiency virus by replacement of the subtype B vpu with the vpu from a subtype C HIV-1 clinical isolate
    • Hill MS, Ruiz A, Pacyniak E, Pinson DM, Culley N, et al. (2008) Modulation of the severe CD4+ T-cell loss caused by a pathogenic simian-human immunodeficiency virus by replacement of the subtype B vpu with the vpu from a subtype C HIV-1 clinical isolate. Virology. 371: 86-97.
    • (2008) Virology , vol.371 , pp. 86-97
    • Hill, M.S.1    Ruiz, A.2    Pacyniak, E.3    Pinson, D.M.4    Culley, N.5
  • 24
    • 0022495870 scopus 로고
    • Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone
    • Adachi A, Gendelman HE, Koenig S, Folks T, Willey R, et al. (1986) Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone. J Virol. 59: 284-291.
    • (1986) J Virol , vol.59 , pp. 284-291
    • Adachi, A.1    Gendelman, H.E.2    Koenig, S.3    Folks, T.4    Willey, R.5
  • 25
    • 34547628246 scopus 로고    scopus 로고
    • Regulated Degradation of the HIV-1 Vpu Protein through a βTrCP-Independent Pathway Limits the Release of Viral Particles
    • Estrabaud E, Rouzic EL, Lopez-Vergès S, Morel M, Belaïdouni N, et al. (2007) Regulated Degradation of the HIV-1 Vpu Protein through a βTrCP-Independent Pathway Limits the Release of Viral Particles. PLoS Pathogens 7: e104.
    • (2007) PLoS Pathogens , vol.7
    • Estrabaud, E.1    Rouzic, E.L.2    Lopez-Vergès, S.3    Morel, M.4    Belaïdouni, N.5
  • 26
    • 84856946718 scopus 로고    scopus 로고
    • Transmembrane domain determinants of CD4 Downregulation by HIV-1 Vpu
    • Magadán JG, Bonifacino JS, (2012) Transmembrane domain determinants of CD4 Downregulation by HIV-1 Vpu. J Virol. 86: 757-72.
    • (2012) J Virol , vol.86 , pp. 757-772
    • Magadán, J.G.1    Bonifacino, J.S.2
  • 27
    • 84855272482 scopus 로고    scopus 로고
    • HIV-1 Vpu protein antagonizes innate restriction factor BST-2 via lipid-embedded helix-helix interactions
    • Skasko M, Wang Y, Tian Y, Tokarev A, Munguia J, et al. (2012) HIV-1 Vpu protein antagonizes innate restriction factor BST-2 via lipid-embedded helix-helix interactions. J Biol Chem. 287: 58-67.
    • (2012) J Biol Chem , vol.287 , pp. 58-67
    • Skasko, M.1    Wang, Y.2    Tian, Y.3    Tokarev, A.4    Munguia, J.5
  • 28
    • 79957966644 scopus 로고    scopus 로고
    • Polarity changes in the transmembrane domain core of HIV-1 Vpu inhibits its anti-tetherin activity
    • Lv M, Wang J, Wang X, Zuo T, Zhu Y, et al. (2011) Polarity changes in the transmembrane domain core of HIV-1 Vpu inhibits its anti-tetherin activity. PLoS One 6: e20890.
    • (2011) PLoS One , vol.6
    • Lv, M.1    Wang, J.2    Wang, X.3    Zuo, T.4    Zhu, Y.5
  • 29
    • 62449325310 scopus 로고    scopus 로고
    • Vpu enhances HIV-1 virus release in the absence of BST-2 cell surface down-modulation and intracellular depletion
    • Miyagi E, Andrew AJ, Kao S, Strebel K, (2009) Vpu enhances HIV-1 virus release in the absence of BST-2 cell surface down-modulation and intracellular depletion. Proc. Natl. Acad. Sci. USA 106: 2868-2873.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 2868-2873
    • Miyagi, E.1    Andrew, A.J.2    Kao, S.3    Strebel, K.4
  • 30
    • 0031908685 scopus 로고    scopus 로고
    • Mutational Analysis of the Human Immunodeficiency Virus Type 1 Vpu Transmembrane Domain That Promotes the Enhanced Release of Virus-Like Particles from the Plasma Membrane of Mammalian Cells
    • Paul M, Mazumder S, Raja N, Jabbar MA, (1998) Mutational Analysis of the Human Immunodeficiency Virus Type 1 Vpu Transmembrane Domain That Promotes the Enhanced Release of Virus-Like Particles from the Plasma Membrane of Mammalian Cells. J. Virol. 72: 1270.
    • (1998) J. Virol , vol.72 , pp. 1270
    • Paul, M.1    Mazumder, S.2    Raja, N.3    Jabbar, M.A.4
  • 31
    • 70350462731 scopus 로고    scopus 로고
    • Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr
    • Bano AS, Sood V, Neogi U, Goel N, Kuttiat VS, et al. (2009) Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr. J Gen Virol. 90: 2768-2776.
    • (2009) J Gen Virol , vol.90 , pp. 2768-2776
    • Bano, A.S.1    Sood, V.2    Neogi, U.3    Goel, N.4    Kuttiat, V.S.5
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M, (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 34
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 35
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 37
    • 77957258639 scopus 로고    scopus 로고
    • Viral replication is enhanced by an HIV-1 intersubtype recombination-derived Vpu protein
    • De Candia C, Espada C, Duette G, Ghiglione Y, Turk G, et al. (2010) Viral replication is enhanced by an HIV-1 intersubtype recombination-derived Vpu protein. Virol J. 7: 259.
    • (2010) Virol J , vol.7 , pp. 259
    • De Candia, C.1    Espada, C.2    Duette, G.3    Ghiglione, Y.4    Turk, G.5
  • 38
    • 0031702817 scopus 로고    scopus 로고
    • Regulation of Mdm-2 directed degradation by the C terminus of p53
    • Kubbutat MH, Ludwig RL, Ashcroft M, Vousden KH, (1998) Regulation of Mdm-2 directed degradation by the C terminus of p53. Mol Cell Biol. 18: 5690-5698.
    • (1998) Mol Cell Biol , vol.18 , pp. 5690-5698
    • Kubbutat, M.H.1    Ludwig, R.L.2    Ashcroft, M.3    Vousden, K.H.4
  • 39
    • 77649341752 scopus 로고    scopus 로고
    • A novel, rapid method to detect infectious HIV-1 from plasma of persons infected with HIV-1
    • Cornall A, Sharma L, Solomon A, Gorry PR, Crowe SM, (2010) A novel, rapid method to detect infectious HIV-1 from plasma of persons infected with HIV-1. J Virol Methods. 165: 90-96.
    • (2010) J Virol Methods , vol.165 , pp. 90-96
    • Cornall, A.1    Sharma, L.2    Solomon, A.3    Gorry, P.R.4    Crowe, S.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.