Determination of human immunodeficiency virus type 1 subtypes in Taiwan by vpu gene analysis

Journal of Clinical Microbiology

Volumn 38, Issue 7, 2000, Pages 2468-2474

  Lee, Chun Nan ^a,b   Wang, Wei Kung ^c   Fan, Wen Sheng ^a   Twu, Shing Jer ^d   Chen, Shou Chien ^e   Sheng, Ming Ching ^b   Chen, Mao Yuan ^f  

^a Graduate Institute of Biomedical Technology and School of Medical Technology   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

^c Graduate Institute of Microbiology   (Taiwan)

^d NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^e Taipei Munic Venereal Dis C ^*  (Taiwan)

^f NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DATA BASE; EXTRACTION; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENOTYPE; HUMAN IMMUNODEFICIENCY VIRUS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PREVALENCE; PRIORITY JOURNAL; TAIWAN;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; RNA VIRUSES;

EID: 0033944532     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.38.7.2468-2474.2000     Document Type: Article

References (26)

1. Carr, J. K., M. O. Salminen, C. Koch, D. Gotte, A. W. Artenstein, P. A. Hegerich, D. St. Louis, D. S. Burke, and F. E. McCutchan. 1996. Full-length sequence and mosaic structure of a human immunodeficiency virus type 1 isolate from Thailand. J. Virol. 70:5935-5943.
2. Carr, J. K., M. O. Salminen, J. Albert, E. Sanders-Buell, D. Gotte, D. L. Birx, and F. E. McCutchan. 1998. Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants. Virology 247:22-31.
3. Chen, M. Y., G. R. Wang, C. Y. Chuang, and Y. T. Shih. 1994. Human immunodeficiency virus infection in Taiwan, 1984 to 1994. J. Formos. Med. Assoc. 93:901-905.
4. Chen, Y. M. A., C. M. Lee, R. Y. Lin, and H. J. Chang. 1998. Molecular epidemiology and trends of HIV-1 subtypes in Taiwan. J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 19:393-402.
5. Debyser, Z., E. Van Wijngaerden, K. Van Laethem, K. Beuselinck, M. Reynders, E. De Clercq, J. Desmyter, and A. Vandamme. 1998. Failure to quantify viral load with two of the three commercial methods in a pregnant woman harboring an HIV type 1 subtype G strain. AIDS Res. Hum. Retrovir. 14: 453-459.
6. Engelbrecht, S., and E. J. van Rensburg. 1995. Detection of Southern African human immunodeficiency virus type 1 subtypes by polymerase chain reaction: evaluation of different primer pairs and conditions. J. Virol. Methods 55:391-400.
7. Hammond, J., B. A. Larder, R. F. Schinazi, and J. W. Mellors. 1997. Mutations in retroviral gene associated with drug resistance. In Human retroviruses and AIDS 1997: a compilation and analysis of nucleic acid and amino acid sequences. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, N.Mex.
8. Hu, D. J., T. J. Dondero, M. A. Rayfield, J. R. George, G. Schochetman, H. W. Jaffe, C. C. Luo, M. L. Kalish, B. G. Weniger, C. P. Pau, C. A. Schable, and J. W. Curran. 1996. The emerging genetic diversity of HIV: the importance of global surveillance for diagnostics, research, and prevention. JAMA 275:210-216.
9. Hu, W. S., and H. M. Temin. 1990. Retroviral recombination and reverse transcription. Science 250:1227-1233.
10. Kumar, S., K. Tamura, and M. Nei. 1993. MEGA: molecular evolutionary genetic analysis, version 1.01. The Pennsylvania State University, University Park.
11. Kwok, S., and R. Higuchi. 1989. Avoiding false positives with PCR. Nature 339:237-238.
12. Lee, C. N., M. Y. Chen, H. S. Lin, M. C. Lee, C. C. Luo, S. J. Twu, R. Y. Lin, and C. Y. Chuang. 1998. HIV type 1 env subtype A variants in Taiwan. AIDS Res. Hum. Retrovir. 9:807-809.
13. Lee, C. N., M. Y. Chen, W. S. Fan, S. J. Twu, and R. Y. Lin. 1999. Domestic transmission of HIV type 1 subtype G strains in Taiwan. AIDS Res. Hum. Retrovir. 15:1137-1140.
14. Leitner, T. 1996. Genetic subtypes of HIV-1. In Human retroviruses and AIDS 1996: a compilation and analysis of nucleic acid and amino acid sequences. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, N.Mex.
15. Li, W. H., M. Tanimura, and P. M. Sharp. 1988. Rates and dates of divergence between AIDS virus nucleotidc sequences. Mol. Biol. Evol. 5:313-330.
16. Lin, K. T., S. H. Huang, C. L. Kao, K. M. Huang, J. C. Yu, T. P. Hung, M. Y. Chou, W. T. Liu, C. T. Fang, and Y. T. Kuo. 1987. An autopsy-proved case of AIDS in Taiwan. Asian Pac. J. Allergy Immunol. 5:25-31.
17. Louwagie, J., F. E. McCutchan, M. Peeters, T. P. Brennan, E. Sanders-Buell, G. A. Eddy, G. van der Groen, K. Fransen, G.-M. Gershy-Damet, R. Deleys, and D. S. Burke. 1993. Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes. AIDS 7: 769-780.
18. Luciw, P. A. 1996. Human immunodeficiency viruses and their replication, p. 1881-1952. In B. N. Fields, D. M. Knipe, P. M. Howley, R. M. Chanock, J. L. Melnick, T. P. Monath, B. Roizman, and S. E. Straus (ed.), Fields virology, 3rd ed. Lippincott-Raven Publishers, Philadelphia, Pa.
19. McCutchan, F. E., M. O. Salminen, J. K. Carr, and D. S. Burke. 1996. HIV-1 genetic diversity. AIDS 10:S13-S20.
20. Myers, G. 1993. Assimilating HIV sequences. AIDS Res. Hum. Retrovir. 9: 697-702.
21. Ou, C. Y., S. Kwok, S. W. Mitchell, D. H. Mack, J. J. Sninsky, J. W. Krebs, P. Feorino, D. Warfield, and G. Schochetman. 1988. DNA amplification for direct detection of HIV-1 in DNA of peripheral blood mononuclear cells. Science 239:295-297.
22. Ou, C. Y., Y. Takebe, B. G. Weniger, C. C. Luo, M. L. Kalish, W. Auwanit, S. Yamazaki, H. D. Gayle, N. L. Young, and G. Schochetman. 1993. Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand. Lancet 341:1171-1174.
23. Palmer, S., A. Alaeus, J. Albert, and S. Cox. 1998. Drug susceptibility of subtypes A, B, C, D, and E human immunodeficiency virus type 1 primary isolates. AIDS Res. Hum. Retrovir. 14:157-162.
24. Simon, F., P. Mauclere, P. Roques, I. Loussert-Ajaka, M. C. Muller-Trutwin, S. Saragosti, M. C. Georges-Courbot, F. Barre-Sinoussi, and F. Brun-Vezinet. 1998. Identification of a new human immunodeficiency virus type 1 distinct from group M and group O. Nat. Med. 4:1032-1037.
25. Strebel, K. 1996. Structure and function of HIV-1 Vpu. In Human retroviruses and AIDS 1996: a compilation and analysis of nucleic acid and amino acid sequences. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, N.Mex.
26. Weniger, B. G., K. Limpakarnjanarat, K. Ungchusak, S. Thanprasertsuk, K. Choopanya, S. Vanichseni, T. Uneklabh, P. Thongcharoen, and C. Wasi. 1991. The epidemiology of HIV infection and AIDS in Thailand. AIDS 5: S71-S85.