메뉴 건너뛰기




Volumn 6, Issue 1, 2013, Pages

Structurally differentiated cis-elements that interact with PU.1 are functionally distinguishable in acute promyelocytic leukemia

Author keywords

Acute promyelocytic leukemia; ChIP seq; cis element; PML RAR ; PU.1

Indexed keywords

CIS ACTING ELEMENT; LUCIFERASE; PROMYELOCYTIC LEUKEMIA PROTEIN; TRANSCRIPTION FACTOR PU 1;

EID: 84875484925     PISSN: None     EISSN: 17568722     Source Type: Journal    
DOI: 10.1186/1756-8722-6-25     Document Type: Article
Times cited : (11)

References (45)
  • 1
    • 83855163414 scopus 로고    scopus 로고
    • Cis-regulatory elements: Molecular mechanisms and evolutionary processes underlying divergence
    • 10.1038/nri3362
    • Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence. Wittkopp PJ, Kalay G, Nat Rev Genet 2012 13 1 59 69 10.1038/nri3362
    • (2012) Nat Rev Genet , vol.13 , Issue.1 , pp. 59-69
    • Wittkopp, P.J.1    Kalay, G.2
  • 2
    • 0037315894 scopus 로고    scopus 로고
    • Disruption of differentiation in human cancer: AML shows the way
    • 12563308
    • Disruption of differentiation in human cancer: AML shows the way. Tenen DG, Nat Rev Cancer 2003 3 2 89 101 12563308
    • (2003) Nat Rev Cancer , vol.3 , Issue.2 , pp. 89-101
    • Tenen, D.G.1
  • 3
    • 33645734361 scopus 로고    scopus 로고
    • ATRA resolves the differentiation block in t(15;17) acute myeloid leukemia by restoring PU.1 expression
    • 16352814
    • ATRA resolves the differentiation block in t(15;17) acute myeloid leukemia by restoring PU.1 expression. Mueller BU, Pabst T, Fos J, Petkovic V, Fey MF, Asou N, Buergi U, Tenen DG, Blood 2006 107 4 3330 3338 16352814
    • (2006) Blood , vol.107 , Issue.4 , pp. 3330-3338
    • Mueller, B.U.1    Pabst, T.2    Fos, J.3    Petkovic, V.4    Fey, M.F.5    Asou, N.6    Buergi, U.7    Tenen, D.G.8
  • 4
    • 84860606995 scopus 로고    scopus 로고
    • The significance of low PU.1 expression in patients with acute promyelocytic leukemia
    • 10.1186/1756-8722-5-22 22569057
    • The significance of low PU.1 expression in patients with acute promyelocytic leukemia. Zhu X, Zhang H, Qian M, Zhao X, Yang W, Wang P, Zhang J, Wang K, J Hematol Oncol 2012 5 22 10.1186/1756-8722-5-22 22569057
    • (2012) J Hematol Oncol , vol.5 , pp. 22
    • Zhu, X.1    Zhang, H.2    Qian, M.3    Zhao, X.4    Yang, W.5    Wang, P.6    Zhang, J.7    Wang, K.8
  • 5
    • 24644482422 scopus 로고    scopus 로고
    • Reduced PU.1 expression causes myeloid progenitor expansion and increased leukemia penetrance in mice expressing PML-RARalpha
    • 10.1073/pnas.0504247102 16113082
    • Reduced PU.1 expression causes myeloid progenitor expansion and increased leukemia penetrance in mice expressing PML-RARalpha. Walter MJ, Park JS, Ries RE, Lau SK, McLellan M, Jaeger S, Wilson RK, Mardis ER, Ley TJ, Proc Natl Acad Sci USA 2005 102 12513 12518 10.1073/pnas.0504247102 16113082
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 12513-12518
    • Walter, M.J.1    Park, J.S.2    Ries, R.E.3    Lau, S.K.4    McLellan, M.5    Jaeger, S.6    Wilson, R.K.7    Mardis, E.R.8    Ley, T.J.9
  • 6
    • 76249120854 scopus 로고    scopus 로고
    • PML/RARalpha targets promoter regions containing PU.1 consensus and RARE half sites in acute promyelocytic leukemia
    • 10.1016/j.ccr.2009.12.045 20159610
    • PML/RARalpha targets promoter regions containing PU.1 consensus and RARE half sites in acute promyelocytic leukemia. Wang K, Wang P, Shi J, Zhu X, He M, Jia X, Yang X, Qiu F, Jin W, Qian M, Cancer Cell 2010 17 186 197 10.1016/j.ccr.2009.12.045 20159610
    • (2010) Cancer Cell , vol.17 , pp. 186-197
    • Wang, K.1    Wang, P.2    Shi, J.3    Zhu, X.4    He, M.5    Jia, X.6    Yang, X.7    Qiu, F.8    Jin, W.9    Qian, M.10
  • 7
    • 0029793902 scopus 로고    scopus 로고
    • PU.1 (Spi-1) and C/EBP alpha regulate the granulocyte colony-stimulating factor receptor promoter in myeloid cells
    • 8695841
    • PU.1 (Spi-1) and C/EBP alpha regulate the granulocyte colony-stimulating factor receptor promoter in myeloid cells. Smith LT, Hohaus S, Gonzalez DA, Dziennis SE, Tenen DG, Blood 1996 88 1234 1247 8695841
    • (1996) Blood , vol.88 , pp. 1234-1247
    • Smith, L.T.1    Hohaus, S.2    Gonzalez, D.A.3    Dziennis, S.E.4    Tenen, D.G.5
  • 8
    • 0029121366 scopus 로고
    • PU.1 (Spi-1) and C/EBP alpha regulate expression of the granulocyte-macrophage colony-stimulating factor receptor alpha gene
    • 7565736
    • PU.1 (Spi-1) and C/EBP alpha regulate expression of the granulocyte-macrophage colony-stimulating factor receptor alpha gene. Hohaus S, Petrovick MS, Voso MT, Sun Z, Zhang DE, Tenen DG, Mol Cell Biol 1995 15 5830 5845 7565736
    • (1995) Mol Cell Biol , vol.15 , pp. 5830-5845
    • Hohaus, S.1    Petrovick, M.S.2    Voso, M.T.3    Sun, Z.4    Zhang, D.E.5    Tenen, D.G.6
  • 9
    • 0028120907 scopus 로고
    • The macrophage transcription factor PU.1 directs tissue-specific expression of the macrophage colony-stimulating factor receptor
    • 8264604
    • The macrophage transcription factor PU.1 directs tissue-specific expression of the macrophage colony-stimulating factor receptor. Zhang DE, Hetherington CJ, Chen HM, Tenen DG, Mol Cell Biol 1994 14 373 381 8264604
    • (1994) Mol Cell Biol , vol.14 , pp. 373-381
    • Zhang, D.E.1    Hetherington, C.J.2    Chen, H.M.3    Tenen, D.G.4
  • 10
    • 0025246676 scopus 로고
    • The macrophage and B cell-specific transcription factor PU.1 is related to the ets oncogene
    • 10.1016/0092-8674(90)90219-5 2180582
    • The macrophage and B cell-specific transcription factor PU.1 is related to the ets oncogene. Klemsz MJ, McKercher SR, Celada A, Van Beveren C, Maki RA, Cell 1990 61 113 124 10.1016/0092-8674(90)90219-5 2180582
    • (1990) Cell , vol.61 , pp. 113-124
    • Klemsz, M.J.1    McKercher, S.R.2    Celada, A.3    Van Beveren, C.4    Maki, R.A.5
  • 13
    • 0027151933 scopus 로고
    • Mouse beta-globin DNA-binding protein B1 is identical to a proto-oncogene, the transcription factor Spi-1/PU.1, and is restricted in expression to hematopoietic cells and the testis
    • 8474451
    • Mouse beta-globin DNA-binding protein B1 is identical to a proto-oncogene, the transcription factor Spi-1/PU.1, and is restricted in expression to hematopoietic cells and the testis. Galson DL, Hensold JO, Bishop TR, Schalling M, D'Andrea AD, Jones C, Auron PE, Housman DE, Mol Cell Biol 1993 13 2929 2941 8474451
    • (1993) Mol Cell Biol , vol.13 , pp. 2929-2941
    • Galson, D.L.1    Hensold, J.O.2    Bishop, T.R.3    Schalling, M.4    D'Andrea, A.D.5    Jones, C.6    Auron, P.E.7    Housman, D.E.8
  • 14
    • 18744377491 scopus 로고    scopus 로고
    • Stem Cell Fate Specification: Role of Master Regulatory Switch Transcription Factor PU.1 in Differential Hematopoiesis
    • 10.1089/scd.2005.14.140 15910240
    • Stem Cell Fate Specification: Role of Master Regulatory Switch Transcription Factor PU.1 in Differential Hematopoiesis. Gangenahalli GU, Gupta P, Saluja D, Verma YK, Kishore V, Chandra R, Sharma RK, Ravindranath T, Stem Cells Dev 2005 14 140 152 10.1089/scd.2005.14.140 15910240
    • (2005) Stem Cells Dev , vol.14 , pp. 140-152
    • Gangenahalli, G.U.1    Gupta, P.2    Saluja, D.3    Verma, Y.K.4    Kishore, V.5    Chandra, R.6    Sharma, R.K.7    Ravindranath, T.8
  • 15
    • 0033527645 scopus 로고    scopus 로고
    • Critical flanking sequences of PU.1 binding sites in myeloid-specific promoters
    • 10.1074/jbc.274.45.32453 10542290
    • Critical flanking sequences of PU.1 binding sites in myeloid-specific promoters. Li SL, Schlegel W, Valente AJ, Clark RA, J Biol Chem 1999 274 32453 32460 10.1074/jbc.274.45.32453 10542290
    • (1999) J Biol Chem , vol.274 , pp. 32453-32460
    • Li, S.L.1    Schlegel, W.2    Valente, A.J.3    Clark, R.A.4
  • 17
    • 0029907643 scopus 로고    scopus 로고
    • Cell specific expression of human Bruton's agammaglobulinemia tyrosine kinase gene (Btk) is regulated by Sp1- and Spi-1/PU.1-family members
    • 8934542
    • Cell specific expression of human Bruton's agammaglobulinemia tyrosine kinase gene (Btk) is regulated by Sp1- and Spi-1/PU.1-family members. Muller S, Sideras P, Smith CI, Xanthopoulos KG, Oncogene 1996 13 1955 1964 8934542
    • (1996) Oncogene , vol.13 , pp. 1955-1964
    • Muller, S.1    Sideras, P.2    Smith, C.I.3    Xanthopoulos, K.G.4
  • 18
    • 0032533229 scopus 로고    scopus 로고
    • Cloning and characterization of the human interleukin-3 (IL-3)/IL-5/ granulocyte-macrophage colony-stimulating factor receptor betac gene: Regulation by Ets family members
    • 9808557
    • Cloning and characterization of the human interleukin-3 (IL-3)/IL-5/ granulocyte-macrophage colony-stimulating factor receptor betac gene: regulation by Ets family members. van Dijk TB, Baltus B, Caldenhoven E, Handa H, Raaijmakers JA, Lammers JW, Koenderman L, de Groot RP, Blood 1998 92 3636 3646 9808557
    • (1998) Blood , vol.92 , pp. 3636-3646
    • Van Dijk, T.B.1    Baltus, B.2    Caldenhoven, E.3    Handa, H.4    Raaijmakers, J.A.5    Lammers, J.W.6    Koenderman, L.7    De Groot, R.P.8
  • 19
    • 0033485623 scopus 로고    scopus 로고
    • Recruitment of CREB-binding protein by PU.1, IFN-regulatory factor-1, and the IFN consensus sequence-binding protein is necessary for IFN-gamma-induced p67phox and gp91phox expression
    • 10570299
    • Recruitment of CREB-binding protein by PU.1, IFN-regulatory factor-1, and the IFN consensus sequence-binding protein is necessary for IFN-gamma-induced p67phox and gp91phox expression. Eklund EA, Kakar R, J Immunol 1999 163 6095 6105 10570299
    • (1999) J Immunol , vol.163 , pp. 6095-6105
    • Eklund, E.A.1    Kakar, R.2
  • 20
    • 0037097733 scopus 로고    scopus 로고
    • Multiple PU.1 sites cooperate in the regulation of p40(phox) transcription during granulocytic differentiation of myeloid cells
    • 10.1182/blood.V99.12.4578 12036891
    • Multiple PU.1 sites cooperate in the regulation of p40(phox) transcription during granulocytic differentiation of myeloid cells. Li SL, Valente AJ, Qiang M, Schlegel W, Gamez M, Clark RA, Blood 2002 99 4578 4587 10.1182/blood.V99.12.4578 12036891
    • (2002) Blood , vol.99 , pp. 4578-4587
    • Li, S.L.1    Valente, A.J.2    Qiang, M.3    Schlegel, W.4    Gamez, M.5    Clark, R.A.6
  • 23
    • 25444493843 scopus 로고    scopus 로고
    • Reverse transcriptional profiling: Non-correspondence of transcript level variation and proximal promoter polymorphism
    • 10.1186/1471-2164-6-110 16107220
    • Reverse transcriptional profiling: non-correspondence of transcript level variation and proximal promoter polymorphism. Brown RP, Feder ME, BMC Genomics 2005 6 110 10.1186/1471-2164-6-110 16107220
    • (2005) BMC Genomics , vol.6 , pp. 110
    • Brown, R.P.1    Feder, M.E.2
  • 24
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • 17304246
    • The evolutionary significance of cis-regulatory mutations. Wray GA, Nat Rev Genet 2007 8 206 216 17304246
    • (2007) Nat Rev Genet , vol.8 , pp. 206-216
    • Wray, G.A.1
  • 28
    • 40849085514 scopus 로고    scopus 로고
    • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription
    • 10.1016/j.cell.2008.01.018 18358809
    • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, Carroll JS, Liu XS, Brown M, Cell 2008 132 958 970 10.1016/j.cell.2008. 01.018 18358809
    • (2008) Cell , vol.132 , pp. 958-970
    • Lupien, M.1    Eeckhoute, J.2    Meyer, C.A.3    Wang, Q.4    Zhang, Y.5    Li, W.6    Carroll, J.S.7    Liu, X.S.8    Brown, M.9
  • 30
    • 70449675049 scopus 로고    scopus 로고
    • Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy
    • 10.1016/j.molcel.2009.11.001 19941826
    • Discovering hematopoietic mechanisms through genome-wide analysis of GATA factor chromatin occupancy. Fujiwara T, O'Geen H, Keles S, Blahnik K, Linnemann AK, Kang YA, Choi K, Farnham PJ, Bresnick EH, Mol Cell 2009 36 667 681 10.1016/j.molcel.2009.11.001 19941826
    • (2009) Mol Cell , vol.36 , pp. 667-681
    • Fujiwara, T.1    O'Geen, H.2    Keles, S.3    Blahnik, K.4    Linnemann, A.K.5    Kang, Y.A.6    Choi, K.7    Farnham, P.J.8    Bresnick, E.H.9
  • 31
    • 57149096220 scopus 로고    scopus 로고
    • Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
    • 10.1101/gr.078519.108 18787082
    • Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding. Robertson AG, Bilenky M, Tam A, Zhao Y, Zeng T, Thiessen N, Cezard T, Fejes AP, Wederell ED, Cullum R, Genome Res 2008 18 1906 1917 10.1101/gr.078519.108 18787082
    • (2008) Genome Res , vol.18 , pp. 1906-1917
    • Robertson, A.G.1    Bilenky, M.2    Tam, A.3    Zhao, Y.4    Zeng, T.5    Thiessen, N.6    Cezard, T.7    Fejes, A.P.8    Wederell, E.D.9    Cullum, R.10
  • 32
    • 33750577456 scopus 로고    scopus 로고
    • Proximal genomic localization of STAT1 binding and regulated transcriptional activity
    • 10.1186/1471-2164-7-254 17032459
    • Proximal genomic localization of STAT1 binding and regulated transcriptional activity. Wormald S, Hilton DJ, Smyth GK, Speed TP, BMC Genomics 2006 7 254 10.1186/1471-2164-7-254 17032459
    • (2006) BMC Genomics , vol.7 , pp. 254
    • Wormald, S.1    Hilton, D.J.2    Smyth, G.K.3    Speed, T.P.4
  • 34
    • 80052644160 scopus 로고    scopus 로고
    • AMD, an automated motif discovery tool using stepwise refinement of gapped consensuses
    • 10.1371/journal.pone.0024576 21931761
    • AMD, an automated motif discovery tool using stepwise refinement of gapped consensuses. Shi J, Yang W, Chen M, Du Y, Zhang J, Wang K, PLoS One 2011 6 24576 10.1371/journal.pone.0024576 21931761
    • (2011) PLoS One , vol.6 , pp. 524576
    • Shi, J.1    Yang, W.2    Chen, M.3    Du, Y.4    Zhang, J.5    Wang, K.6
  • 37
    • 84865852567 scopus 로고    scopus 로고
    • Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
    • 10.1101/gr.139105.112 22955990
    • Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Genome Res 2012 22 1798 1812 10.1101/gr.139105.112 22955990
    • (2012) Genome Res , vol.22 , pp. 1798-1812
    • Wang, J.1    Zhuang, J.2    Iyer, S.3    Lin, X.4    Whitfield, T.W.5    Greven, M.C.6    Pierce, B.G.7    Dong, X.8    Kundaje, A.9    Cheng, Y.10
  • 38
    • 41349089522 scopus 로고    scopus 로고
    • Gene regulation in the third dimension
    • 10.1126/science.1152850 18369139
    • Gene regulation in the third dimension. Dekker J, Science 2008 319 1793 1794 10.1126/science.1152850 18369139
    • (2008) Science , vol.319 , pp. 1793-1794
    • Dekker, J.1
  • 39
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • 10.1038/nature11279 22955621
    • The long-range interaction landscape of gene promoters. Sanyal A, Lajoie BR, Jain G, Dekker J, Nature 2012 489 109 113 10.1038/nature11279 22955621
    • (2012) Nature , vol.489 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 40
    • 22144486551 scopus 로고    scopus 로고
    • Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
    • 10.1016/j.cell.2005.05.008 16009131
    • Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Carroll JS, Liu XS, Brodsky AS, Li W, Meyer CA, Szary AJ, Eeckhoute J, Shao W, Hestermann EV, Geistlinger TR, Cell 2005 122 33 43 10.1016/j.cell.2005.05.008 16009131
    • (2005) Cell , vol.122 , pp. 33-43
    • Carroll, J.S.1    Liu, X.S.2    Brodsky, A.S.3    Li, W.4    Meyer, C.A.5    Szary, A.J.6    Eeckhoute, J.7    Shao, W.8    Hestermann, E.V.9    Geistlinger, T.R.10
  • 41
    • 34250363896 scopus 로고    scopus 로고
    • Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer
    • 10.1158/0008-5472.CAN-06-3696 17510434
    • Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer. Lin Z, Reierstad S, Huang CC, Bulun SE, Cancer Res 2007 67 5017 5024 10.1158/0008-5472.CAN-06-3696 17510434
    • (2007) Cancer Res , vol.67 , pp. 5017-5024
    • Lin, Z.1    Reierstad, S.2    Huang, C.C.3    Bulun, S.E.4
  • 42
    • 77954478335 scopus 로고    scopus 로고
    • PU.1 binds to a distal regulatory element that is necessary for B cell-specific expression of CIITA
    • 10.4049/jimmunol.1000079 20363966
    • PU.1 binds to a distal regulatory element that is necessary for B cell-specific expression of CIITA. Yoon H, Boss JM, J Immunol 2010 184 5018 5028 10.4049/jimmunol.1000079 20363966
    • (2010) J Immunol , vol.184 , pp. 5018-5028
    • Yoon, H.1    Boss, J.M.2
  • 45
    • 10744226888 scopus 로고    scopus 로고
    • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
    • 10.1016/S0092-8674(04)00127-8 14980218
    • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ, Cell 2004 116 499 509 10.1016/S0092- 8674(04)00127-8 14980218
    • (2004) Cell , vol.116 , pp. 499-509
    • Cawley, S.1    Bekiranov, S.2    Ng, H.H.3    Kapranov, P.4    Sekinger, E.A.5    Kampa, D.6    Piccolboni, A.7    Sementchenko, V.8    Cheng, J.9    Williams, A.J.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.