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Volumn 8, Issue 3, 2013, Pages

Step Detection in Single-Molecule Real Time Trajectories Embedded in Correlated Noise

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; BAYES THEOREM; CALCULATION; CONTROLLED STUDY; HISTOGRAM; MATHEMATICAL COMPUTING; MAXIMUM LIKELIHOOD METHOD; NOISE; QUANTITATIVE ANALYSIS; SINGLE MOLECULE REAL TIME TRAJECTORY; STATISTICAL ANALYSIS; STATISTICAL DISTRIBUTION; STATISTICAL MODEL;

EID: 84875341697     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0059279     Document Type: Article
Times cited : (12)

References (44)
  • 1
    • 0032484096 scopus 로고    scopus 로고
    • Single-molecule enzymatic dynamics
    • Lu HP, Xun L, Xie XS, (1998) Single-molecule enzymatic dynamics. Science 282: 1877-1882.
    • (1998) Science , vol.282 , pp. 1877-1882
    • Lu, H.P.1    Xun, L.2    Xie, X.S.3
  • 2
    • 0033548657 scopus 로고    scopus 로고
    • Illuminating single molecules in condensed matter
    • Moerner WE, Orrit M, (1999) Illuminating single molecules in condensed matter. Science 283: 1670-1676.
    • (1999) Science , vol.283 , pp. 1670-1676
    • Moerner, W.E.1    Orrit, M.2
  • 3
    • 0033548686 scopus 로고    scopus 로고
    • Fluorescence spectroscopy of single biomolecules
    • Weiss S, (1999) Fluorescence spectroscopy of single biomolecules. Science 283: 1676-1683.
    • (1999) Science , vol.283 , pp. 1676-1683
    • Weiss, S.1
  • 5
    • 0033548713 scopus 로고    scopus 로고
    • Nanoscale science of single molecules using local probes
    • Gimzewski JK, Joachim C, (1999) Nanoscale science of single molecules using local probes. Science 283: 1683-1688.
    • (1999) Science , vol.283 , pp. 1683-1688
    • Gimzewski, J.K.1    Joachim, C.2
  • 8
    • 0037832404 scopus 로고    scopus 로고
    • Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization
    • Yildiz A, Forkey JN, McKinney SA, Ha T, Goldman YE, et al. (2003) Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science 300: 2061-2065.
    • (2003) Science , vol.300 , pp. 2061-2065
    • Yildiz, A.1    Forkey, J.N.2    McKinney, S.A.3    Ha, T.4    Goldman, Y.E.5
  • 9
    • 0037333239 scopus 로고    scopus 로고
    • Rotary protein motors
    • Oster G, Wang H, (2003) Rotary protein motors. Trends Cell Biol 13: 114-121.
    • (2003) Trends Cell Biol , vol.13 , pp. 114-121
    • Oster, G.1    Wang, H.2
  • 11
    • 41149155366 scopus 로고    scopus 로고
    • Following translation by single ribosomes one codon at a time
    • Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, et al. (2008) Following translation by single ribosomes one codon at a time. Nature 452: 598-603.
    • (2008) Nature , vol.452 , pp. 598-603
    • Wen, J.D.1    Lancaster, L.2    Hodges, C.3    Zeri, A.C.4    Yoshimura, S.H.5
  • 12
    • 79951703348 scopus 로고    scopus 로고
    • Revisiting the central dogma one molecule at a time
    • Bustamante C, Cheng W, Mejia YX, (2011) Revisiting the central dogma one molecule at a time. Cell 144: 480-497.
    • (2011) Cell , vol.144 , pp. 480-497
    • Bustamante, C.1    Cheng, W.2    Mejia, Y.X.3
  • 13
    • 0027453868 scopus 로고
    • Direct observation of kinesin stepping by optical trapping interferometry
    • Svoboda K, Schmidt CF, Schnapp BJ, Block SM, (1993) Direct observation of kinesin stepping by optical trapping interferometry. Nature 365: 721-727.
    • (1993) Nature , vol.365 , pp. 721-727
    • Svoboda, K.1    Schmidt, C.F.2    Schnapp, B.J.3    Block, S.M.4
  • 15
    • 30144436268 scopus 로고    scopus 로고
    • RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP
    • Dumont S, Cheng W, Serebrov V, Beran RK, Tinoco I Jr, et al. (2006) RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP. Nature 439: 105-108.
    • (2006) Nature , vol.439 , pp. 105-108
    • Dumont, S.1    Cheng, W.2    Serebrov, V.3    Beran, R.K.4    Tinoco Jr., I.5
  • 16
    • 1342325553 scopus 로고    scopus 로고
    • Cytoplasmic dynein functions as a gear in response to load
    • Mallik R, Carter BC, Lex SA, King SJ, Gross SP, (2004) Cytoplasmic dynein functions as a gear in response to load. Nature 427: 649-652.
    • (2004) Nature , vol.427 , pp. 649-652
    • Mallik, R.1    Carter, B.C.2    Lex, S.A.3    King, S.J.4    Gross, S.P.5
  • 18
    • 19644377414 scopus 로고    scopus 로고
    • Mechanics of the kinesin step
    • Carter NJ, Cross RA, (2005) Mechanics of the kinesin step. Nature 435: 308-312.
    • (2005) Nature , vol.435 , pp. 308-312
    • Carter, N.J.1    Cross, R.A.2
  • 20
    • 33751238824 scopus 로고    scopus 로고
    • Extracting dwell time sequences from processive molecular motor data
    • Milescu LS, Yildiz A, Selvin PR, Sachs F, (2006) Extracting dwell time sequences from processive molecular motor data. Biophys J 91: 3135-3150.
    • (2006) Biophys J , vol.91 , pp. 3135-3150
    • Milescu, L.S.1    Yildiz, A.2    Selvin, P.R.3    Sachs, F.4
  • 21
    • 78649813624 scopus 로고    scopus 로고
    • Improved hidden Markov models for molecular motors, part 1: basic theory
    • Mullner FE, Syed S, Selvin PR, Sigworth FJ, (2010) Improved hidden Markov models for molecular motors, part 1: basic theory. Biophys J 99: 3684-3695.
    • (2010) Biophys J , vol.99 , pp. 3684-3695
    • Mullner, F.E.1    Syed, S.2    Selvin, P.R.3    Sigworth, F.J.4
  • 22
    • 78649818686 scopus 로고    scopus 로고
    • Improved hidden Markov models for molecular motors, part 2: extensions and application to experimental data
    • Syed S, Mullner FE, Selvin PR, Sigworth FJ, (2010) Improved hidden Markov models for molecular motors, part 2: extensions and application to experimental data. Biophys J 99: 3696-3703.
    • (2010) Biophys J , vol.99 , pp. 3696-3703
    • Syed, S.1    Mullner, F.E.2    Selvin, P.R.3    Sigworth, F.J.4
  • 23
    • 66049088252 scopus 로고    scopus 로고
    • A point process driven multiple change point model: a robust resistant approach
    • Arunajadai SG, (2009) A point process driven multiple change point model: a robust resistant approach. Math Biosci 220: 57-71.
    • (2009) Math Biosci , vol.220 , pp. 57-71
    • Arunajadai, S.G.1
  • 24
    • 70349617436 scopus 로고    scopus 로고
    • RNA unwinding by NS3 helicase: a statistical approach
    • Arunajadai SG, (2009) RNA unwinding by NS3 helicase: a statistical approach. PLoS One 4: e6937.
    • (2009) PLoS One , vol.4
    • Arunajadai, S.G.1
  • 25
    • 33746747438 scopus 로고    scopus 로고
    • Analysis of single-molecule FRET trajectories using hidden Markov modeling
    • McKinney SA, Joo C, Ha T, (2006) Analysis of single-molecule FRET trajectories using hidden Markov modeling. Biophys J 91: 1941-1951.
    • (2006) Biophys J , vol.91 , pp. 1941-1951
    • McKinney, S.A.1    Joo, C.2    Ha, T.3
  • 26
    • 37749047135 scopus 로고    scopus 로고
    • A comparison of step-detection methods: how well can you do?
    • Carter BC, Vershinin M, Gross SP, (2008) A comparison of step-detection methods: how well can you do? Biophys J 94: 306-319.
    • (2008) Biophys J , vol.94 , pp. 306-319
    • Carter, B.C.1    Vershinin, M.2    Gross, S.P.3
  • 27
    • 33746253688 scopus 로고    scopus 로고
    • Single-molecule analysis of dynein processivity and stepping behavior
    • Reck-Peterson SL, Yildiz A, Carter AP, Gennerich A, Zhang N, et al. (2006) Single-molecule analysis of dynein processivity and stepping behavior. Cell 126: 335-348.
    • (2006) Cell , vol.126 , pp. 335-348
    • Reck-Peterson, S.L.1    Yildiz, A.2    Carter, A.P.3    Gennerich, A.4    Zhang, N.5
  • 28
    • 34547595373 scopus 로고    scopus 로고
    • Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase
    • Myong S, Bruno MM, Pyle AM, Ha T, (2007) Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase. Science 317: 513-516.
    • (2007) Science , vol.317 , pp. 513-516
    • Myong, S.1    Bruno, M.M.2    Pyle, A.M.3    Ha, T.4
  • 29
    • 84862991581 scopus 로고    scopus 로고
    • Elastic coupling between RNA degradation and unwinding by an exoribonuclease
    • Lee G, Bratkowski MA, Ding F, Ke A, Ha T, (2012) Elastic coupling between RNA degradation and unwinding by an exoribonuclease. Science 336: 1726-1729.
    • (2012) Science , vol.336 , pp. 1726-1729
    • Lee, G.1    Bratkowski, M.A.2    Ding, F.3    Ke, A.4    Ha, T.5
  • 33
    • 3242699635 scopus 로고    scopus 로고
    • Fast, DNA-sequence independent translocation by FtsK in a single-molecule experiment
    • Saleh OA, Perals C, Barre FX, Allemand JF, (2004) Fast, DNA-sequence independent translocation by FtsK in a single-molecule experiment. EMBO J 23: 2430-2439.
    • (2004) EMBO J , vol.23 , pp. 2430-2439
    • Saleh, O.A.1    Perals, C.2    Barre, F.X.3    Allemand, J.F.4
  • 34
    • 0031031958 scopus 로고    scopus 로고
    • Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase
    • Ali JA, Lohman TM, (1997) Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase. Science 275: 377-380.
    • (1997) Science , vol.275 , pp. 377-380
    • Ali, J.A.1    Lohman, T.M.2
  • 35
    • 0000784583 scopus 로고    scopus 로고
    • Universal 1/f noise from dissipative self-organized criticality models
    • De Los Rios P, Zhang YC, (1999) Universal 1/f noise from dissipative self-organized criticality models. Physical Review Letters 82: 472-475.
    • (1999) Physical Review Letters , vol.82 , pp. 472-475
    • de Los Rios, P.1    Zhang, Y.C.2
  • 37
    • 77956300228 scopus 로고    scopus 로고
    • Use of tapered amplifier diode laser for biological-friendly high-resolution optical trapping
    • Cheng W, Hou X, Ye F, (2010) Use of tapered amplifier diode laser for biological-friendly high-resolution optical trapping. Opt Lett 35: 2988-2990.
    • (2010) Opt Lett , vol.35 , pp. 2988-2990
    • Cheng, W.1    Hou, X.2    Ye, F.3
  • 38
    • 80053144268 scopus 로고    scopus 로고
    • Single-base pair unwinding and asynchronous RNA release by the hepatitis C virus NS3 helicase
    • Cheng W, Arunajadai SG, Moffitt JR, Tinoco I Jr, Bustamante C, (2011) Single-base pair unwinding and asynchronous RNA release by the hepatitis C virus NS3 helicase. Science 333: 1746-1749.
    • (2011) Science , vol.333 , pp. 1746-1749
    • Cheng, W.1    Arunajadai, S.G.2    Moffitt, J.R.3    Tinoco Jr., I.4    Bustamante, C.5
  • 40
    • 0016611065 scopus 로고
    • Inefficiency of Least-Squares
    • Bloomfield P, Watson GS, (1975) Inefficiency of Least-Squares. Biometrika 62: 121-128.
    • (1975) Biometrika , vol.62 , pp. 121-128
    • Bloomfield, P.1    Watson, G.S.2
  • 41
    • 24944583015 scopus 로고    scopus 로고
    • Revisiting simple linear regression with autocorrelated errors
    • Lee J, Lund R, (2004) Revisiting simple linear regression with autocorrelated errors. Biometrika 91: 240-245.
    • (2004) Biometrika , vol.91 , pp. 240-245
    • Lee, J.1    Lund, R.2
  • 43
    • 84947352928 scopus 로고
    • Application of Least Squares Regression to Relationships Containing Autocorrelated Error Terms
    • Cochrane D, Orcutt GH, (1949) Application of Least Squares Regression to Relationships Containing Autocorrelated Error Terms. Journal of the American Statistical Association 44: 32-61.
    • (1949) Journal of the American Statistical Association , vol.44 , pp. 32-61
    • Cochrane, D.1    Orcutt, G.H.2


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