-
1
-
-
0026512861
-
The patch clamp technique
-
Neher, E., and B. Sakmann. 1992. The patch clamp technique. Sci. Am. 266:44-51.
-
(1992)
Sci. Am.
, vol.266
, pp. 44-51
-
-
Neher, E.1
Sakmann, B.2
-
2
-
-
0027453868
-
Direct observation of kinesin stepping by optical trapping interferometry
-
Svoboda, K., C. F. Schmidt, B. J. Schnapp, and S. M. Block. 1993. Direct observation of kinesin stepping by optical trapping interferometry. Nature. 365:721-727.
-
(1993)
Nature
, vol.365
, pp. 721-727
-
-
Svoboda, K.1
Schmidt, C.F.2
Schnapp, B.J.3
Block, S.M.4
-
3
-
-
0029879228
-
Direct observation of single kinesin molecules moving along microtubules
-
Vale, R. D., T. Funatsu, D. W. Pierce, L. Romberg, Y. Harada, and T. Yanagida. 1996. Direct observation of single kinesin molecules moving along microtubules. Nature. 380:451-453.
-
(1996)
Nature
, vol.380
, pp. 451-453
-
-
Vale, R.D.1
Funatsu, T.2
Pierce, D.W.3
Romberg, L.4
Harada, Y.5
Yanagida, T.6
-
4
-
-
0033527043
-
Myosin-V is a processive actin-based motor
-
Mehta, A. D., R. S. Rock, M. Rief, J. A. Spudich, M. S. Mooseker, and R. E. Cheney. 1999. Myosin-V is a processive actin-based motor. Nature. 400:590-593.
-
(1999)
Nature
, vol.400
, pp. 590-593
-
-
Mehta, A.D.1
Rock, R.S.2
Rief, M.3
Spudich, J.A.4
Mooseker, M.S.5
Cheney, R.E.6
-
5
-
-
1342325553
-
Cytoplasmic dynein functions as a gear in response to load
-
Mallik, R., B. C. Carter, S. A. Lex, S. J. King, and S. P. Gross. 2004. Cytoplasmic dynein functions as a gear in response to load. Nature. 427:649-652.
-
(2004)
Nature
, vol.427
, pp. 649-652
-
-
Mallik, R.1
Carter, B.C.2
Lex, S.A.3
King, S.J.4
Gross, S.P.5
-
6
-
-
20344382542
-
Kinesin and dynein move a peroxisome in vivo: A tug-of-war or coordinated movement?
-
Kural, C., H. Kim, S. Syed, G. Goshima, V. I. Gelfand, and P. R. Selvin. 2005. Kinesin and dynein move a peroxisome in vivo: a tug-of-war or coordinated movement? Science. 308:1469-1472.
-
(2005)
Science
, vol.308
, pp. 1469-1472
-
-
Kural, C.1
Kim, H.2
Syed, S.3
Goshima, G.4
Gelfand, V.I.5
Selvin, P.R.6
-
7
-
-
0034111877
-
The mechanochemistry of molecular motors
-
Keller, D., and C. Bustamante. 2000. The mechanochemistry of molecular motors. Biophys. J. 78:541-556.
-
(2000)
Biophys. J.
, vol.78
, pp. 541-556
-
-
Keller, D.1
Bustamante, C.2
-
8
-
-
0037832404
-
Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5 nm localization
-
Yildiz, A., J. N. Forkey, S. A. McKinney, T. Ha, Y. E. Goldman, and P. R. Selvin. 2003. Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5 nm localization. Science. 300:2061-2065.
-
(2003)
Science
, vol.300
, pp. 2061-2065
-
-
Yildiz, A.1
Forkey, J.N.2
McKinney, S.A.3
Ha, T.4
Goldman, Y.E.5
Selvin, P.R.6
-
9
-
-
0942279641
-
Kinesin walks hand-over-hand
-
Yildiz, A., M. Tomishige, R. D. Vale, and P. R. Selvin. 2004. Kinesin walks hand-over-hand. Science. 303:676-678.
-
(2004)
Science
, vol.303
, pp. 676-678
-
-
Yildiz, A.1
Tomishige, M.2
Vale, R.D.3
Selvin, P.R.4
-
10
-
-
33746831687
-
Maximum likelihood estimation of molecular motor kinetics from staircase dwell time sequences
-
Milescu, L. S., A. Yildiz, P. R. Selvin, and F. Sachs. 2006. Maximum likelihood estimation of molecular motor kinetics from staircase dwell time sequences. Biophys. J. 91:1156-1168.
-
(2006)
Biophys. J.
, vol.91
, pp. 1156-1168
-
-
Milescu, L.S.1
Yildiz, A.2
Selvin, P.R.3
Sachs, F.4
-
11
-
-
0000459587
-
The distributions of the apparent open times and shut times in a single channel record when brief events cannot be detected
-
Hawkes, A. G., A. Jalali, and D. Colquhoun. 1990. The distributions of the apparent open times and shut times in a single channel record when brief events cannot be detected. Philos. Trans. R. Soc. Lond. B Biol. Sci. 332:511-538.
-
(1990)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.332
, pp. 511-538
-
-
Hawkes, A.G.1
Jalali, A.2
Colquhoun, D.3
-
12
-
-
0027128970
-
Asymptotic distributions of apparent open times and shut times in a single channel record allowing for the omission of brief events
-
Hawkes, A. G., A. Jalali, and D. Colquhoun. 1992. Asymptotic distributions of apparent open times and shut times in a single channel record allowing for the omission of brief events. Philos. Trans. R. Soc. Lond. B Biol. Sci. 337:383-404.
-
(1992)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.337
, pp. 383-404
-
-
Hawkes, A.G.1
Jalali, A.2
Colquhoun, D.3
-
13
-
-
0002432817
-
Generalised eigenproblems arising in aggregated Markov processes allowing for time interval omission
-
Jalali, A., and A. G. Hawkes. 1992. Generalised eigenproblems arising in aggregated Markov processes allowing for time interval omission. Adv. Appl. Probab. 24:302-321.
-
(1992)
Adv. Appl. Probab.
, vol.24
, pp. 302-321
-
-
Jalali, A.1
Hawkes, A.G.2
-
14
-
-
0030061670
-
Estimating single channel kinetic parameters from idealized patch-clamp data containing missed events
-
Qin, F., A. Auerbach, and F. Sachs. 1996. Estimating single channel kinetic parameters from idealized patch-clamp data containing missed events. Biophys. J. 70:264-280.
-
(1996)
Biophys. J.
, vol.70
, pp. 264-280
-
-
Qin, F.1
Auerbach, A.2
Sachs, F.3
-
15
-
-
0019143565
-
Single Na1 channel currents observed in cultured rat muscle cells
-
Sigworth, F. J., and E. Neher. 1980. Single Na1 channel currents observed in cultured rat muscle cells. Nature. 287:447-449.
-
(1980)
Nature
, vol.287
, pp. 447-449
-
-
Sigworth, F.J.1
Neher, E.2
-
17
-
-
0020490146
-
On the stochastic properties of bursts of single ion channel openings and of clusters of bursts
-
Colquhoun, D., and A. G. Hawkes. 1982. On the stochastic properties of bursts of single ion channel openings and of clusters of bursts. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 300:1-59.
-
(1982)
Philos. Trans. R. Soc. Lond. B. Biol. Sci.
, vol.300
, pp. 1-59
-
-
Colquhoun, D.1
Hawkes, A.G.2
-
18
-
-
0025348901
-
Stochastic properties of ion channel openings and bursts in a membrane patch that contains two channels: Evidence concerning the number of channels present when a record containing only single openings is observed
-
Colquhoun, D., and A. G. Hawkes. 1990. Stochastic properties of ion channel openings and bursts in a membrane patch that contains two channels: evidence concerning the number of channels present when a record containing only single openings is observed. Proc. R. Soc. Lond. B. Biol. Sci. 240:453-477.
-
(1990)
Proc. R. Soc. Lond. B. Biol. Sci.
, vol.240
, pp. 453-477
-
-
Colquhoun, D.1
Hawkes, A.G.2
-
19
-
-
0030956174
-
Maximum likelihood estimation of aggregated Markov processes
-
Qin, F., A. Auerbach, and F. Sachs. 1997. Maximum likelihood estimation of aggregated Markov processes. Proc. R. Soc. Lond. B Biol. Sci. 264:375-383.
-
(1997)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.264
, pp. 375-383
-
-
Qin, F.1
Auerbach, A.2
Sachs, F.3
-
20
-
-
33751233128
-
A hybrid approach to hidden Markov modeling for single channel kinetics
-
Pos. (Abstr.)
-
Qin, F., A. Auerbach, and F. Sachs. 2000. A hybrid approach to hidden Markov modeling for single channel kinetics. Biophys. J. 78:1970Pos. (Abstr.)
-
(2000)
Biophys. J.
, vol.78
, pp. 1970
-
-
Qin, F.1
Auerbach, A.2
Sachs, F.3
-
21
-
-
0021797982
-
Open channel noise. I. Noise in acetylcholine receptor currents suggests conformational fluctuations
-
Sigworth, F. J. 1985. Open channel noise. I. Noise in acetylcholine receptor currents suggests conformational fluctuations. Biophys. J. 47:709-720.
-
(1985)
Biophys. J.
, vol.47
, pp. 709-720
-
-
Sigworth, F.J.1
-
22
-
-
0022523172
-
Open channel noise. II. A test for coupling between current fluctuations and conformational transitions in the acetylcholine receptor
-
Sigworth, F. J. 1986. Open channel noise. II. A test for coupling between current fluctuations and conformational transitions in the acetylcholine receptor. Biophys. J. 49:1041-1046.
-
(1986)
Biophys. J.
, vol.49
, pp. 1041-1046
-
-
Sigworth, F.J.1
-
23
-
-
0023492725
-
Open channel noise. III. High-resolution recordings show rapid current fluctuations in gramicidin A and four chemical analogues
-
Sigworth, F. J., D. W. Urry, and K. U. Prasad. 1987. Open channel noise. III. High-resolution recordings show rapid current fluctuations in gramicidin A and four chemical analogues. Biophys. J. 52:1055-1064.
-
(1987)
Biophys. J.
, vol.52
, pp. 1055-1064
-
-
Sigworth, F.J.1
Urry, D.W.2
Prasad, K.U.3
-
24
-
-
0032124372
-
Identification of hidden Markov models for ion channel currents - Part II: State-dependent excess noise
-
Venkataramanan, L., R. Kuc, and F. J. Sigworth. 1998. Identification of hidden Markov models for ion channel currents - Part II: State-dependent excess noise. IEEE Trans. Signal Proc. 46:1916-1929.
-
(1998)
IEEE Trans. Signal Proc.
, vol.46
, pp. 1916-1929
-
-
Venkataramanan, L.1
Kuc, R.2
Sigworth, F.J.3
-
25
-
-
0032122144
-
Identification of hidden Markov models for ion channel currents - Part I: Colored background noise
-
Venkataramanan, L., J. L. Walsh, R. Kuc, and F. J. Sigworth. 1998. Identification of hidden Markov models for ion channel currents - Part I: Colored background noise. IEEE Trans. Signal Proc. 46:1901-1915.
-
(1998)
IEEE Trans. Signal Proc.
, vol.46
, pp. 1901-1915
-
-
Venkataramanan, L.1
Walsh, J.L.2
Kuc, R.3
Sigworth, F.J.4
-
26
-
-
0037444604
-
The quality of maximum likelihood estimates of ion channel rate constants
-
Colquhoun, D., C. J. Hatton, and A. G. Hawkes. 2003. The quality of maximum likelihood estimates of ion channel rate constants. J. Physiol. 547:699-728.
-
(2003)
J. Physiol.
, vol.547
, pp. 699-728
-
-
Colquhoun, D.1
Hatton, C.J.2
Hawkes, A.G.3
-
27
-
-
0025034113
-
Yet another approach to the dwell-time omission problem of single-channel analysis
-
Crouzy, S. C., and F. J. Sigworth. 1990. Yet another approach to the dwell-time omission problem of single-channel analysis. Biophys. J. 58:731-743.
-
(1990)
Biophys. J.
, vol.58
, pp. 731-743
-
-
Crouzy, S.C.1
Sigworth, F.J.2
-
28
-
-
0027458539
-
Fluctuations in ion channel gating currents. Analysis of nonstationary shot noise
-
Crouzy, S. C., and F. J. Sigworth. 1993. Fluctuations in ion channel gating currents. Analysis of nonstationary shot noise. Biophys. J. 64:68-76.
-
(1993)
Biophys. J.
, vol.64
, pp. 68-76
-
-
Crouzy, S.C.1
Sigworth, F.J.2
-
29
-
-
0001774017
-
Fitting and statistical analysis of single-channel records
-
B. Sakmann and E. Neher, editors. Plenum Press, New York and London
-
Colquhoun, D., and F. J. Sigworth. 1983. Fitting and statistical analysis of single-channel records. In Single-Channel Recording. B. Sakmann and E. Neher, editors. Plenum Press, New York and London. 191.
-
(1983)
Single-Channel Recording
, pp. 191
-
-
Colquhoun, D.1
Sigworth, F.J.2
-
30
-
-
1542285356
-
Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling
-
Qin, F. 2004. Restoration of single-channel currents using the segmental k-means method based on hidden Markov modeling. Biophys. J. 86:1488-1501.
-
(2004)
Biophys. J.
, vol.86
, pp. 1488-1501
-
-
Qin, F.1
-
31
-
-
0000353178
-
A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains
-
Baum, L. E., T. Petrie, G. Soules, and N. Weiss. 1970. A maximization technique occurring in the statistical analysis of probabilistic functions of Markov chains. Ann. Math. Stat. 41:164-171.
-
(1970)
Ann. Math. Stat.
, vol.41
, pp. 164-171
-
-
Baum, L.E.1
Petrie, T.2
Soules, G.3
Weiss, N.4
-
32
-
-
85024423711
-
New results in linear filtering and prediction theory
-
Kalman, R. E., and R. S. Bucy. 1961. New results in linear filtering and prediction theory. Trans. ASME, J. Basic Eng. 83D:95-108.
-
(1961)
Trans. ASME, J. Basic Eng.
, vol.83 D
, pp. 95-108
-
-
Kalman, R.E.1
Bucy, R.S.2
-
33
-
-
0035912221
-
Resolution of distinct rotational substeps by submilisecond kinetic analysis of F1-ATPase
-
Yasuda, R., H. Noji, M. Yoshida, K. Kinosita, and H. Itoh. 2001. Resolution of distinct rotational substeps by submilisecond kinetic analysis of F1-ATPase. Nature. 410:898-904.
-
(2001)
Nature
, vol.410
, pp. 898-904
-
-
Yasuda, R.1
Noji, H.2
Yoshida, M.3
Kinosita, K.4
Itoh, H.5
-
34
-
-
0742270602
-
Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation
-
Nishizaka, T., K. Oiwa, H. Noji, S. Kimura, M. Yoshida, and K. Kinosita Jr. 2004. Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation. Nature. 11:142-148.
-
(2004)
Nature
, vol.11
, pp. 142-148
-
-
Nishizaka, T.1
Oiwa, K.2
Noji, H.3
Kimura, S.4
Yoshida, M.5
Kinosita Jr., K.6
-
35
-
-
0345047725
-
Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
-
Neuman, K. C., E. A. Abbondanzieri, R. Landick, J. Gelles, and S. M. Block. 2003. Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking. Cell. 115:437-447.
-
(2003)
Cell
, vol.115
, pp. 437-447
-
-
Neuman, K.C.1
Abbondanzieri, E.A.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
36
-
-
20544452797
-
Tracking topoisomerase activity at the single-molecule level
-
Charvin, G., T. R. Strick, D. Bensimon, and V. Croquette. 2005. Tracking topoisomerase activity at the single-molecule level. Annu. Rev. Biophys. Biomol. Struct. 34:201-219.
-
(2005)
Annu. Rev. Biophys. Biomol. Struct.
, vol.34
, pp. 201-219
-
-
Charvin, G.1
Strick, T.R.2
Bensimon, D.3
Croquette, V.4
-
37
-
-
18144410993
-
Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics
-
Bruno, W. J., J. Yang, and J. E. Pearson. 2005. Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics. Proc. Natl. Acad. Sci. USA. 102:6326-6331.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6326-6331
-
-
Bruno, W.J.1
Yang, J.2
Pearson, J.E.3
-
38
-
-
0026722956
-
Dependency plots suggest the kinetic structure of ion channels
-
Magleby, K. L., and L. Song. 1992. Dependency plots suggest the kinetic structure of ion channels. Proc. R. Soc. Lond. B. Biol. Sci. 249:133-142.
-
(1992)
Proc. R. Soc. Lond. B. Biol. Sci.
, vol.249
, pp. 133-142
-
-
Magleby, K.L.1
Song, L.2
-
39
-
-
19644377414
-
Mechanics of the kinesin step
-
Carter, N. J., and R. A. Cross. 2005. Mechanics of the kinesin step. Nature. 435:308-312.
-
(2005)
Nature
, vol.435
, pp. 308-312
-
-
Carter, N.J.1
Cross, R.A.2
-
40
-
-
33746858803
-
Statistical analysis of kinesin kinetics by applying methods from single channel recordings
-
Pos. (Abstr.)
-
Jeney, S., F. Sachs, A. Pralle, E. L. Florin, and H. J. K. Horber. 2000. Statistical analysis of kinesin kinetics by applying methods from single channel recordings. Biophys. J. 78:717Pos. (Abstr.)
-
(2000)
Biophys. J.
, vol.78
, pp. 717
-
-
Jeney, S.1
Sachs, F.2
Pralle, A.3
Florin, E.L.4
Horber, H.J.K.5
-
41
-
-
85030594266
-
-
Buffalo, NY
-
QuB. www.qub.buffalo.edu, University at Buffalo, Buffalo, NY.
-
QuB
-
-
-
42
-
-
0029989974
-
Crystal structure of the kinesin motor domain reveals a structural similarity to myosin
-
Kull, F. J., E. P. Sablin, R. Lau, R. Fletterick, and R. D. Vale. 1996. Crystal structure of the kinesin motor domain reveals a structural similarity to myosin. Nature. 380:550-559.
-
(1996)
Nature
, vol.380
, pp. 550-559
-
-
Kull, F.J.1
Sablin, E.P.2
Lau, R.3
Fletterick, R.4
Vale, R.D.5
-
43
-
-
0141732282
-
A structural state of the myosin V motor without bound nucleotide
-
Coureux, P. D., A. L. Wells, J. Menetrey, C. M. Yengo, C. A. Morris, H. L. Sweeney, and A. Houdusse. 2003. A structural state of the myosin V motor without bound nucleotide. Nature. 425:419-423.
-
(2003)
Nature
, vol.425
, pp. 419-423
-
-
Coureux, P.D.1
Wells, A.L.2
Menetrey, J.3
Yengo, C.M.4
Morris, C.A.5
Sweeney, H.L.6
Houdusse, A.7
-
44
-
-
0033808511
-
A direct optimization approach to hidden Markov modeling for single channel kinetics
-
Qin, F., A. Auerbach, and F. Sachs. 2000. A direct optimization approach to hidden Markov modeling for single channel kinetics. Biophys. J. 79:1915-1927.
-
(2000)
Biophys. J.
, vol.79
, pp. 1915-1927
-
-
Qin, F.1
Auerbach, A.2
Sachs, F.3
-
45
-
-
0025716139
-
Characterization of single channel currents using digital signal processing techniques based on Hidden Markov Models
-
Chung, S. H., J. B. Moore, L. G. Xia, L. S. Premkumar, and P. W. Gage. 1990. Characterization of single channel currents using digital signal processing techniques based on Hidden Markov Models. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 329:265-285.
-
(1990)
Philos. Trans. R. Soc. Lond. B. Biol. Sci.
, vol.329
, pp. 265-285
-
-
Chung, S.H.1
Moore, J.B.2
Xia, L.G.3
Premkumar, L.S.4
Gage, P.W.5
-
46
-
-
0015600423
-
The Viterbi algorithm
-
Forney, G. D. 1973. The Viterbi algorithm. Proc. IEEE. 61:268-278.
-
(1973)
Proc. IEEE
, vol.61
, pp. 268-278
-
-
Forney, G.D.1
-
47
-
-
84935113569
-
Error bounds for convolutional codes and an asymptotically optimal decoding algorithm
-
Viterbi, A. J. 1967. Error bounds for convolutional codes and an asymptotically optimal decoding algorithm. IEEE Trans. Inform. Theory. IT-13:260-269.
-
(1967)
IEEE Trans. Inform. Theory
, vol.IT-13
, pp. 260-269
-
-
Viterbi, A.J.1
-
49
-
-
0022712081
-
A segmental K-means training procedure for connected word recognition
-
Rabiner, L. R., J. G. Wilpon, and B. Juang. 1986. A segmental K-means training procedure for connected word recognition. AT&T Tech. J. 64:21-40.
-
(1986)
AT&T Tech. J.
, vol.64
, pp. 21-40
-
-
Rabiner, L.R.1
Wilpon, J.G.2
Juang, B.3
-
51
-
-
0033556862
-
A unifying review of linearGaussian models
-
Roweis, S., and Z. Ghahramani. 1999. A unifying review of linearGaussian models. Neural Comput. 11:305-345.
-
(1999)
Neural Comput.
, vol.11
, pp. 305-345
-
-
Roweis, S.1
Ghahramani, Z.2
-
52
-
-
0037468838
-
Three-dimensional structural dynamics of myosin V by single-molecule fluorescence polarization
-
Forkey, J. N., M. E. Quinlan, M. A. Shaw, J. E. Corrie, and Y. E. Goldman. 2003. Three-dimensional structural dynamics of myosin V by single-molecule fluorescence polarization. Nature. 422:399-404.
-
(2003)
Nature
, vol.422
, pp. 399-404
-
-
Forkey, J.N.1
Quinlan, M.E.2
Shaw, M.A.3
Corrie, J.E.4
Goldman, Y.E.5
-
53
-
-
0033807604
-
Hidden Markov modeling for single channel kinetics with filtering and correlated noise
-
Qin, F., A. Auerbach, and F. Sachs. 2000. Hidden Markov modeling for single channel kinetics with filtering and correlated noise. Biophys. J. 79:1928-1944.
-
(2000)
Biophys. J.
, vol.79
, pp. 1928-1944
-
-
Qin, F.1
Auerbach, A.2
Sachs, F.3
-
54
-
-
0034757969
-
Hidden-Markov methods for the analysis of single-molecule actomyosin displacement data: The variance-hidden-Markov method
-
Smith, D. A., W. Steffen, R. M. Simmons, and J. Sleep. 2001. Hidden-Markov methods for the analysis of single-molecule actomyosin displacement data: the variance-hidden-Markov method. Biophys. J. 81:2795-2816.
-
(2001)
Biophys. J.
, vol.81
, pp. 2795-2816
-
-
Smith, D.A.1
Steffen, W.2
Simmons, R.M.3
Sleep, J.4
|