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Volumn 44, Issue , 2013, Pages 15-21

Analysis of the NCI-60 dataset for cancer-related microRNA and mRNA using expression profiles

Author keywords

CpG island; Expression profile; Fragile sites; MicroRNA; MicroRNA cluster; Oncogene; Pearson correlation; Spearman rank correlation; Tumor suppressor gene

Indexed keywords

CPG ISLANDS; EXPRESSION PROFILE; FRAGILE SITES; MICRORNAS; ONCOGENE; PEARSON CORRELATION; SPEARMAN RANK CORRELATION; TUMOR SUPPRESSOR GENES;

EID: 84875200060     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2013.02.001     Document Type: Article
Times cited : (5)

References (62)
  • 1
    • 49949116902 scopus 로고    scopus 로고
    • The impact of microRNAs on protein output
    • D. Baek The impact of microRNAs on protein output Nature 455 2008 64 71
    • (2008) Nature , vol.455 , pp. 64-71
    • Baek, D.1
  • 2
    • 79955913660 scopus 로고    scopus 로고
    • MiR-34a and miR-15a/16 are co-regulated in non-small cell lung cancer and control cell cycle progression in a synergistic and Rb-dependent manner
    • N. Bandi, and E. Vassella miR-34a and miR-15a/16 are co-regulated in non-small cell lung cancer and control cell cycle progression in a synergistic and Rb-dependent manner Molecular cancer 10 2011 55
    • (2011) Molecular Cancer , vol.10 , pp. 55
    • Bandi, N.1    Vassella, E.2
  • 3
    • 70350731129 scopus 로고    scopus 로고
    • Epigenetic regulation of microRNA expression in colorectal cancer
    • E. Bandres Epigenetic regulation of microRNA expression in colorectal cancer International Journal of Cancer 125 2009 2737 2743
    • (2009) International Journal of Cancer , vol.125 , pp. 2737-2743
    • Bandres, E.1
  • 4
    • 26944498633 scopus 로고    scopus 로고
    • Prediction and validation of microRNAs and their targets
    • DOI 10.1016/j.febslet.2005.09.040, PII S0014579305011543, RNAi: Mechanisms, Biology and Applications
    • I. Bentwich Prediction and validation of microRNAs and their targets FEBS Letters 579 2005 5904 5910 (Pubitemid 41484136)
    • (2005) FEBS Letters , vol.579 , Issue.26 , pp. 5904-5910
    • Bentwich, I.1
  • 9
    • 27244432205 scopus 로고    scopus 로고
    • MicroRNAs as oncogenes and tumor suppressors
    • C.Z. Chen MicroRNAs as oncogenes and tumor suppressors New England Journal of Medicine 353 2005 1768 1771
    • (2005) New England Journal of Medicine , vol.353 , pp. 1768-1771
    • Chen, C.Z.1
  • 10
    • 84905939133 scopus 로고    scopus 로고
    • Basic Statistics and Pharmaceutical Statistical Applications, Second Edition
    • J.E. De Muth Basic Statistics and Pharmaceutical Statistical Applications, Second Edition Taylor & Francis 2006
    • (2006) Taylor & Francis
    • De Muth, J.E.1
  • 11
    • 50849104285 scopus 로고    scopus 로고
    • Mechanisms of microRNA deregulation in human cancer
    • S. Deng Mechanisms of microRNA deregulation in human cancer Cell Cycle 7 2008 2643 2646
    • (2008) Cell Cycle , vol.7 , pp. 2643-2646
    • Deng, S.1
  • 12
    • 77952921840 scopus 로고    scopus 로고
    • MicroRNA cluster 221-222 and estrogen receptor alpha interactions in breast cancer
    • G. Di Leva MicroRNA cluster 221-222 and estrogen receptor alpha interactions in breast cancer Journal of National Cancer Institute 102 2010 706 721
    • (2010) Journal of National Cancer Institute , vol.102 , pp. 706-721
    • Di Leva, G.1
  • 13
    • 0842321501 scopus 로고    scopus 로고
    • MicroRNA targets in Drosophila
    • A.J. Enright MicroRNA targets in Drosophila Genome Biology 5 2003 R1
    • (2003) Genome Biology , vol.5 , pp. 1
    • Enright, A.J.1
  • 14
    • 77952299722 scopus 로고    scopus 로고
    • MiR-124 and miR-203 are epigenetically silenced tumor-suppressive microRNAs in hepatocellular carcinoma
    • M. Furuta miR-124 and miR-203 are epigenetically silenced tumor-suppressive microRNAs in hepatocellular carcinoma Carcinogenesis 31 2010 766 776
    • (2010) Carcinogenesis , vol.31 , pp. 766-776
    • Furuta, M.1
  • 15
    • 80455154984 scopus 로고    scopus 로고
    • Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
    • D.M. Garcia Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs National Structure of Molecular Biology 18 2011 1139 1146
    • (2011) National Structure of Molecular Biology , vol.18 , pp. 1139-1146
    • Garcia, D.M.1
  • 17
    • 33644750115 scopus 로고    scopus 로고
    • MiRBase: MicroRNA sequences, targets and gene nomenclature
    • S. Griffiths-Jones miRBase: microRNA sequences, targets and gene nomenclature Nucleic Acids Research 34 2006 D140 D144
    • (2006) Nucleic Acids Research , vol.34
    • Griffiths-Jones, S.1
  • 20
    • 78651266827 scopus 로고    scopus 로고
    • MiRTarBase: A database curates experimentally validated microRNA-target interactions
    • S.D. Hsu miRTarBase: a database curates experimentally validated microRNA-target interactions Nucleic Acids Research 39 2011 D163 D169
    • (2011) Nucleic Acids Research , vol.39
    • Hsu, S.D.1
  • 23
    • 58149179989 scopus 로고    scopus 로고
    • MiR2Disease: A manually curated database for microRNA deregulation in human disease
    • Q. Jiang miR2Disease: a manually curated database for microRNA deregulation in human disease Nucleic Acids Research 37 2009 D98 D104
    • (2009) Nucleic Acids Research , vol.37
    • Jiang, Q.1
  • 24
    • 14044251458 scopus 로고    scopus 로고
    • Human microRNA targets
    • B. John Human microRNA targets PLoS Biology 2 2004 e363
    • (2004) PLoS Biology , vol.2 , pp. 363
    • John, B.1
  • 25
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: New developments in KEGG
    • M. Kanehisa From genomics to chemical genomics: new developments in KEGG Nucleic Acids Research 34 2006 D354 D357
    • (2006) Nucleic Acids Research , vol.34
    • Kanehisa, M.1
  • 26
    • 38549126643 scopus 로고    scopus 로고
    • KEGG for linking genomes to life and the environment
    • M. Kanehisa KEGG for linking genomes to life and the environment Nucleic Acids Research 36 2008 D480 D484
    • (2008) Nucleic Acids Research , vol.36
    • Kanehisa, M.1
  • 28
    • 42049104107 scopus 로고    scopus 로고
    • Exploration of tumor-suppressive microRNAs silenced by DNA hypermethylation in oral cancer
    • DOI 10.1158/0008-5472.CAN-07-5194
    • K. Kozaki Exploration of tumor-suppressive microRNAs silenced by DNA hypermethylation in oral cancer Cancer Research 68 2008 2094 2105 (Pubitemid 351521781)
    • (2008) Cancer Research , vol.68 , Issue.7 , pp. 2094-2105
    • Kozaki, K.-I.1    Imoto, I.2    Mogi, S.3    Omura, K.4    Inazawa, J.5
  • 29
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: MicroRNA target prediction easy, fast and flexible
    • J. Kruger, and M. Rehmsmeier RNAhybrid: microRNA target prediction easy, fast and flexible Nucleic Acids Research 34 2006 W451 W454
    • (2006) Nucleic Acids Research , vol.34
    • Kruger, J.1    Rehmsmeier, M.2
  • 30
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • DOI 10.1016/j.cell.2004.12.035, PII S0092867404012607
    • B.P. Lewis Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets Cell 120 2005 15 20 (Pubitemid 40094598)
    • (2005) Cell , vol.120 , Issue.1 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 32
    • 73949101367 scopus 로고    scopus 로고
    • Identification of microRNA expression patterns and definition of a microRNA/mRNA regulatory network in distinct molecular groups of multiple myeloma
    • M. Lionetti Identification of microRNA expression patterns and definition of a microRNA/mRNA regulatory network in distinct molecular groups of multiple myeloma Blood 114 2009 e20 e26
    • (2009) Blood , vol.114
    • Lionetti, M.1
  • 33
    • 77953677658 scopus 로고    scopus 로고
    • Identifying mRNA targets of microRNA dysregulated in cancer: With application to clear cell Renal Cell Carcinoma
    • H. Liu Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma BMC System Biology 4 2010 51
    • (2010) BMC System Biology , vol.4 , pp. 51
    • Liu, H.1
  • 34
    • 54849408182 scopus 로고    scopus 로고
    • An analysis of human microRNA and disease associations
    • M. Lu An analysis of human microRNA and disease associations PLoS ONE 3 2008 e3420
    • (2008) PLoS ONE , vol.3 , pp. 3420
    • Lu, M.1
  • 35
    • 38349191617 scopus 로고    scopus 로고
    • CpG island hypermethylation of tumor suppressor microRNAs in human cancer
    • A. Lujambio, and M. Esteller CpG island hypermethylation of tumor suppressor microRNAs in human cancer Cell Cycle 6 2007 1455 1459
    • (2007) Cell Cycle , vol.6 , pp. 1455-1459
    • Lujambio, A.1    Esteller, M.2
  • 37
    • 51649083501 scopus 로고    scopus 로고
    • A microRNA DNA methylation signature for human cancer metastasis
    • A. Lujambio A microRNA DNA methylation signature for human cancer metastasis Proceeding of the National Academy of Science USA 105 2008 13556 13561
    • (2008) Proceeding of the National Academy of Science USA , vol.105 , pp. 13556-13561
    • Lujambio, A.1
  • 38
    • 35148886434 scopus 로고    scopus 로고
    • Tumour invasion and metastasis initiated by microRNA-10b in breast cancer
    • DOI 10.1038/nature06174, PII NATURE06174
    • L. Ma Tumour invasion and metastasis initiated by microRNA-10b in breast cancer Nature 449 2007 682 688 (Pubitemid 47552092)
    • (2007) Nature , vol.449 , Issue.7163 , pp. 682-688
    • Ma, L.1    Teruya-Feldstein, J.2    Weinberg, R.A.3
  • 39
    • 51949087680 scopus 로고    scopus 로고
    • A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity
    • N.J. Martinez A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity Genes and Development 22 2008 2535 2549
    • (2008) Genes and Development , vol.22 , pp. 2535-2549
    • Martinez, N.J.1
  • 40
    • 33644876958 scopus 로고    scopus 로고
    • TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
    • V. Matys TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes Nucleic Acids Research 34 2006 D108 D110
    • (2006) Nucleic Acids Research , vol.34
    • Matys, V.1
  • 42
    • 77956386180 scopus 로고    scopus 로고
    • Silico Study of Expression Profiles Correlation between MicroRNAs and Cancerous Genes
    • Fred, A.L.N., et al., (Eds.) INSTICC Press
    • Ng, K.-L.,Weng, C.-W., 2010. In Silico Study of Expression Profiles Correlation between MicroRNAs and Cancerous Genes. In Fred, A.L.N., et al., (Eds.) Bioinformatics, INSTICC Press, pp 141-146
    • (2010) Bioinformatics , pp. 141-146
    • Ng, K.-L.1    Weng, C.-W.2
  • 44
    • 77954382780 scopus 로고    scopus 로고
    • Mir-17-92, a cluster of miRNAs in the midst of the cancer network
    • V. Olive mir-17-92, a cluster of miRNAs in the midst of the cancer network International Journal of Biochemistry and Cell Biology 42 2010 1348 1354
    • (2010) International Journal of Biochemistry and Cell Biology , vol.42 , pp. 1348-1354
    • Olive, V.1
  • 45
    • 44449094626 scopus 로고    scopus 로고
    • Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines
    • Y. Ruike Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines Journal of Hum Genetics 53 2008 515 523
    • (2008) Journal of Hum Genetics , vol.53 , pp. 515-523
    • Ruike, Y.1
  • 46
    • 33744805399 scopus 로고    scopus 로고
    • Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells
    • DOI 10.1016/j.ccr.2006.04.020, PII S1535610806001437
    • Y. Saito Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells Cancer Cell 9 2006 435 443 (Pubitemid 43832188)
    • (2006) Cancer Cell , vol.9 , Issue.6 , pp. 435-443
    • Saito, Y.1    Liang, G.2    Egger, G.3    Friedman, J.M.4    Chuang, J.C.5    Coetzee, G.A.6    Jones, P.A.7
  • 47
    • 43049133807 scopus 로고    scopus 로고
    • MicroRNA let-7b targets important cell cycle molecules in malignant melanoma cells and interferes with anchorage-independent growth
    • DOI 10.1038/cr.2008.45, PII CR200845
    • J. Schultz MicroRNA let-7b targets important cell cycle molecules in malignant melanoma cells and interferes with anchorage-independent growth Cell Research 18 2008 549 557 (Pubitemid 351630945)
    • (2008) Cell Research , vol.18 , Issue.5 , pp. 549-557
    • Schultz, J.1    Lorenz, P.2    Gross, G.3    Ibrahim, S.4    Kunz, M.5
  • 48
    • 78651320425 scopus 로고    scopus 로고
    • 2011. genenames.org: The HGNC resources in
    • R.L. Seal 2011. genenames.org: the HGNC resources in Nucleic Acids Research 39 2011 D514 D519
    • (2011) Nucleic Acids Research , vol.39
    • Seal, R.L.1
  • 49
    • 31044444975 scopus 로고    scopus 로고
    • TarBase: A comprehensive database of experimentally supported animal microRNA targets
    • DOI 10.1261/rna.2239606
    • P Sethupathy TarBase: A comprehensive database of experimentally supported animal microRNA targets RNA 12 2006 192 197 (Pubitemid 43121923)
    • (2006) RNA , vol.12 , Issue.2 , pp. 192-197
    • Sethupathy, P.1    Corda, B.2    Hatzigeorgiou, A.G.3
  • 52
    • 67650687092 scopus 로고    scopus 로고
    • CellMiner: A relational database and query tool for the NCI-60 cancer cell lines
    • U.T. Shankavaram CellMiner: a relational database and query tool for the NCI-60 cancer cell lines BMC Genomics 10 2009 277
    • (2009) BMC Genomics , vol.10 , pp. 277
    • Shankavaram, U.T.1
  • 53
    • 42049092138 scopus 로고    scopus 로고
    • Downregulation of CCND1 and CDK6 by miR-34a induces cell cycle arrest
    • F. Sun Downregulation of CCND1 and CDK6 by miR-34a induces cell cycle arrest FEBS Letters 582 2008 1564 1568
    • (2008) FEBS Letters , vol.582 , pp. 1564-1568
    • Sun, F.1
  • 55
    • 84938100216 scopus 로고    scopus 로고
    • Statistics and data analysis: From elementary to intermediate
    • A.C. Tamhane, and D.D. Dunlop Statistics and data analysis: from elementary to intermediate Prentice Hall 1999
    • (1999) Prentice Hall
    • Tamhane, A.C.1    Dunlop, D.D.2
  • 56
    • 49249121155 scopus 로고    scopus 로고
    • Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer
    • M. Toyota Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer Cancer Research 68 2008 4123 4132
    • (2008) Cancer Research , vol.68 , pp. 4123-4132
    • Toyota, M.1
  • 57
    • 34249819336 scopus 로고    scopus 로고
    • MicroRNA-Mediated Feedback and Feedforward Loops Are Recurrent Network Motifs in Mammals
    • DOI 10.1016/j.molcel.2007.05.018, PII S109727650700319X
    • J. Tsang MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals Molecular Cell 26 2007 753 767 (Pubitemid 46856248)
    • (2007) Molecular Cell , vol.26 , Issue.5 , pp. 753-767
    • Tsang, J.1    Zhu, J.2    Van Oudenaarden, A.3
  • 58
    • 75349106759 scopus 로고    scopus 로고
    • MicroRNAs: Oncogenes, tumor suppressors or master regulators of cancer heterogeneity?
    • P.M. Voorhoeve MicroRNAs: Oncogenes, tumor suppressors or master regulators of cancer heterogeneity? Biochimica Biophysics Acta 1805 2010 72 86
    • (2010) Biochimica Biophysics Acta , vol.1805 , pp. 72-86
    • Voorhoeve, P.M.1
  • 59
    • 66349119276 scopus 로고    scopus 로고
    • Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data
    • Y.P. Wang, and K.B. Li Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data BMC Genomics 10 2009 218
    • (2009) BMC Genomics , vol.10 , pp. 218
    • Wang, Y.P.1    Li, K.B.2
  • 60
    • 53149093956 scopus 로고    scopus 로고
    • Glucose induces apoptosis of cardiomyocytes via microRNA-1 and IGF-1
    • X.Y. Yu Glucose induces apoptosis of cardiomyocytes via microRNA-1 and IGF-1 Biochemica Biophysics Research Communication 376 2008 548 552
    • (2008) Biochemica Biophysics Research Communication , vol.376 , pp. 548-552
    • Yu, X.Y.1
  • 61
    • 77952360640 scopus 로고    scopus 로고
    • MicroRNA 17/20 inhibits cellular invasion and tumor metastasis in breast cancer by heterotypic signaling
    • Z. Yu microRNA 17/20 inhibits cellular invasion and tumor metastasis in breast cancer by heterotypic signaling Proceedings of the National Academy of Science USA 107 2010 8231 8236
    • (2010) Proceedings of the National Academy of Science USA , vol.107 , pp. 8231-8236
    • Yu, Z.1
  • 62
    • 33846188098 scopus 로고    scopus 로고
    • MicroRNAs as oncogenes and tumor suppressors
    • DOI 10.1016/j.ydbio.2006.08.028, PII S0012160606010967
    • B. Zhang microRNAs as oncogenes and tumor suppressors Developmental Biology 302 2007 1 12 (Pubitemid 46096921)
    • (2007) Developmental Biology , vol.302 , Issue.1 , pp. 1-12
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3    Anderson, T.A.4


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