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Volumn 7, Issue 3, 2010, Pages 73-81

Vertebrate microRNA genes and CpG-islands

Author keywords

CpG islands; Gene regulation; Methylation; MicroRNA; Promoter regions

Indexed keywords

MICRORNA;

EID: 77954751942     PISSN: 11099518     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (38)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel D.P., MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116, (2004), 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein E., Caudy A.A., Hammond S.M., and Hannon G.J., Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409, (2001), 295-296.
    • (2001) Nature , vol.409 , pp. 295-296
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 3
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M., Rauhut R., Lendeckel W., and Tuschl T. Identification of novel genes coding for small expressed RNAs. Science 294, (2001), 853-858.
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3    Tuschl, T.4
  • 4
    • 0033935425 scopus 로고    scopus 로고
    • Control of developmental timing in Caenorhabditis elegans
    • Ambros V., Control of developmental timing in Caenorhabditis elegans. Curr. Opin. Genet. Dev. 10, (2000), 428-433.
    • (2000) Curr. Opin. Genet. Dev , vol.10 , pp. 428-433
    • Ambros, V.1
  • 5
    • 0038299558 scopus 로고    scopus 로고
    • Role of microRNAs in plant and animal development
    • Carrington J.C., and Ambros V. Role of microRNAs in plant and animal development. Science 301, (2003), 336-338.
    • (2003) Science , vol.301 , pp. 336-338
    • Carrington, J.C.1    Ambros, V.2
  • 7
    • 0141843656 scopus 로고    scopus 로고
    • The nuclear RNase III Drosha initiates microRNA processing
    • Lee Y. et al., The nuclear RNase III Drosha initiates microRNA processing. Nature 425, (2003), 415-419.
    • (2003) Nature , vol.425 , pp. 415-419
    • Lee, Y.1
  • 9
    • 33645465154 scopus 로고    scopus 로고
    • Lower expression of genes near microRNA in C. elegans germline
    • Inaoka H., Fukuoka Y., and Kohane I.S. Lower expression of genes near microRNA in C. elegans germline. BMC Bioinformatics. 7, (2006), 112.
    • (2006) BMC Bioinformatics , vol.7 , pp. 112
    • Inaoka, H.1    Fukuoka, Y.2    Kohane, I.S.3
  • 10
    • 34247642173 scopus 로고    scopus 로고
    • Evidence of spatially bound gene regulation in Mus musculus: Decreased gene expression proximal to microRNA genomic location
    • Inaoka H., Fukuoka Y., and Kohane I.S., Evidence of spatially bound gene regulation in Mus musculus: decreased gene expression proximal to microRNA genomic location. Proc Natl Acad Sci. 104(12), (2007), 5020-5.
    • (2007) Proc Natl Acad Sci , vol.104 , Issue.12 , pp. 5020-5
    • Inaoka, H.1    Fukuoka, Y.2    Kohane, I.S.3
  • 12
    • 33744805399 scopus 로고    scopus 로고
    • Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells
    • Saito Y., Liang G., Egger G., Friedman J.M., Chuang J.C., Coetzee G.A., and Jones P.A., Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells. Cancer Cell. 9(6), (2006), 435-43.
    • (2006) Cancer Cell. , vol.9 , Issue.6 , pp. 435-43
    • Saito, Y.1    Liang, G.2    Egger, G.3    Friedman, J.M.4    Chuang, J.C.5    Coetzee, G.A.6    Jones, P.A.7
  • 13
    • 42049104107 scopus 로고    scopus 로고
    • Exploration of tumor-suppressive microRNAs silenced by DNA hypermethylation in oral cancer
    • Kozaki K., Imoto I., Mogi S., Omura K., and Inazawa J., Exploration of tumor-suppressive microRNAs silenced by DNA hypermethylation in oral cancer. Cancer Res. 68(7), (2008), 2094-105.
    • (2008) Cancer Res. , vol.68 , Issue.7 , pp. 2094-105
    • Kozaki, K.1    Imoto, I.2    Mogi, S.3    Omura, K.4    Inazawa, J.5
  • 15
    • 38349191617 scopus 로고    scopus 로고
    • CpG island hypermethylation of tumor suppressor microRNAs in human cancer
    • Lujambio A. and Esteller M., CpG island hypermethylation of tumor suppressor microRNAs in human cancer. Cell Cycle 6(12), (2007), 1455-9.
    • (2007) Cell Cycle , vol.6 , Issue.12 , pp. 1455-9
    • Lujambio, A.1    Esteller, M.2
  • 16
    • 0023216891 scopus 로고
    • CpGislands in vertebrate genomes
    • Gardiner-Garden M., and Frommer M., CpGislands in vertebrate genomes. J Mol Biol. 196(2), (1987), 261-82.
    • (1987) J Mol Biol , vol.196 , Issue.2 , pp. 261-82
    • Gardiner-Garden, M.1    Frommer, M.2
  • 18
    • 19344368143 scopus 로고    scopus 로고
    • Genome-wide analysis reveals strong correlation between CpG-islands with nearby transcription start sites of genes and their tissue specificity
    • Yamashita R., Suzuki, Y. Sugano S., and Nakai K., Genome-wide analysis reveals strong correlation between CpG-islands with nearby transcription start sites of genes and their tissue specificity. Gene 350(2), (2005), 129-36.
    • (2005) Gene , vol.350 , Issue.2 , pp. 129-36
    • Yamashita, R.1    Suzuki, Y.2    Sugano, S.3    Nakai, K.4
  • 20
    • 0037250168 scopus 로고    scopus 로고
    • The UCSC Genome Browser Database
    • Karolchik D. et al., The UCSC Genome Browser Database. Nucleic Acids Res. 31(1), (2003), 51-4.
    • (2003) Nucleic Acids Res , vol.31 , Issue.1 , pp. 51-4
    • Karolchik, D.1
  • 23
    • 17144369848 scopus 로고    scopus 로고
    • Transcriptional gene silencing by short interfering RNAs
    • Kawasaki H., and Taira K., Transcriptional gene silencing by short interfering RNAs. Curr. Opin. Mol. Ther. 7(2), (2005), 125-31.
    • (2005) Curr. Opin. Mol. Ther. , vol.7 , Issue.2 , pp. 125-31
    • Kawasaki, H.1    Taira, K.2
  • 24
    • 8744234971 scopus 로고    scopus 로고
    • RNA-directed DNA methylation
    • Mathieu O., and Bender J., RNA-directed DNA methylation. J Cell Sci. 117, (2004), 4881-8.
    • (2004) J Cell Sci. , vol.117 , pp. 4881-8
    • Mathieu, O.1    Bender, J.2
  • 25
    • 0037370020 scopus 로고    scopus 로고
    • A uniform system for microRNA annotation
    • Ambros V., et al., A uniform system for microRNA annotation. RNA 9, (2003), 277-279.
    • (2003) RNA , vol.9 , pp. 277-279
    • Ambros, V.1
  • 26
    • 0347755643 scopus 로고    scopus 로고
    • The MicroRNA Registry
    • Griffiths-Jones S., The MicroRNA Registry. Nucleic Acids Res. 32 (Database Issue), (2004), D109-D111.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.DATABASE
    • Griffiths-Jones, S.1
  • 30
    • 34548444095 scopus 로고    scopus 로고
    • Features and trend of loss of promoterassociated CpG-islands in the human and mouse genomes
    • Jiang C., Han L., Su B., Li W.H., and Zhao Z., Features and trend of loss of promoterassociated CpG-islands in the human and mouse genomes. Mol Biol Evol. 24(9), (2007), 1991-2000
    • (2007) Mol Biol Evol , vol.24 , Issue.9 , pp. 1991-2000
    • Jiang, C.1    Han, L.2    Su, B.3    Li, W.H.4    Zhao, Z.5
  • 31
    • 40349094597 scopus 로고    scopus 로고
    • MicroRNA-373 induces expression of genes with complementary promoter sequences
    • Place R.F., Li L.C., Pookot D., Noonan E.J., and Dahiya R., MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc Natl Acad Sci. 105(5), (2008), 1608-13.
    • (2008) Proc Natl Acad Sci , vol.105 , Issue.5 , pp. 1608-13
    • Place, R.F.1    Li, L.C.2    Pookot, D.3    Noonan, E.J.4    Dahiya, R.5
  • 32
    • 29644442757 scopus 로고    scopus 로고
    • Genome-wide promoter extraction and analysis in human, mouse, and rat
    • Xuan Z., Zhao F., Wang J., Chen G., and Zhang M.Q., Genome-wide promoter extraction and analysis in human, mouse, and rat. Genome Biol. 6(8), (2005), R72
    • (2005) Genome Biol. , vol.6 , Issue.8
    • Xuan, Z.1    Zhao, F.2    Wang, J.3    Chen, G.4    Zhang, M.Q.5
  • 33
    • 33646886862 scopus 로고    scopus 로고
    • Isochore structures in the chicken genome
    • Gao F. and Zhang C.T., Isochore structures in the chicken genome. FEBS J. 273(8), (2006), 1637-48.
    • (2006) FEBS J , vol.273 , Issue.8 , pp. 1637-48
    • Gao, F.1    Zhang, C.T.2
  • 34
    • 10644283823 scopus 로고    scopus 로고
    • International Chicken Genome Sequencing Consortium, Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • ICGSC
    • ICGSC, International Chicken Genome Sequencing Consortium, Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432, (2004), 695-716.
    • (2004) Nature , vol.432 , pp. 695-716
  • 35
    • 12744271852 scopus 로고    scopus 로고
    • Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes
    • Axelsson E., Webster M.T., Smith N.G., Burt D.W., and Ellegren H., Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res. 15(1), (2005), 120-5.
    • (2005) Genome Res. , vol.15 , Issue.1 , pp. 120-5
    • Axelsson, E.1    Webster, M.T.2    Smith, N.G.3    Burt, D.W.4    Ellegren, H.5
  • 37
    • 0031876009 scopus 로고    scopus 로고
    • Chicken microchromosomes are hyperacetylated, early replicating, and gene rich
    • McQueen H.A., Siriaco G., and Bird A.P., Chicken microchromosomes are hyperacetylated, early replicating, and gene rich. Genome Res. 8(6), (1998), 621-30.
    • (1998) Genome Res , vol.8 , Issue.6 , pp. 621-30
    • McQueen, H.A.1    Siriaco, G.2    Bird, A.P.3
  • 38
    • 0036499523 scopus 로고    scopus 로고
    • DNA methylation at promoter regions regulates the timing of gene activation in Xenopus laevis embryos
    • Stancheva I., El-Maarri O., Walter J., Niveleau A., and Meehan R.R., DNA methylation at promoter regions regulates the timing of gene activation in Xenopus laevis embryos. Dev Biol. 243(1), (2002), 155-65.
    • (2002) Dev Biol , vol.243 , Issue.1 , pp. 155-65
    • Stancheva, I.1    El-Maarri, O.2    Walter, J.3    Niveleau, A.4    Meehan, R.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.