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Volumn 28, Issue 2, 2013, Pages 379-404

Towards a processual microbial ontology

Author keywords

Microbial evolution; Network; Ontology; Process philosophy; Tree of life

Indexed keywords

EVOLUTIONARY BIOLOGY; EVOLUTIONARY THEORY; MICROBIAL ECOLOGY;

EID: 84874578582     PISSN: 01693867     EISSN: 15728404     Source Type: Journal    
DOI: 10.1007/s10539-012-9350-2     Document Type: Review
Times cited : (62)

References (93)
  • 1
    • 2942534292 scopus 로고    scopus 로고
    • LGL: creating a map of protein function with an algorithm for visualizing very large biological networks
    • Adai AT, Date SV, Wieland S, Marcotte EM (2004) LGL: creating a map of protein function with an algorithm for visualizing very large biological networks. J Mol Biol 340(1): 179-190.
    • (2004) J Mol Biol , vol.340 , Issue.1 , pp. 179-190
    • Adai, A.T.1    Date, S.V.2    Wieland, S.3    Marcotte, E.M.4
  • 2
    • 78650789727 scopus 로고    scopus 로고
    • Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets
    • Alperovitch-Lavy A, Sharon I, Rohwer F, Aro EM, Glaser F, Milo R, Nelson N, Beja O (2011) Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets. Environ Microbiol 13(1): 24-32.
    • (2011) Environ Microbiol , vol.13 , Issue.1 , pp. 24-32
    • Alperovitch-Lavy, A.1    Sharon, I.2    Rohwer, F.3    Aro, E.M.4    Glaser, F.5    Milo, R.6    Nelson, N.7    Beja, O.8
  • 3
    • 77956011404 scopus 로고    scopus 로고
    • On the need for integrative Phylogenomics, and some steps toward its creation
    • Bapteste E, Burian RM (2010) On the need for integrative Phylogenomics, and some steps toward its creation. Biol Philos 25: 711-736.
    • (2010) Biol Philos , vol.25 , pp. 711-736
    • Bapteste, E.1    Burian, R.M.2
  • 4
    • 38349128272 scopus 로고    scopus 로고
    • Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny
    • Bapteste E, Susko E, Leigh J, Ruiz-Trillo I, Bucknam J, Doolittle WF (2008) Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny. Mol Biol Evol 25(1): 83-91.
    • (2008) Mol Biol Evol , vol.25 , Issue.1 , pp. 83-91
    • Bapteste, E.1    Susko, E.2    Leigh, J.3    Ruiz-Trillo, I.4    Bucknam, J.5    Doolittle, W.F.6
  • 6
    • 84860155555 scopus 로고    scopus 로고
    • Philosophy and evolution: minding the gap between evolutionary patterns and tree-like patterns
    • In: Anisimova M (ed), Humana Press, New York
    • Bapteste E, Burian RM, Bouchard F (2012) Philosophy and evolution: minding the gap between evolutionary patterns and tree-like patterns. In: Anisimova M (ed) Evolutionary genomics: statistical and computational methods, vol 2. Humana Press, New York, pp 81-110.
    • (2012) Evolutionary genomics: Statistical and computational methods , vol.2 , pp. 81-110
    • Bapteste, E.1    Burian, R.M.2    Bouchard, F.3
  • 8
    • 79960445478 scopus 로고    scopus 로고
    • The 2010 Garrod Lecture: the dimensions of evolution in antibiotic resistance: ex unibus plurum et ex pluribus unum
    • Baquero F (2011) The 2010 Garrod Lecture: the dimensions of evolution in antibiotic resistance: ex unibus plurum et ex pluribus unum. J Antimicrob Chemother 66(8): 1659-1672.
    • (2011) J Antimicrob Chemother , vol.66 , Issue.8 , pp. 1659-1672
    • Baquero, F.1
  • 9
    • 79960563690 scopus 로고    scopus 로고
    • Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli
    • Beauregard-Racine J, Bicep C, Schliep K, Lopez P, Lapointe FJ, Bapteste E (2011) Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli. Biol Direct 6(1): 39.
    • (2011) Biol Direct , vol.6 , Issue.1 , pp. 39
    • Beauregard-Racine, J.1    Bicep, C.2    Schliep, K.3    Lopez, P.4    Lapointe, F.J.5    Bapteste, E.6
  • 10
    • 80054090399 scopus 로고    scopus 로고
    • Mainstreams of horizontal gene exchange in enterobacteria: consideration of the outbreak of enterohemorrhagic E. coli O104:H4 in Germany in 2011
    • Bezuidt O, Pierneef R, Mncube K, Lima-Mendez G, Reva ON (2011) Mainstreams of horizontal gene exchange in enterobacteria: consideration of the outbreak of enterohemorrhagic E. coli O104: H4 in Germany in 2011. PLoS ONE 6(10): e25702.
    • (2011) PLoS ONE , vol.6 , Issue.10
    • Bezuidt, O.1    Pierneef, R.2    Mncube, K.3    Lima-Mendez, G.4    Reva, O.N.5
  • 11
    • 84859510055 scopus 로고    scopus 로고
    • Roles for intrinsic disorder and fuzziness in generating context-specific function in Ultrabithorax, a Hox transcription factor
    • Bondos SE, Hsiao HC (2012) Roles for intrinsic disorder and fuzziness in generating context-specific function in Ultrabithorax, a Hox transcription factor. Adv Exp Med Biol 725: 86-105.
    • (2012) Adv Exp Med Biol , vol.725 , pp. 86-105
    • Bondos, S.E.1    Hsiao, H.C.2
  • 12
    • 77956013078 scopus 로고    scopus 로고
    • Symbiosis, lateral function transfer and the (many) saplings of life
    • Bouchard F (2010) Symbiosis, lateral function transfer and the (many) saplings of life. Biol Philos 25(4): 623-641.
    • (2010) Biol Philos , vol.25 , Issue.4 , pp. 623-641
    • Bouchard, F.1
  • 15
    • 10944248427 scopus 로고    scopus 로고
    • Computing prokaryotic gene ubiquity: rescuing the core from extinction
    • Charlebois RL, Doolittle WF (2004) Computing prokaryotic gene ubiquity: rescuing the core from extinction. Genome Res 14(12): 2469-2477.
    • (2004) Genome Res , vol.14 , Issue.12 , pp. 2469-2477
    • Charlebois, R.L.1    Doolittle, W.F.2
  • 16
    • 77957310893 scopus 로고    scopus 로고
    • Moonlighting enzymes in parasitic protozoa
    • Collingridge PW, Brown RW, Ginger ML (2010) Moonlighting enzymes in parasitic protozoa. Parasitology 137(9): 1467-1475.
    • (2010) Parasitology , vol.137 , Issue.9 , pp. 1467-1475
    • Collingridge, P.W.1    Brown, R.W.2    Ginger, M.L.3
  • 17
    • 33750810896 scopus 로고    scopus 로고
    • The tree of one percent
    • Dagan T, Martin W (2006) The tree of one percent. Genome Biol 7(10): 118.
    • (2006) Genome Biol , vol.7 , Issue.10 , pp. 118
    • Dagan, T.1    Martin, W.2
  • 18
    • 48249151749 scopus 로고    scopus 로고
    • Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
    • Dagan T, Artzy-Randrup Y, Martin W (2008) Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci USA 105(29): 10039-10044.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.29 , pp. 10039-10044
    • Dagan, T.1    Artzy-Randrup, Y.2    Martin, W.3
  • 21
    • 66049089612 scopus 로고    scopus 로고
    • On the origin of prokaryotic species
    • Doolittle WF, Zhaxybayeva O (2009) On the origin of prokaryotic species. Genome Res 19(5): 744-756.
    • (2009) Genome Res , vol.19 , Issue.5 , pp. 744-756
    • Doolittle, W.F.1    Zhaxybayeva, O.2
  • 22
    • 33645961876 scopus 로고    scopus 로고
    • DNA mimicry by proteins
    • Dryden DT, Tock MR (2006) DNA mimicry by proteins. Biochem Soc Trans 34(Pt 2): 317-319.
    • (2006) Biochem Soc Trans , vol.34 , Issue.Pt 2 , pp. 317-319
    • Dryden, D.T.1    Tock, M.R.2
  • 23
    • 79958763366 scopus 로고    scopus 로고
    • 50 ways to build a spindle: the complexity of microtubule generation during mitosis
    • Duncan T, Wakefield JG (2011) 50 ways to build a spindle: the complexity of microtubule generation during mitosis. Chromosome Res 19(3): 321-333.
    • (2011) Chromosome Res , vol.19 , Issue.3 , pp. 321-333
    • Duncan, T.1    Wakefield, J.G.2
  • 25
    • 77951765145 scopus 로고    scopus 로고
    • Varieties of living things: life at the intersection of lineage and metabolism
    • Dupré J, O'Malley MA (2009) Varieties of living things: life at the intersection of lineage and metabolism. Philosophy and Theory in Biology 1: e003.
    • (2009) Philosophy and Theory in Biology , vol.1
    • Dupré, J.1    O'Malley, M.A.2
  • 27
    • 84874555810 scopus 로고    scopus 로고
    • Biological individuality: the case of biofilms
    • doi: 10. 1007/s10539-012-9340-4
    • Ereshefsky M, Pedroso M (2012) Biological individuality: the case of biofilms. Biol Philos. doi: 10. 1007/s10539-012-9340-4.
    • (2012) Biol Philos
    • Ereshefsky, M.1    Pedroso, M.2
  • 28
    • 44449137093 scopus 로고    scopus 로고
    • The microbial engines that drive earth's biogeochemical cycles
    • Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive earth's biogeochemical cycles. Science 320(5879): 1034-1039.
    • (2008) Science , vol.320 , Issue.5879 , pp. 1034-1039
    • Falkowski, P.G.1    Fenchel, T.2    Delong, E.F.3
  • 29
    • 78650051417 scopus 로고    scopus 로고
    • The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks
    • Fondi M, Fani R (2010) The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks. Environ Microbiol 12(12): 3228-3242.
    • (2010) Environ Microbiol , vol.12 , Issue.12 , pp. 3228-3242
    • Fondi, M.1    Fani, R.2
  • 30
    • 77951767484 scopus 로고    scopus 로고
    • Defining life: the virus viewpoint
    • Forterre P (2010) Defining life: the virus viewpoint. Orig Life Evol Biosph 40(2): 151-160.
    • (2010) Orig Life Evol Biosph , vol.40 , Issue.2 , pp. 151-160
    • Forterre, P.1
  • 32
    • 0035954733 scopus 로고    scopus 로고
    • Natural conjugative plasmids induce bacterial biofilm development
    • Ghigo JM (2001) Natural conjugative plasmids induce bacterial biofilm development. Nature 412(6845): 442-445.
    • (2001) Nature , vol.412 , Issue.6845 , pp. 442-445
    • Ghigo, J.M.1
  • 34
    • 84856011484 scopus 로고    scopus 로고
    • Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
    • Greenblum S, Turnbaugh PJ, Borenstein E (2012) Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc Natl Acad Sci USA 109(2): 594-599.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.2 , pp. 594-599
    • Greenblum, S.1    Turnbaugh, P.J.2    Borenstein, E.3
  • 35
    • 77955795400 scopus 로고    scopus 로고
    • Uniting sex and eukaryote origins in an emerging oxygenic world
    • Gross J, Bhattacharya D (2010) Uniting sex and eukaryote origins in an emerging oxygenic world. Biol Direct 5: 53.
    • (2010) Biol Direct , vol.5 , pp. 53
    • Gross, J.1    Bhattacharya, D.2
  • 36
    • 36148972811 scopus 로고    scopus 로고
    • Trouble with lichen: the re-evaluation and re-interpretation of thallus form and fruit body types in the molecular era
    • Grube M, Hawksworth DL (2007) Trouble with lichen: the re-evaluation and re-interpretation of thallus form and fruit body types in the molecular era. Mycol Res 111(Pt 9): 1116-1132.
    • (2007) Mycol Res , vol.111 , Issue.Pt 9 , pp. 1116-1132
    • Grube, M.1    Hawksworth, D.L.2
  • 37
    • 34547754024 scopus 로고    scopus 로고
    • Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates
    • Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rummele SE, Bhattacharya D (2007) Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates. Mol Biol Evol 24(8): 1702-1713.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1702-1713
    • Hackett, J.D.1    Yoon, H.S.2    Li, S.3    Reyes-Prieto, A.4    Rummele, S.E.5    Bhattacharya, D.6
  • 38
    • 1842612577 scopus 로고    scopus 로고
    • Bacterial biofilms: from the natural environment to infectious diseases
    • Hall-Stoodley L, Costerton JW, Stoodley P (2004) Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol 2(2): 95-108.
    • (2004) Nat Rev Microbiol , vol.2 , Issue.2 , pp. 95-108
    • Hall-Stoodley, L.1    Costerton, J.W.2    Stoodley, P.3
  • 39
    • 49149113206 scopus 로고    scopus 로고
    • Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution
    • Hatfull GF, Cresawn SG, Hendrix RW (2008) Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution. Res Microbiol 159(5): 332-339.
    • (2008) Res Microbiol , vol.159 , Issue.5 , pp. 332-339
    • Hatfull, G.F.1    Cresawn, S.G.2    Hendrix, R.W.3
  • 40
    • 66649092982 scopus 로고    scopus 로고
    • Carrying photosynthesis genes increases ecological fitness of cyanophage in silico
    • Hellweger FL (2009) Carrying photosynthesis genes increases ecological fitness of cyanophage in silico. Environ Microbiol 11(6): 1386-1394.
    • (2009) Environ Microbiol , vol.11 , Issue.6 , pp. 1386-1394
    • Hellweger, F.L.1
  • 41
    • 84880153102 scopus 로고    scopus 로고
    • Bacterial moonlighting proteins and bacterial virulence
    • doi:10.1007/82_2011_188
    • Henderson B, Martin A (2011) Bacterial moonlighting proteins and bacterial virulence. Curr Top Microbiol Immunol. doi: 10. 1007/82_2011_188.
    • (2011) Curr Top Microbiol Immunol
    • Henderson, B.1    Martin, A.2
  • 42
    • 78049425463 scopus 로고    scopus 로고
    • Evidence of selection upon genomic GC-content in bacteria
    • Hildebrand F, Meyer A, Eyre-Walker A (2010) Evidence of selection upon genomic GC-content in bacteria. PLoS Genet 6(9): e1001107.
    • (2010) PLoS Genet , vol.6 , Issue.9
    • Hildebrand, F.1    Meyer, A.2    Eyre-Walker, A.3
  • 43
    • 77950369259 scopus 로고    scopus 로고
    • Moonlighting proteins: an intriguing mode of multitasking
    • Huberts DH, van der Klei IJ (2010) Moonlighting proteins: an intriguing mode of multitasking. Biochim Biophys Acta 1803(4): 520-525.
    • (2010) Biochim Biophys Acta , vol.1803 , Issue.4 , pp. 520-525
    • Huberts, D.H.1    van der Klei, I.J.2
  • 46
    • 78751527447 scopus 로고    scopus 로고
    • Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths
    • Kloesges T, Popa O, Martin W, Dagan T (2011) Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths. Mol Biol Evol 28(2): 1057-1074.
    • (2011) Mol Biol Evol , vol.28 , Issue.2 , pp. 1057-1074
    • Kloesges, T.1    Popa, O.2    Martin, W.3    Dagan, T.4
  • 48
    • 27744591844 scopus 로고    scopus 로고
    • On the origin of genomes and cells within inorganic compartments
    • Koonin EV, Martin W (2005) On the origin of genomes and cells within inorganic compartments. Trends Genet 21(12): 647-654.
    • (2005) Trends Genet , vol.21 , Issue.12 , pp. 647-654
    • Koonin, E.V.1    Martin, W.2
  • 49
    • 43049085945 scopus 로고    scopus 로고
    • The eukaryotic tree of life: endosymbiosis takes its TOL
    • Lane CE, Archibald JM (2008) The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol Evol 23(5): 268-275.
    • (2008) Trends Ecol Evol , vol.23 , Issue.5 , pp. 268-275
    • Lane, C.E.1    Archibald, J.M.2
  • 50
    • 77955410887 scopus 로고    scopus 로고
    • The myth of bacterial species and speciation
    • Lawrence JG, Retchless AC (2010) The myth of bacterial species and speciation. Biol Philos 25: 569-588.
    • (2010) Biol Philos , vol.25 , pp. 569-588
    • Lawrence, J.G.1    Retchless, A.C.2
  • 51
    • 3042581065 scopus 로고
    • The strategy of model-building in population biology
    • 1st edn., E. Sober (Ed.), Cambridge: MIT Press
    • Levins R (1984) The strategy of model-building in population biology. In: Sober E (ed) Conceptual issues in evolutionary biology, 1st edn. MIT Press, Cambridge, pp 18-27.
    • (1984) Conceptual Issues in Evolutionary Biology , pp. 18-27
    • Levins, R.1
  • 52
    • 40849126681 scopus 로고    scopus 로고
    • Reticulate representation of evolutionary and functional relationships between phage genomes
    • Lima-Mendez G, van Helden J, Toussaint A, Leplae R (2008) Reticulate representation of evolutionary and functional relationships between phage genomes. Mol Biol Evol 25(4): 762-777.
    • (2008) Mol Biol Evol , vol.25 , Issue.4 , pp. 762-777
    • Lima-Mendez, G.1    van Helden, J.2    Toussaint, A.3    Leplae, R.4
  • 53
    • 61849126837 scopus 로고    scopus 로고
    • Molecular phylogeny: reconstructing the forest
    • Lopez P, Bapteste E (2009) Molecular phylogeny: reconstructing the forest. C R Biol 332(2-3): 171-182.
    • (2009) C R Biol , vol.332 , Issue.2-3 , pp. 171-182
    • Lopez, P.1    Bapteste, E.2
  • 55
    • 78149470831 scopus 로고    scopus 로고
    • Comparison of 61 sequenced Escherichia coli genomes
    • Lukjancenko O, Wassenaar TM, Ussery DW (2010) Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol 60(4): 708-720.
    • (2010) Microb Ecol , vol.60 , Issue.4 , pp. 708-720
    • Lukjancenko, O.1    Wassenaar, T.M.2    Ussery, D.W.3
  • 56
    • 84863496231 scopus 로고    scopus 로고
    • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    • The Heliconius Genome Consortium, (published online) doi: 10. 1038/nature11041
    • Mallet J, The Heliconius Genome Consortium (2012). Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature (published online) doi: 10. 1038/nature11041.
    • (2012) Nature
    • Mallet, J.1
  • 58
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • Martin W, Embley TM (2006) Eukaryotic evolution, changes and challenges. Nature 430: 623-630.
    • (2006) Nature , vol.430 , pp. 623-630
    • Martin, W.1    Embley, T.M.2
  • 59
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • Martin W, Müller M (1998) The hydrogen hypothesis for the first eukaryote. Nature 392(6671): 37-41.
    • (1998) Nature , vol.392 , Issue.6671 , pp. 37-41
    • Martin, W.1    Müller, M.2
  • 65
    • 0031735879 scopus 로고    scopus 로고
    • Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis
    • Moreira D, Lopez-Garcia P (1998) Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. J Mol Evol 47(5): 517-530.
    • (1998) J Mol Evol , vol.47 , Issue.5 , pp. 517-530
    • Moreira, D.1    Lopez-Garcia, P.2
  • 68
    • 50149083715 scopus 로고    scopus 로고
    • Everything is everywhere: but the environment selects': ubiquitous distribution and ecological determinism in microbial biogeography
    • O'Malley MA (2008) 'Everything is everywhere: but the environment selects': ubiquitous distribution and ecological determinism in microbial biogeography. Stud Hist Philos Biol Biomed Sci 39(3): 314-325.
    • (2008) Stud Hist Philos Biol Biomed Sci , vol.39 , Issue.3 , pp. 314-325
    • O'Malley, M.A.1
  • 69
    • 34047190388 scopus 로고    scopus 로고
    • Size doesn't matter: towards a more inclusive philosophy of biology
    • O'Malley MA, Dupré J (2007) Size doesn't matter: towards a more inclusive philosophy of biology. Biol Philos 22: 155-191.
    • (2007) Biol Philos , vol.22 , pp. 155-191
    • O'Malley, M.A.1    Dupré, J.2
  • 70
    • 77955504696 scopus 로고    scopus 로고
    • The phototrophic consortium "Chlorochromatium aggregatum"-a model for bacterial heterologous multicellularity
    • Overmann J (2010) The phototrophic consortium "Chlorochromatium aggregatum"-a model for bacterial heterologous multicellularity. Adv Exp Med Biol 675: 15-29.
    • (2010) Adv Exp Med Biol , vol.675 , pp. 15-29
    • Overmann, J.1
  • 71
    • 79953315166 scopus 로고    scopus 로고
    • Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes
    • Popa O, Hazkani-Covo E, Landan G, Martin W, Dagan T (2011) Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes. Genome Res 21(4): 599-609.
    • (2011) Genome Res , vol.21 , Issue.4 , pp. 599-609
    • Popa, O.1    Hazkani-Covo, E.2    Landan, G.3    Martin, W.4    Dagan, T.5
  • 72
    • 79952201675 scopus 로고    scopus 로고
    • The tree and net components of prokaryote evolution
    • Puigbo P, Wolf YI, Koonin EV (2010) The tree and net components of prokaryote evolution. Genome Biol Evol 2: 745-756.
    • (2010) Genome Biol Evol , vol.2 , pp. 745-756
    • Puigbo, P.1    Wolf, Y.I.2    Koonin, E.V.3
  • 74
    • 33646539782 scopus 로고    scopus 로고
    • Synergistic effects in mixed Escherichia coli biofilms: conjugative plasmid transfer drives biofilm expansion
    • Reisner A, Holler BM, Molin S, Zechner EL (2006) Synergistic effects in mixed Escherichia coli biofilms: conjugative plasmid transfer drives biofilm expansion. J Bacteriol 188(10): 3582-3588.
    • (2006) J Bacteriol , vol.188 , Issue.10 , pp. 3582-3588
    • Reisner, A.1    Holler, B.M.2    Molin, S.3    Zechner, E.L.4
  • 75
    • 35348890199 scopus 로고    scopus 로고
    • Bacterial DNA repair by non-homologous end joining
    • Shuman S, Glickman MS (2007) Bacterial DNA repair by non-homologous end joining. Nat Rev Microbiol 5(11): 852-861.
    • (2007) Nat Rev Microbiol , vol.5 , Issue.11 , pp. 852-861
    • Shuman, S.1    Glickman, M.S.2
  • 76
    • 79960313230 scopus 로고    scopus 로고
    • Lateral genetic transfer and the construction of genetic exchange communities
    • Skippington E, Ragan MA (2011a) Lateral genetic transfer and the construction of genetic exchange communities. FEMS Microbiol Rev 35(5): 707-735.
    • (2011) FEMS Microbiol Rev , vol.35 , Issue.5 , pp. 707-735
    • Skippington, E.1    Ragan, M.A.2
  • 77
    • 80054976329 scopus 로고    scopus 로고
    • Within-species lateral genetic transfer and the evolution of transcriptional regulation in Escherichia coli and Shigella
    • Skippington E, Ragan MA (2011b) Within-species lateral genetic transfer and the evolution of transcriptional regulation in Escherichia coli and Shigella. BMC Genomics 29(12): 532.
    • (2011) BMC Genomics , vol.29 , Issue.12 , pp. 532
    • Skippington, E.1    Ragan, M.A.2
  • 78
    • 84863227681 scopus 로고    scopus 로고
    • Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella a genomes
    • Skippington E, Ragan MA (2012) Evolutionary dynamics of small RNAs in 27 Escherichia coli and Shigella a genomes. Genome Biol Evol. 4(3): 330-345.
    • (2012) Genome Biol Evol. , vol.4 , Issue.3 , pp. 330-345
    • Skippington, E.1    Ragan, M.A.2
  • 79
    • 83055186603 scopus 로고    scopus 로고
    • Ecology drives a global network of gene exchange connecting the human microbiome
    • Smillie CS, Smith MB, Friedman J, Cordero OX, David LA, Alm EJ (2011) Ecology drives a global network of gene exchange connecting the human microbiome. Nature 480: 241-244.
    • (2011) Nature , vol.480 , pp. 241-244
    • Smillie, C.S.1    Smith, M.B.2    Friedman, J.3    Cordero, O.X.4    David, L.A.5    Alm, E.J.6
  • 80
    • 36249021315 scopus 로고    scopus 로고
    • Genome-wide experimental determination of barriers to horizontal gene transfer
    • Sorek R, Zhu Y, Creevey CJ, Francino MP, Bork P, Rubin EM (2007) Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318(5855): 1449-1452.
    • (2007) Science , vol.318 , Issue.5855 , pp. 1449-1452
    • Sorek, R.1    Zhu, Y.2    Creevey, C.J.3    Francino, M.P.4    Bork, P.5    Rubin, E.M.6
  • 82
    • 33747369803 scopus 로고    scopus 로고
    • Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
    • Sullivan MB, Lindell D, Lee JA, Thompson LR, Bielawski JP, Chisholm SW (2006) Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol 4(8): e234.
    • (2006) PLoS Biol , vol.4 , Issue.8
    • Sullivan, M.B.1    Lindell, D.2    Lee, J.A.3    Thompson, L.R.4    Bielawski, J.P.5    Chisholm, S.W.6
  • 85
    • 33845895973 scopus 로고    scopus 로고
    • Self-splicing of a group IIC intron: 5′ exon recognition and alternative 5′ splicing events implicate the stem-loop motif of a transcriptional terminator
    • Toor N, Robart AR, Christianson J, Zimmerly S (2006) Self-splicing of a group IIC intron: 5′ exon recognition and alternative 5′ splicing events implicate the stem-loop motif of a transcriptional terminator. Nucleic Acids Res 34(22): 6461-6471.
    • (2006) Nucleic Acids Res , vol.34 , Issue.22 , pp. 6461-6471
    • Toor, N.1    Robart, A.R.2    Christianson, J.3    Zimmerly, S.4
  • 86
    • 68049117072 scopus 로고    scopus 로고
    • Persistence pays: how viruses promote host group survival
    • Villarreal LP (2009) Persistence pays: how viruses promote host group survival. Curr Opin Microbiol 12(4): 467-472.
    • (2009) Curr Opin Microbiol , vol.12 , Issue.4 , pp. 467-472
    • Villarreal, L.P.1
  • 89
    • 0025019643 scopus 로고
    • Evolutionary questions: the "progenote"
    • Woese CR (1990) Evolutionary questions: the "progenote". Science 247(4944): 789.
    • (1990) Science , vol.247 , Issue.4944 , pp. 789
    • Woese, C.R.1
  • 91
    • 0032028624 scopus 로고    scopus 로고
    • On the best evolutionary rate for phylogenetic analysis
    • Yang Z (1998) On the best evolutionary rate for phylogenetic analysis. Syst Biol 47(1): 125-133.
    • (1998) Syst Biol , vol.47 , Issue.1 , pp. 125-133
    • Yang, Z.1
  • 92
    • 0028797990 scopus 로고
    • DNA mimics a self-protein that may be a target for some anti-DNA antibodies in systemic lupus erythematosus
    • Zack DJ, Yamamoto K, Wong AL, Stempniak M, French C, Weisbart RH (1995) DNA mimics a self-protein that may be a target for some anti-DNA antibodies in systemic lupus erythematosus. J Immunol 154(4): 1987-1994.
    • (1995) J Immunol , vol.154 , Issue.4 , pp. 1987-1994
    • Zack, D.J.1    Yamamoto, K.2    Wong, A.L.3    Stempniak, M.4    French, C.5    Weisbart, R.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.