-
2
-
-
77952938726
-
Global dynamics of proteins: Bridging between structure and function
-
Bahar I., Lezon T. R., Yang L. W., Eyal E. 2010. Global dynamics of proteins: Bridging between structure and function. Annu. Rev. Biophys. 39, 23-42.
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 23-42
-
-
Bahar, I.1
Lezon, T.R.2
Yang, L.W.3
Eyal, E.4
-
3
-
-
70350340728
-
The role of dynamic conformational ensembles in biomolecular recognition
-
Boehr D. D., Nussinov R., Wright P. E. 2009. The role of dynamic conformational ensembles in biomolecular recognition. Nature Chem. Biol. 5, 789-796.
-
(2009)
Nature Chem. Biol.
, vol.5
, pp. 789-796
-
-
Boehr, D.D.1
Nussinov, R.2
Wright, P.E.3
-
4
-
-
37249032102
-
Dynamic personalities of proteins
-
Henzler-Wildman K., Kern D. 2007. Dynamic personalities of proteins. Nature. 450, 964-972.
-
(2007)
Nature.
, vol.450
, pp. 964-972
-
-
Henzler-Wildman, K.1
Kern, D.2
-
5
-
-
36849039429
-
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
-
Henzler-Wildman K. A., Lei M., Thai V., Kerns S. J., Karplus M., Kern D. 2007. A hierarchy of timescales in protein dynamics is linked to enzyme catalysis. Nature. 450, 913-916.
-
(2007)
Nature.
, vol.450
, pp. 913-916
-
-
Henzler-Wildman, K.A.1
Lei, M.2
Thai, V.3
Kerns, S.J.4
Karplus, M.5
Kern, D.6
-
6
-
-
0032769661
-
Structural principles governing domain motions in proteins
-
Hayward S. 1999. Structural principles governing domain motions in proteins. Proteins: Struct. Funct. Bioinform. 36, 425-435.
-
(1999)
Proteins: Struct. Funct. Bioinform.
, vol.36
, pp. 425-435
-
-
Hayward, S.1
-
7
-
-
0035702099
-
Building blocks, hinge-bending motions and protein topology
-
Sinha N., Tsa C., Nussinov R. 2001. Building blocks, hinge-bending motions and protein topology. J. Biomol. Struct. Dyn. 19, 369-380.
-
(2001)
J. Biomol. Struct. Dyn.
, vol.19
, pp. 369-380
-
-
Sinha, N.1
Tsa, C.2
Nussinov, R.3
-
8
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
Gerstein M., Lesk A. M., Chothia C. 1994. Structural mechanisms for domain movements in proteins. Biochemistry. 33, 6739-6749.
-
(1994)
Biochemistry.
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
9
-
-
70149090164
-
The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding
-
Bakan A., Bahar I. 2009. The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding. Proc. Natl. Acad. Sci. U. S. A. 106, 14349-14354.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 14349-14354
-
-
Bakan, A.1
Bahar, I.2
-
10
-
-
36849048228
-
Intrinsic motions along an enzymatic reaction trajectory
-
Henzler-Wildman K. A., Thai V., Lei M., Ott M., Wolf-Watz M., Fenn T., Pozharski E., Wilson M. A., Petsko G. A., Karplus M., Hubner C. G., Kern D. 2007. Intrinsic motions along an enzymatic reaction trajectory. Nature. 450, 838-844.
-
(2007)
Nature.
, vol.450
, pp. 838-844
-
-
Henzler-Wildman, K.A.1
Thai, V.2
Lei, M.3
Ott, M.4
Wolf-Watz, M.5
Fenn, T.6
Pozharski, E.7
Wilson, M.A.8
Petsko, G.A.9
Karplus, M.10
Hubner, C.G.11
Kern, D.12
-
11
-
-
27744499156
-
Intrinsic dynamics of an enzyme underlies catalysis
-
Eisenmesser E. Z., Millet O., Labeikovsky W., Korzhnev D. M., Wolf-Watz M., Bosco D. A., Skalicky J. J., Kay L. E., Kern D. 2005. Intrinsic dynamics of an enzyme underlies catalysis. Nature. 438, 117-121.
-
(2005)
Nature.
, vol.438
, pp. 117-121
-
-
Eisenmesser, E.Z.1
Millet, O.2
Labeikovsky, W.3
Korzhnev, D.M.4
Wolf-Watz, M.5
Bosco, D.A.6
Skalicky, J.J.7
Kay, L.E.8
Kern, D.9
-
12
-
-
13544256790
-
Src protein-tyrosine kinase structure and regulation
-
Roskoski R., Jr. 2004. Src protein-tyrosine kinase structure and regulation. Biochem. Biophys. Res. Commun. 324, 1155-1164.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.324
, pp. 1155-1164
-
-
Roskoski Jr., R.1
-
13
-
-
0037013143
-
The conformational plasticity of protein kinases
-
Huse M., Kuriyan J. 2002. The conformational plasticity of protein kinases. Cell. 109, 275-282.
-
(2002)
Cell.
, vol.109
, pp. 275-282
-
-
Huse, M.1
Kuriyan, J.2
-
14
-
-
60549089572
-
Inherent flexibility determines the transition mechanisms of the EF-hands of calmodulin
-
Tripathi S., Portman J. J. 2009. Inherent flexibility determines the transition mechanisms of the EF-hands of calmodulin. Proc. Natl. Acad. Sci. U. S. A. 106, 2104-2109.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 2104-2109
-
-
Tripathi, S.1
Portman, J.J.2
-
15
-
-
0023900891
-
Flexibility of the DNA-binding domains of trp repressor
-
Lawson C. L., Zhang R. G., Schevitz R. W., Otwinowski Z., Joachimiak A., Sigler P. B. 1988. Flexibility of the DNA-binding domains of trp repressor. Proteins. 3, 18-31.
-
(1988)
Proteins.
, vol.3
, pp. 18-31
-
-
Lawson, C.L.1
Zhang, R.G.2
Schevitz, R.W.3
Otwinowski, Z.4
Joachimiak, A.5
Sigler, P.B.6
-
16
-
-
80052160144
-
Principal component analysis based methods in bioinformatics studies
-
Ma S., Dai Y. 2011. Principal component analysis based methods in bioinformatics studies. Brief. Bioinform. 12, 714-722.
-
(2011)
Brief. Bioinform.
, vol.12
, pp. 714-722
-
-
Ma, S.1
Dai, Y.2
-
17
-
-
0028877423
-
Harmonicity and anharmonicity in protein dynamics: A normal mode analysis and principal component analysis
-
Hayward S., Kitao A., Go N. 1995. Harmonicity and anharmonicity in protein dynamics: A normal mode analysis and principal component analysis. Proteins. 23, 177-186.
-
(1995)
Proteins.
, vol.23
, pp. 177-186
-
-
Hayward, S.1
Kitao, A.2
Go, N.3
-
18
-
-
84861840905
-
Classification of rhodopsin structures by modern methods of structural bioinformatics
-
Novikov G. V., Sivozhelezov V. S., Shebanova A. S., Shaitan K. V. 2012. Classification of rhodopsin structures by modern methods of structural bioinformatics. Biochemistry (Moscow). 77, 544-554.
-
(2012)
Biochemistry (Moscow).
, vol.77
, pp. 544-554
-
-
Novikov, G.V.1
Sivozhelezov, V.S.2
Shebanova, A.S.3
Shaitan, K.V.4
-
19
-
-
73149115513
-
Physical arguments for distance-weighted interactions in elastic network models for proteins
-
Hinsen K. 2009. Physical arguments for distance-weighted interactions in elastic network models for proteins. Proc. Natl. Acad. Sci. U. S. A. 106, E128.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
-
-
Hinsen, K.1
-
21
-
-
25844431698
-
Coarse-grained normal mode analysis in structural biology
-
Bahar I., Rader A. J. 2005. Coarse-grained normal mode analysis in structural biology. Curr. Opin. Struct. Biol. 15, 586-592.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 586-592
-
-
Bahar, I.1
Rader, A.J.2
-
22
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
Hinsen K. 1998. Analysis of domain motions by approximate normal mode calculations. Proteins: Struct. Funct. Genet. 33, 417-429.
-
(1998)
Proteins: Struct. Funct. Genet.
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
23
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
Hinsen K. 1998. Analysis of domain motions by approximate normal mode calculations. Proteins. 33, 417-429.
-
(1998)
Proteins.
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
24
-
-
0141865614
-
Transcon-formations of the SERCA1 Ca-ATPase: A normal mode study
-
Reuter N., Hinsen K., Lacapere J. J. 2003. Transcon-formations of the SERCA1 Ca-ATPase: A normal mode study. Biophys. J. 85, 2186-2197.
-
(2003)
Biophys. J.
, vol.85
, pp. 2186-2197
-
-
Reuter, N.1
Hinsen, K.2
Lacapere, J.J.3
-
25
-
-
6344231648
-
Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data
-
Temiz N. A., Meirovitch E., Bahar I. 2004. Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data. Proteins. 57, 468-480.
-
(2004)
Proteins.
, vol.57
, pp. 468-480
-
-
Temiz, N.A.1
Meirovitch, E.2
Bahar, I.3
-
26
-
-
0036782103
-
Inhibitor binding alters the directions of domain motions in HIV-1 reverse transcriptase
-
Temiz N. A., Bahar I. 2002. Inhibitor binding alters the directions of domain motions in HIV-1 reverse transcriptase. Proteins. 49, 61-70.
-
(2002)
Proteins.
, vol.49
, pp. 61-70
-
-
Temiz, N.A.1
Bahar, I.2
-
27
-
-
84874374352
-
Molecular dynamics of bending fluctuations of protein secondary structure elements
-
Shaitan K. V., Mikhailyuk M. G., Leont'ev K. M., Saraikin S. S., Belyakov A. A. 2002. Molecular dynamics of bending fluctuations of protein secondary structure elements. Biophysics (Moscow). 47, 386-393.
-
(2002)
Biophysics (Moscow).
, vol.47
, pp. 386-393
-
-
Shaitan, K.V.1
Mikhailyuk, M.G.2
Leont'ev, K.M.3
Saraikin, S.S.4
Belyakov, A.A.5
|