-
1
-
-
0018802524
-
Space-filling models of kinase clefts and conformational change
-
Anderson CM, Zucker FH, Steitz T. Space-filling models of kinase clefts and conformational change. Science 1979;204:375-380.
-
(1979)
Science
, vol.204
, pp. 375-380
-
-
Anderson, C.M.1
Zucker, F.H.2
Steitz, T.3
-
2
-
-
0029150760
-
Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme
-
Zhang X, Wozniak JA, Matthews BW. Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme. J Mol Biol 1995;250:527-552.
-
(1995)
J Mol Biol
, vol.250
, pp. 527-552
-
-
Zhang, X.1
Wozniak, J.A.2
Matthews, B.W.3
-
3
-
-
0025047629
-
A mutant T4 lysozyme displays five different crystal conformations
-
Faber HR, Matthews BW. A mutant T4 lysozyme displays five different crystal conformations. Nature 1990;348:263-266.
-
(1990)
Nature
, vol.348
, pp. 263-266
-
-
Faber, H.R.1
Matthews, B.W.2
-
4
-
-
0028335096
-
Structural mechanisms for domain movements in proteins
-
Gerstein M, Lesk AM, Chothia C. Structural mechanisms for domain movements in proteins. Biochemistry 1994;33:6739-6749.
-
(1994)
Biochemistry
, vol.33
, pp. 6739-6749
-
-
Gerstein, M.1
Lesk, A.M.2
Chothia, C.3
-
5
-
-
0030883755
-
Protein domain movements: Detection of rigid domains and visualization of hinges in comparisons of atomic coordinates
-
Wriggers W, Schulten K. Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates. Proteins 1997;29:1-14.
-
(1997)
Proteins
, vol.29
, pp. 1-14
-
-
Wriggers, W.1
Schulten, K.2
-
6
-
-
0003057319
-
-
New York: Oxford University Press
-
Lesk AM. Protein architecture. New York: Oxford University Press; 1991.
-
(1991)
Protein Architecture
-
-
Lesk, A.M.1
-
7
-
-
0032006209
-
Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme
-
Hayward S, Berendsen HJC. Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme. Proteins 1998;30:144-154.
-
(1998)
Proteins
, vol.30
, pp. 144-154
-
-
Hayward, S.1
Berendsen, H.J.C.2
-
9
-
-
0032080528
-
Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data
-
de Groot BL, Hayward S, van Aalten DMF, Berendsen HJC. Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data. Proteins 1998;31:116-127.
-
(1998)
Proteins
, vol.31
, pp. 116-127
-
-
De Groot, B.L.1
Hayward, S.2
Van Aalten, D.M.F.3
Berendsen, H.J.C.4
-
10
-
-
0026679890
-
The three-dimensional structure of an intact monoclonal antibody for canine lymphoma
-
Harris LJ, Larson SB, Hasel KW, Day J, Greenwood A, McPherson A. The three-dimensional structure of an intact monoclonal antibody for canine lymphoma. Nature 1992;360:369-372.
-
(1992)
Nature
, vol.360
, pp. 369-372
-
-
Harris, L.J.1
Larson, S.B.2
Hasel, K.W.3
Day, J.4
Greenwood, A.5
McPherson, A.6
-
11
-
-
0027769953
-
Conformational flexibility in glutamate dehydrogenase: Role of water in substrate recognition and catalysis
-
Stillman TJ, Baker BJ, Britton KL, Rice DW. Conformational flexibility in glutamate dehydrogenase: role of water in substrate recognition and catalysis. J Mol Biol 1993;234:1131-1139.
-
(1993)
J Mol Biol
, vol.234
, pp. 1131-1139
-
-
Stillman, T.J.1
Baker, B.J.2
Britton, K.L.3
Rice, D.W.4
-
13
-
-
0026575572
-
Crystal and molecular structure of human annexin V after refinement: Implications for structure, membrane binding and ion channel formation of the annexin family of proteins
-
Huber R, Berendes R, Burger A, et al. Crystal and molecular structure of human annexin V after refinement: implications for structure, membrane binding and ion channel formation of the annexin family of proteins. J Mol Biol 1992;223:683-704.
-
(1992)
J Mol Biol
, vol.223
, pp. 683-704
-
-
Huber, R.1
Berendes, R.2
Burger, A.3
-
14
-
-
0030888546
-
Model free methods to analyze domain motions in proteins from simulation. A comparison of a normal mode analysis and a molecular dynamics simulation of lysozyme
-
Hayward S, Kitao A, Berendsen HJC. Model free methods to analyze domain motions in proteins from simulation. A comparison of a normal mode analysis and a molecular dynamics simulation of lysozyme. Proteins 1997;27:425-437.
-
(1997)
Proteins
, vol.27
, pp. 425-437
-
-
Hayward, S.1
Kitao, A.2
Berendsen, H.J.C.3
-
16
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
17
-
-
0025398721
-
WHAT IF: A molecular modeling and drug design program
-
Vriend G. WHAT IF: a molecular modeling and drug design program. J Mol Graph 1990;8:52-56.
-
(1990)
J Mol Graph
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
18
-
-
0023661228
-
Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 resolution
-
Weber IT, Steitz TA. Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 resolution. J Mol Biol 1987;198:311-326.
-
(1987)
J Mol Biol
, vol.198
, pp. 311-326
-
-
Weber, I.T.1
Steitz, T.A.2
-
19
-
-
0026751404
-
X-ray structure refinement and comparison of three forms of mitochondrial aspartate-aminotransferase
-
McPhalen CA, Vincent MG, Jansonius JN. X-ray structure refinement and comparison of three forms of mitochondrial aspartate-aminotransferase. J Mol Biol 1992;225:495-517.
-
(1992)
J Mol Biol
, vol.225
, pp. 495-517
-
-
McPhalen, C.A.1
Vincent, M.G.2
Jansonius, J.N.3
-
20
-
-
0023717499
-
Coenzyme-induced conformational changes in glyceraldehyde-3-phosphate dehydrogenase from bacillus stearothermophilus
-
Skarzynski T, Wonacott AJ. Coenzyme-induced conformational changes in glyceraldehyde-3-phosphate dehydrogenase from bacillus stearothermophilus. J Mol Biol 1988;203:1097-1118.
-
(1988)
J Mol Biol
, vol.203
, pp. 1097-1118
-
-
Skarzynski, T.1
Wonacott, A.J.2
-
21
-
-
0030729838
-
An extensively modified versiton of MOLSCRIPT that includes greatly enhanced coloring capabilities
-
Esnoug RM. An extensively modified versiton of MOLSCRIPT that includes greatly enhanced coloring capabilities. J Mol Graph 1997;15:132-134.
-
(1997)
J Mol Graph
, vol.15
, pp. 132-134
-
-
Esnoug, R.M.1
-
22
-
-
0028057108
-
Raster3D Version 2.0. A program for photorealistic molecular graphics
-
Merrit EA, Murphy MEP. Raster3D Version 2.0. A program for photorealistic molecular graphics. Acta Crystallogr D 1994;50:869-873.
-
(1994)
Acta Crystallogr D
, vol.50
, pp. 869-873
-
-
Merrit, E.A.1
Murphy, M.E.P.2
-
23
-
-
0028338283
-
The closed conformation of a highly flexible protein: The structure of E. Coli adenylate kinase with bound AMP and AMPNP
-
Berry MB, Meador B, Bilderback T, Liang P, Glaser M, Phillips JGN. The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPNP. Proteins 1994;19:183-198.
-
(1994)
Proteins
, vol.19
, pp. 183-198
-
-
Berry, M.B.1
Meador, B.2
Bilderback, T.3
Liang, P.4
Glaser, M.5
Phillips, J.G.N.6
-
24
-
-
0029644168
-
Adenylate kinase motions during catalysis: An energetic counterweight balancing substrate binding
-
Mueller CW, Schlauderer GJ, Reinstein J, Schulz GE. Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding. Structure 1996;4:147-156.
-
(1996)
Structure
, vol.4
, pp. 147-156
-
-
Mueller, C.W.1
Schlauderer, G.J.2
Reinstein, J.3
Schulz, G.E.4
-
25
-
-
0019880506
-
Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9 A resolution
-
Eklund J, Samaha JP, Wallen L, Branden CI, Akeson A, Jones TA. Structure of a triclinic ternary complex of horse liver alcohol dehydrogenase at 2.9 A resolution. J Mol Biol 1981;146:561-587.
-
(1981)
J Mol Biol
, vol.146
, pp. 561-587
-
-
Eklund, J.1
Samaha, J.P.2
Wallen, L.3
Branden, C.I.4
Akeson, A.5
Jones, T.A.6
-
26
-
-
0021099424
-
Three-dimensional structure of isonicotinimidylated liver alcohol dehydrogenase
-
Plapp BV, Eklund H, Jones TA, Branden C. Three-dimensional structure of isonicotinimidylated liver alcohol dehydrogenase. J Biol Chem 1983;258:5537-5547.
-
(1983)
J Biol Chem
, vol.258
, pp. 5537-5547
-
-
Plapp, B.V.1
Eklund, H.2
Jones, T.A.3
Branden, C.4
-
27
-
-
0026767761
-
Domain closure in mitochondrial aspartate aminotransferase
-
McPhalen CA, Vincent MG, Picot D, Jansonius JN, Lesk AM, Chothia C. Domain closure in mitochondrial aspartate aminotransferase. J Mol Biol 1992;227:197-213.
-
(1992)
J Mol Biol
, vol.227
, pp. 197-213
-
-
McPhalen, C.A.1
Vincent, M.G.2
Picot, D.3
Jansonius, J.N.4
Lesk, A.M.5
Chothia, C.6
-
28
-
-
0000127673
-
Sowadski JM. 2.2Å refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor
-
Zheng J, Trafney EA, Knighton DR, Nguyen HX, Taylor SS, Ten Eyck LF, Sowadski JM. 2.2Å refined crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MnATP and a peptide inhibitor. Acta Crystallogr D 1993;49: 362-364.
-
(1993)
Acta Crystallogr D
, vol.49
, pp. 362-364
-
-
Zheng, J.1
Trafney, E.A.2
Knighton, D.R.3
Nguyen, H.X.4
Taylor, S.S.5
Ten Eyck, L.F.6
-
29
-
-
0001328416
-
Structure of the mammalian catalytic subunit of cAMP-dependent protein kinase and inhibitor peptide displays an open conformation
-
Karlsson R, Zheng JH, Xuong NH, Taylor SS, Sowadski JM. Structure of the mammalian catalytic subunit of cAMP-dependent protein kinase and inhibitor peptide displays an open conformation. Acta Crystallogr D 1993;49:381-388.
-
(1993)
Acta Crystallogr D
, vol.49
, pp. 381-388
-
-
Karlsson, R.1
Zheng, J.H.2
Xuong, N.H.3
Taylor, S.S.4
Sowadski, J.M.5
-
31
-
-
0026794065
-
Target enzyme recognition by calmodulin: 2.4Å structure of a calmodulin-peptide complex
-
Meador WE, Means AR, Quiocho FA. Target enzyme recognition by calmodulin: 2.4Å structure of a calmodulin-peptide complex. Science 1992;257:1251-1255.
-
(1992)
Science
, vol.257
, pp. 1251-1255
-
-
Meador, W.E.1
Means, A.R.2
Quiocho, F.A.3
-
32
-
-
0020483375
-
Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7 angstroms resolution
-
Remington S, Wiegand G, Huber R. Crystallographic refinement and atomic models of two different forms of citrate synthase at 2.7 and 1.7 angstroms resolution. J Mol Biol 1982;158:111-152.
-
(1982)
J Mol Biol
, vol.158
, pp. 111-152
-
-
Remington, S.1
Wiegand, G.2
Huber, R.3
-
33
-
-
0028077637
-
Refined structure of dimeric diptheria toxin at 2.0Å resolution
-
Bennett MR, Choe S, Eisenberg D. Refined structure of dimeric diptheria toxin at 2.0Å resolution. Prot Sci 1994;3:1444-1463.
-
(1994)
Prot Sci
, vol.3
, pp. 1444-1463
-
-
Bennett, M.R.1
Choe, S.2
Eisenberg, D.3
-
34
-
-
0028077639
-
Refined structure of monomeric diptheria toxin at 2.3Å resolution
-
Bennett MR, Eisenberg D. Refined structure of monomeric diptheria toxin at 2.3Å resolution. Prot Sci 1994;3:1464-1475.
-
(1994)
Prot Sci
, vol.3
, pp. 1464-1475
-
-
Bennett, M.R.1
Eisenberg, D.2
-
35
-
-
0024438910
-
High-resolution X-ray diffraction study of the complex between endothiapepsin and an oligopeptide inhibitor: Analysis of the inhibitor binding and description of the rigid-body shift in the enzyme
-
Sali A, Veerapandian B, Cooper JB, Foundling SI, Hoover DJ, Blundell TL. High-resolution X-ray diffraction study of the complex between endothiapepsin and an oligopeptide inhibitor: analysis of the inhibitor binding and description of the rigid-body shift in the enzyme. EMBO J 1989;8:2179-2188.
-
(1989)
EMBO J
, vol.8
, pp. 2179-2188
-
-
Sali, A.1
Veerapandian, B.2
Cooper, J.B.3
Foundling, S.I.4
Hoover, D.J.5
Blundell, T.L.6
-
36
-
-
0021767550
-
The active site of aspartic proteinases
-
Pearl L, Blundell T. The active site of aspartic proteinases. FEBS Lett 1984;174:96-101.
-
(1984)
FEBS Lett
, vol.174
, pp. 96-101
-
-
Pearl, L.1
Blundell, T.2
-
37
-
-
0028206019
-
High resolution structures of holo and apo formate dehydrogenase
-
Lamzin VS, Dauter Z, Popov VO, Harutyunyan EH, Wilson KS. High resolution structures of holo and apo formate dehydrogenase. J Mol Biol 1994;236:759-785.
-
(1994)
J Mol Biol
, vol.236
, pp. 759-785
-
-
Lamzin, V.S.1
Dauter, Z.2
Popov, V.O.3
Harutyunyan, E.H.4
Wilson, K.S.5
-
38
-
-
0023644310
-
Structure of hologlyceraldehyde-3-phosphate dehydrogenase from bacillus stearothermophilus at 1.8Å resolution
-
Skarzynski T, Moody PCE, Wonacott AJ. Structure of hologlyceraldehyde-3-phosphate dehydrogenase from bacillus stearothermophilus at 1.8Å resolution. J Mol Biol 1987;193:171-187.
-
(1987)
J Mol Biol
, vol.193
, pp. 171-187
-
-
Skarzynski, T.1
Moody, P.C.E.2
Wonacott, A.J.3
-
39
-
-
13244249836
-
The structure of pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion pair networks in maintaining enzyme stability at extreme temperatures
-
Yip KSP, Stillman TJ, Britton KL, et al. The structure of pyrococcus furiosus glutamate dehydrogenase reveals a key role for ion pair networks in maintaining enzyme stability at extreme temperatures. Structure 1995;3:1147-1158.
-
(1995)
Structure
, vol.3
, pp. 1147-1158
-
-
Yip, K.S.P.1
Stillman, T.J.2
Britton, K.L.3
-
40
-
-
0017807668
-
Sequencing a protein by X-ray crystallography. II. Refinement of yeast hexokinase B coordinates and sequence at 2.1Å resolution
-
Anderson CM, Stenkamp RE, Steitz TA. Sequencing a protein by X-ray crystallography. II. Refinement of yeast hexokinase B coordinates and sequence at 2.1Å resolution. J Mol Biol 1978;123: 15-33.
-
(1978)
J Mol Biol
, vol.123
, pp. 15-33
-
-
Anderson, C.M.1
Stenkamp, R.E.2
Steitz, T.A.3
-
41
-
-
0000539364
-
Glucose induced conformational change in yeast hexokinase
-
Benett WS Jr, Steitz TA. Glucose induced conformational change in yeast hexokinase. Proc Natl Acad Sci USA 1978;75:4848-4852.
-
(1978)
Proc Natl Acad Sci USA
, vol.75
, pp. 4848-4852
-
-
Benett W.S., Jr.1
Steitz, T.A.2
-
42
-
-
0025273624
-
Apolactoferrin structure demonstrates ligand-induced conformational change in transferrins
-
Anderson BF, Baker HM, Norris GE, Rumball SV, Baker EN. Apolactoferrin structure demonstrates ligand-induced conformational change in transferrins. Nature 1990;344:784-787.
-
(1990)
Nature
, vol.344
, pp. 784-787
-
-
Anderson, B.F.1
Baker, H.M.2
Norris, G.E.3
Rumball, S.V.4
Baker, E.N.5
-
43
-
-
0027235488
-
Three-dimensional structures of the periplasmic lysine/ arginine/ornithine-binding protein with and without a ligand
-
Oh B-H, Pandit J, Kang C-H, Nikaido K, Gokcen S, Ames GF-L, Kim S-H. Three-dimensional structures of the periplasmic lysine/ arginine/ornithine-binding protein with and without a ligand. J Biol Chem 1993;268:11348-11355.
-
(1993)
J Biol Chem
, vol.268
, pp. 11348-11355
-
-
Oh, B.-H.1
Pandit, J.2
Kang, C.-H.3
Nikaido, K.4
Gokcen, S.5
Ames, G.F.-L.6
Kim, S.-H.7
-
44
-
-
0026493924
-
Crystallographic evidence of a large ligand-induced hinge-twist motion between the two domains of the maltodextrin binding protein involved in active transport and chemotaxis
-
Sharff AJ, Rodseth LE, Spurlino JC, Quiocho FA. Crystallographic evidence of a large ligand-induced hinge-twist motion between the two domains of the maltodextrin binding protein involved in active transport and chemotaxis. Biochemistry 1992;31:10657-10663.
-
(1992)
Biochemistry
, vol.31
, pp. 10657-10663
-
-
Sharff, A.J.1
Rodseth, L.E.2
Spurlino, J.C.3
Quiocho, F.A.4
-
45
-
-
0025754301
-
The 23Å resolution structure of the maltose-or maltodextrin-binding protein, a primary receptor of bacterial active transport and chemotaxis
-
Spurlino JC, Lu G-Y, Quiocho FA. The 23Å resolution structure of the maltose-or maltodextrin-binding protein, a primary receptor of bacterial active transport and chemotaxis. J Biol Chem 1991;266: 5202-5219.
-
(1991)
J Biol Chem
, vol.266
, pp. 5202-5219
-
-
Spurlino, J.C.1
Lu, G.-Y.2
Quiocho, F.A.3
-
46
-
-
0024215739
-
Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products
-
Shirakihara Y, Evans PR. Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products. J Mol Biol 1988;204:973-994.
-
(1988)
J Mol Biol
, vol.204
, pp. 973-994
-
-
Shirakihara, Y.1
Evans, P.R.2
-
47
-
-
0028049441
-
Structures of ternary complexes of rat DNA polymerase β, a DNA template-primer, and ddCTP
-
Pelletier H, Sawaya MR, Kumar A, Wilson SH, Kraut J. Structures of ternary complexes of rat DNA polymerase β, a DNA template-primer, and ddCTP. Science 1994;264:1891-1903.
-
(1994)
Science
, vol.264
, pp. 1891-1903
-
-
Pelletier, H.1
Sawaya, M.R.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
48
-
-
0028136070
-
Crystal structure of rat DNA polymerase beta: Evidence for a common polymerase mechanism
-
Sawaya MR, Pelletier H, Kumar A, Wilson SH, Kraut J. Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science 1994;264:1930-1935.
-
(1994)
Science
, vol.264
, pp. 1930-1935
-
-
Sawaya, M.R.1
Pelletier, H.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
50
-
-
0021112807
-
Structure of tomato bushy stunt virus: The virus particle at 2.9 A resolution
-
Olson AJ, Bricogne G, Harrison SC. Structure of tomato bushy stunt virus: the virus particle at 2.9 A resolution. J Mol Biol 1983;171:61-93.
-
(1983)
J Mol Biol
, vol.171
, pp. 61-93
-
-
Olson, A.J.1
Bricogne, G.2
Harrison, S.C.3
-
51
-
-
0023900891
-
Flexibility of the DNA-binding domains of the trp repressor
-
Lawson CL, Zhang R, Schevitz RW, Otwinowski Z, Joachimiak A, Sigler PB. Flexibility of the DNA-binding domains of the trp repressor. Proteins 1988;3:18-31.
-
(1988)
Proteins
, vol.3
, pp. 18-31
-
-
Lawson, C.L.1
Zhang, R.2
Schevitz, R.W.3
Otwinowski, Z.4
Joachimiak, A.5
Sigler, P.B.6
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