Single molecule wobbling in cylindrical mesopores

Journal of Physical Chemistry C

Volumn 117, Issue 7, 2013, Pages 3668-3673

  Pramanik, Rajib ^a   Ito, Takashi ^a   Higgins, Daniel A ^a  

^a KANSAS STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULARLY POLARIZED LIGHT; CYLINDRICAL MESOPORES; DUAL-POLARIZATIONS; EMISSION DICHROISM; ENSEMBLE-AVERAGED; FLUORESCENT PROBES; LONG AXIS; MESO-PORES; MESOPOROUS SILICA FILM; MOLECULAR CONFINEMENT; ORIENTATIONAL MOTION; ORTHOGONAL POLARIZATIONS; PERYLENEDIIMIDES; PORE DIAMETERS; QUANTITATIVE MEASURES; ROD-SHAPED; SINGLE MOLECULE; SINGLE-MOLECULE TRACKING; THEORETICAL EXPRESSION; VIDEO MICROSCOPY; WIDE-FIELD;

POLARIZATION;

MOLECULES;

EID: 84874166543     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/jp400479w     Document Type: Article

References (37)

1. Saxton, M. J. Lateral Diffusion in an Archipelago Biophys. J. 1993, 64, 1766-1780
2. Kirstein, J.; Platschek, B.; Jung, C.; Brown, R.; Bein, T.; Braeuchle, C. Exploration of Nanostructured Channel Systems with Single Molecule Probes Nat. Mater. 2007, 6, 303-310
3. Zuerner, A.; Kirstein, J.; Doeblinger, M.; Braeuchle, C.; Bein, T. Visualizing Single-Molecule Diffusion in Mesoporous Materials Nature 2007, 450, 705-709
4. Ito, S.; Fukuya, S.; Kusumi, T.; Ishibashi, Y.; Miyasaka, H.; Goto, Y.; Ikai, M.; Tani, T.; Inagaki, S. Microscopic Structure and Mobility of Guest Molecules in Mesoporous Hybrid Organosilica: Evaluation with Single-Molecule Tracking J. Phys. Chem. C 2009, 113, 11884-11891
5. Tran Ba, K. H.; Everett, T. A.; Ito, T.; Higgins, D. A. Trajectory Angle Determination in One Dimensional Single Molecule Tracking Data by Orthogonal Regression Analysis Phys. Chem. Chem. Phys. 2011, 13, 1827-1835
6. Park, S. C.; Ito, T.; Higgins, D. A. Single Molecule Tracking Studies of Flow-Aligned Mesoporous Silica Monoliths: Aging-Time Dependence of Pore Order J. Phys. Chem. B 2012, 10.1021/jp303586h
7. Ruehle, B.; Davies, M.; Lebold, T.; Braeuchle, C.; Bein, T. Highly Oriented Mesoporous Silica Channels Synthesized in Microgrooves and Visualized with Single-Molecule Diffusion ACS Nano 2012, 6, 1948-1960
8. Tran-Ba, K.-H.; Finley, J. J.; Higgins, D. A.; Ito, T. Single-Molecule Tracking Studies of Millimeter-Scale Cylindrical Domain Alignment in Polystyrene-Poly(ethylene oxide) Diblock Copolymer Films Induced by Solvent Vapor Penetration J. Phys. Chem. Lett. 2012, 3, 1968-1973
9. Yorulmaz, M.; Kiraz, A.; Demirel, A. L. Motion of Single Terrylene Molecules in Confined Channels of Poly(butadiene)-Poly(ethylene oxide) Diblock Copolymer J. Phys. Chem. B 2009, 113, 9640-9643
10. Liao, Y.; Yang, S. K.; Koh, K.; Matzger, A. J.; Biteen, J. S. Heterogeneous Single-Molecule Diffusion in One-, Two-, and Three-Dimensional Microporous Coordination Polymers: Directional, Trapped, and Immobile Guests Nano Lett. 2012, 12, 3080-3085
11. Kirkeminde, A. W.; Torres, T.; Ito, T.; Higgins, D. A. Multiple Diffusion Pathways in Pluronic F127 Mesophases Revealed by Single Molecule Tracking and Fluorescence Correlation Spectroscopy J. Phys. Chem. B 2011, 115, 12736-12743
12. Jung, C.; Kirstein, J.; Platschek, B.; Bein, T.; Budde, M.; Frank, I.; Muellen, K.; Michaelis, J.; Braeuchle, C. Diffusion of Oriented Single Molecules with Switchable Mobility in Networks of Long Unidimensional Nanochannels J. Am. Chem. Soc. 2008, 130, 1638-1648
13. Betzig, E.; Chichester, R. J. Single Molecules Observed by Near-Field Scanning Optical Microscopy Science 1993, 262, 1422-1425
14. Ha, T.; Enderle, Th.; Chemla, D. S.; Selvin, P. R.; Weiss, S. Single Molecule Dynamics Studied by Polarization Modulation Phys. Rev. Lett. 1996, 77, 3979-3982
15. Ha, T.; Laurence, T. A.; Chemla, D. S.; Weiss, S. Polarization Spectroscopy of Single Fluorescent Molecules J. Phys. Chem. B 1999, 103, 6839-6850
16. Weston, K. D.; Goldner, L. S. Orientation Imaging and Reorientation Dynamics of Single Dye Molecules J. Phys. Chem. B 2001, 105, 3453-3462
17. Dickson, R. M.; Norris, D. J.; Moerner, W. E. Simultaneous Imaging of Individual Molecule Aligned Both Parallel and Perpendicular to the Optic Axis Phys. Rev. Lett. 1998, 81, 5322-5325
18. Bartko, A. P.; Dickson, R. M. Three-Dimensional Orientations of Polymer-Bound Single Molecules J. Phys. Chem. B 1999, 103, 3053-3056
19. Boehmer, M.; Enderlein, J. Orientation Imaging of Single Molecules by Wide-Field Epifluorescence Microscopy J. Opt. Soc. Am. B 2003, 20, 554-559
20. Backlund, M. P.; Lew, M. D.; Backer, A. S.; Sahl, S. J.; Grover, G.; Agrawal, A.; Piestun, R.; Moerner, W. E. Simultaneous, Accurate Measurement of the 3D Position and Orientation of Single Molecules Proc. Natl. Acad. Sci. U. S. A. 2012, 109, 19087-19092
21. Fourkas, J. T. Rapid Determination of the Three-Dimensional Orientation of Single Molecules Opt. Lett. 2001, 26, 211-213
22. Sick, B.; Hecht, B.; Novotny, L. Orientational Imaging of Single Molecules by Annular Illumination Phys. Rev. Lett. 2000, 85, 4482-4485
23. Hu, D.; Lu, H. P. Single-Molecule Nanosecond Anisotropy Dynamics of Tethered Protein Motions J. Phys. Chem. B 2003, 107, 618-626
24. Rosenberg, S. A.; Quinlan, M. E.; Forkey, J. N.; Goldman, Y. E. Rotational Motions of Macro-Molecules by Single-Molecule Fluorescence Microscopy Acc. Chem. Res. 2005, 38, 583-593
25. Harms, G. S.; Sonnleitner, M.; Schutz, G. J.; Gruber, H. J.; Schmidt, T. Single-Molecule Anisotropy Imaging Biophys. J. 1999, 77, 2864-2870
26. Jung, C.; Schwaderer, P.; Dethlefsen, M.; Koehn, R.; Michaelis, J.; Braeuchle, C. Visualization of the Self-Assembly of Silica Nanochannels Reveals Growth Mechanism Nat. Nanotechnol. 2011, 6, 87-92
27. Fu, Y.; Ye, F.; Sanders, W. G.; Collinson, M. M.; Higgins, D. A. Single Molecule Spectroscopy Studies of Diffusion in Mesoporous Silica Thin Films J. Phys. Chem. B 2006, 110, 9164-9170
28. Ye, F.; Higgins, D. A.; Collinson, M. M. Probing Chemical Interactions at the Single Molecule Level in Mesoporous Silica Thin Films J. Phys. Chem. C 2007, 111, 6772-6780
29. Struijk, C. W.; Sieval, A. B.; Dakhorst, J. E. J.; van Dijk, M.; Kimkes, P.; Koehorst, R. B. M.; Donker, H.; Schaafsma, T. J.; Picken, S. J.; van de Craats, A. M. Liquid Crystalline Perylene Diimides: Architecture and Charge Carrier Mobilities J. Am. Chem. Soc. 2000, 122, 11057-11066
30. Beck, J. S.; Vartuli, J. C.; Roth, W. J.; Leonowicz, M. E.; Kresge, C. T.; Schmitt, K. D.; Chu, C. T.-W.; Olson, D. H.; Sheppard, E. W.; McCullen, S. B. A New Family of Mesoporous Molecular Sieves Prepared with Liquid Crystal Templates J. Am. Chem. Soc. 1992, 114, 10834-10843
31. Tang, Y.; Cook, T. A.; Cohen, A. E. Limits on Fluorescence Detected Circular Dichroism of Single Helicene Molecules J. Phys. Chem. A 2009, 113, 6213-6216
32. Penninck, L.; De Visschere, P.; Beeckman, J.; Neyts, K. Dipole Radiation within One-Dimensional Anisotropic Microcavities: a Simulation Method Opt. Express 2011, 19, 18558-18576
33. Peiris, F. C.; Hatton, B. D.; Ozin, G. A.; Perovic, D. D. Anisotropy in Periodic Mesoporous Silica and Organosilica Films Studied by Generalized Ellipsometry Appl. Phys. Lett. 2005, 87, 241902
34. Yildiz, A.; Forkey, J. N.; McKinney, S. A.; Ha, T.; Goldman, Y. E.; Selvin, P. R. Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5 nm Localization Science 2003, 300, 2061-2065
35. Lebold, T.; Michaelis, J.; Braeuchle, C. The Complexity of Mesoporous Silica Nanomaterials Unravelled by Single Molecule Microscopy Phys. Chem. Chem. Phys. 2011, 13, 5017-5033
36. Ober, R. J.; Ram, S.; Ward, E. S. Localization Accuracy in Single-Molecule Microscopy Biophys. J. 2004, 86, 1185-1200
37. Thompson, R. E.; Larson, D. R.; Webb, W. W. Precise Nanometer Localization Analysis for Individual Fluorescent Probes Biophys. J. 2002, 82, 2775-2783