Localization Accuracy in Single-Molecule Microscopy

Biophysical Journal

Volumn 86, Issue 2, 2004, Pages 1185-1200

  Ober, Raimund J ^a,b   Ram, Sripad ^b,c   Ward, E Sally ^b  

^a The University of Texas at Dallas   (United States)

^b UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^c UNIVERSITY OF TEXAS AT ARLINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; MICROSCOPY; MONTE CARLO METHOD; PRACTICE GUIDELINE; QUANTITATIVE ANALYSIS;

MARTES PENNANTI;

EID: 1142291717     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(04)74193-4     Document Type: Article

References (36)

1. Betzig, E. 1995. Proposed method for molecular optical imaging. Opt. Lett. 20:237-239.
2. Bobroff, N. 1986. Position measurement with a resolution and noise limited instrument. Rev. Sci. Instrum. 57:1152-1157.
3. Born, M., and E. Wolf. (1999). Principles of Optics. Cambridge University Press, Cambridge, UK.
4. Chalfie, M., Y. Tu, G. Euskirchen, W. W. Ward, and D. C. Prasher. 1994. Green fluorescent protein as a marker for gene expression. Science. 263:802-805.
5. Cheezum, M. K., W. F. Walker, and W. H. Guilford. 2001. Quantitative comparision of algorithms for tracking single fluorescent particles. Biophys. J. 81:2378-2388.
6. Coleman, T., M. A. Branch, and A. Grace. (1999). MATLAB Optimization Toolbox User Manual, Version 2. The Mathworks Inc, Natick, MA.
7. Coleman, T., M. A. Branch, and A. Grace. 2000. MATLAB Programming Reference Manual, Version 6. The Mathworks Inc, Natick, MA.
8. Ghosh, R. N., and W. W. Webb. 1994. Automated detection and tracking of individual and clustered cell surface low density lipoprotein receptor molecules. Biophys. J. 66:1301-1318.
9. Goulian, M., and S. M. Simon. 2000. Tracking single proteins within cells. Biophys. J. 79:2188-2198.
10. 2+ channels in live cells. Biophys. J. 81:2639-2646.
11. Janesick, J. R. 2000. Scientific Charge-Coupled Devices. SPIE Press, Bellingham, WA.
12. Kay, S. M. 1993. Fundamentals of Statistical Signal Processing. Prentice Hall PTR, Upper Saddle River, NJ.
13. Kubitscheck, U., O. Kückmann, T. Kues, and R. Peters. 2000. Imaging and tracking single GFP molecules in solution. Biophys. J. 78:2170-2179.
14. Kues, T., R. Peters, and U. Kubitscheck. 2001. Visualization and tracking of single protein molecules in the cell nucleus. Biophys. J. 80:2954-2967.
15. Martin, D. S., M. B. Forstner, and J. A. Käs. 2002. Apparent subdiffusion inherent to single particle tracking. Biophys. J. 83:2109-2117.
16. Pierce, D. W., N. Hom-Booher, and R. D. Vale. 1997. Imaging individual green fluorescent proteins. Nature. 388:338.
17. Rao, C. R. (1965). Linear Statistical Inference and its Applications. John Wiley & Sons, New York.
18. th ed. Academic Press, St. Louis, MO.
19. Santos, A., and I. T. Young. 2000. Model-based resolution: applying the theory in quantitative microscopy. Appl. Opt. 39:2948-2958.
20. Saxton, M. J., and K. Jacobson. 1997. Single particle tracking: applications to membrane dynamics. Annu. Rev. Biophys. Biomol. Struct. 26:373-399.
21. Schmidt, T., G. J. Schütz, W. Baumgartner, H. J. Gruber, and H. Schindler. 1995. Characterization of photophysics and mobility of single molecules in a fluid lipid membrane. J. Phys. Chem. 99:17662-17668.
22. Schütz, G. J., G. Kada, V. P. Pastushenko, and H. Schindler. 2000a. Properties of lipid microdomains in a muscle cell membrane visualized by single molecule microscopy. EMBO J. 19:892-901.
23. Schütz, G. J., H. J. Gruber, H. Schindler, and T. Schmidt. 1997a. Fluorophores for single molecule microscopy. J. Luminescence. 72-74:18-21.
24. Schütz, G. J., H. Schindler, and T. Schmidt, 1997b. Single molecule microscopy on model membranes reveals anomalous diffusion. Biophys. J. 73:1073-1080.
25. Schütz, G. J., M. Sonnleitner, P. Hinterdorfer, and H. Schindler. 2000b. Single molecule microscopy of biomembranes (review). Mol. Membr. Biol. 17:17-29.
26. Schütz, G. J., W. Trabesinger, and T. Schmidt. 1998. Direct observation of ligand colocalization on individual receptor molecules. Biophys. J. 74:2223-2226.
27. Smith, P. R., I. E. G. Morrison, K. M. Wilson, N. Fernandez, and R. J. Cherry. 1999. Anomalous diffusion of major histocompatibility complex class I molecules on HeLa cells determined by single particle tracking. Biophys. J. 76:3331-3344.
28. Snyder, D. L., A. M. Hammoud, and R. L. White. 1993. Image recovery from data acquired with a charge coupled device camera. J. Opt. Soc. Am. A. 10:1014-1023.
29. Snyder, D. L., C. W. Helstrom, A. D. Lanterman, and R. L. White. 1995. Compensation for read out noise in charge coupled device images. J. Opt. Soc. Am. A. 12:272-283.
30. Snyder, D. L., and M. I. Miller. (1991). Random Point Processes in Time and Space. Springer Verlag, New York.
31. Thompson, R. E., D. R. Larson, and W. W. Webb. 2002. Precise nanometer localization analysis for individual fluorescent probes. Biophys. J. 82:2775-2783.
32. Vale, R. D., T. Funatsu, D. W. Pierce, L. Romberg, Y. Harada, and T. Yanagida. 1996. Direct observation of single kinesin molecules moving along microtubules. Nature. 380:451-453.
33. Watson, G. N. (1958). A Treatise on the Theory of Bessel Functions. Cambridge University Press, Cambridge, UK.
34. Weiss, S. 1999. Fluorescence spectroscopy of single biomolecules. Science. 283:1676-1683.
35. Yildiz, A., J. N. Forkey, S. A. McKinney, T. Ha, Y. E. Goldman, and P. R. Selvin. 2003. Myosin V walks hand-over-hand: single fluoropore imaging with 1. 5 nm localization. Science. 300:2061-2065.
36. Zacks, S. (1971). The Theory of Statistical Inference. John Wiley and Sons, Hoboken, NJ.