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Volumn 8, Issue 2, 2013, Pages

Association of RNAs with Bacillus subtilis Hfq

Author keywords

[No Author keywords available]

Indexed keywords

ANTITOXIN; BACTERIAL RNA; COMPLEMENTARY RNA; MESSENGER RNA; PROTEIN HFQ; RNA BINDING PROTEIN; SMALL REGULATORY RNA; UNCLASSIFIED DRUG;

EID: 84874025965     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055156     Document Type: Article
Times cited : (57)

References (76)
  • 1
    • 80053019485 scopus 로고    scopus 로고
    • Regulation by small RNAs in bacteria: expanding frontiers
    • Storz G, Vogel J, Wassarman KM, (2011) Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell 43: 880-891.
    • (2011) Mol Cell , vol.43 , pp. 880-891
    • Storz, G.1    Vogel, J.2    Wassarman, K.M.3
  • 2
    • 77958028354 scopus 로고    scopus 로고
    • Regulatory RNA in Bacterial Pathogens
    • Papenfort K, Vogel J, (2010) Regulatory RNA in Bacterial Pathogens. Cell Host and Microbe 8: 116-27.
    • (2010) Cell Host and Microbe , vol.8 , pp. 116-127
    • Papenfort, K.1    Vogel, J.2
  • 3
    • 84874077891 scopus 로고    scopus 로고
    • A rough guide to the non-coding RNA world of Salmonella
    • Vogel J, (2009) A rough guide to the non-coding RNA world of Salmonella. Curr Opin Microbiol 12: 536-546.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 536-546
    • Vogel, J.1
  • 4
    • 84863924309 scopus 로고    scopus 로고
    • Bacterial small RNA regulators: Versatile roles and rapidly evolving variations
    • Gottesman S, Storz G, (2010) Bacterial small RNA regulators: Versatile roles and rapidly evolving variations. Cold Spring Harb Perspect Biol (3): 303798.
    • (2010) Cold Spring Harb Perspect Biol , Issue.3 , pp. 303798
    • Gottesman, S.1    Storz, G.2
  • 5
    • 79960433506 scopus 로고    scopus 로고
    • Hfq and its constellation of RNA
    • Vogel J, Luisi BF, (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9: 578-589.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 578-589
    • Vogel, J.1    Luisi, B.F.2
  • 6
    • 1642565815 scopus 로고    scopus 로고
    • The bacterial Sm-like protein Hfq: a key player in RNA transactions
    • Valentin-Hansen P, Eriksen M, Udesen C, (2004) The bacterial Sm-like protein Hfq: a key player in RNA transactions. Mol Microbiol 51: 1525-1533.
    • (2004) Mol Microbiol , vol.51 , pp. 1525-1533
    • Valentin-Hansen, P.1    Eriksen, M.2    Udesen, C.3
  • 7
    • 75249100904 scopus 로고    scopus 로고
    • The role of Hfq in bacterial pathogens
    • Chao Y, Vogel J, (2010) The role of Hfq in bacterial pathogens. Curr Opin Microbiol 13: 24-33.
    • (2010) Curr Opin Microbiol , vol.13 , pp. 24-33
    • Chao, Y.1    Vogel, J.2
  • 8
    • 33845713571 scopus 로고    scopus 로고
    • The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
    • Sittka A, Pfeiffer V, Tedin K, Vogel J, (2007) The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol 63: 193-217.
    • (2007) Mol Microbiol , vol.63 , pp. 193-217
    • Sittka, A.1    Pfeiffer, V.2    Tedin, K.3    Vogel, J.4
  • 9
    • 77951519861 scopus 로고    scopus 로고
    • A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA
    • Maki K, Morita T, Otaka H, Aiba H, (2010) A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA. Mol Microbiol 76: 782-792.
    • (2010) Mol Microbiol , vol.76 , pp. 782-792
    • Maki, K.1    Morita, T.2    Otaka, H.3    Aiba, H.4
  • 11
    • 79958095005 scopus 로고    scopus 로고
    • Rapid binding and release of Hfq from ternary complexes during RNA annealing
    • Hopkins JF, Panja S, Woodson SA, (2011) Rapid binding and release of Hfq from ternary complexes during RNA annealing. Nucleic Acids Res 39: 5193-5202.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5193-5202
    • Hopkins, J.F.1    Panja, S.2    Woodson, S.A.3
  • 12
    • 79958146262 scopus 로고    scopus 로고
    • Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing
    • Hwang W, Arluison V, Hohng S, (2011) Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing. Nucleic Acids Res 39: 5131-5139.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5131-5139
    • Hwang, W.1    Arluison, V.2    Hohng, S.3
  • 13
    • 72049095718 scopus 로고    scopus 로고
    • Structure of Escherichia coli Hfq bound to polyadenylate RNA
    • Link TM, Valentin-Hansen P, Brennan RG, (2009) Structure of Escherichia coli Hfq bound to polyadenylate RNA. Proc Natl Acad Sci USA 106: 19292-19297.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 19292-19297
    • Link, T.M.1    Valentin-Hansen, P.2    Brennan, R.G.3
  • 14
    • 68249156618 scopus 로고    scopus 로고
    • Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
    • Pfeiffer V, Papenfort K, Lucchini S, Hinton JC, Vogel J, (2009) Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol 16: 840-846.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 840-846
    • Pfeiffer, V.1    Papenfort, K.2    Lucchini, S.3    Hinton, J.C.4    Vogel, J.5
  • 15
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters L, Storz G, (2010) Regulatory RNAs in bacteria. Cell 136: 615-628.
    • (2010) Cell , vol.136 , pp. 615-628
    • Waters, L.1    Storz, G.2
  • 16
    • 62849101179 scopus 로고    scopus 로고
    • Global systems-level analysis of Hfq SmpB deletion mutants in Salmonella: implications for virulence and global protein translation
    • Ansong C, Yoon H, Porwolik S, Mottz-Brewer H, Petritis BO, et al. (2009) Global systems-level analysis of Hfq SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS ONE 4: e4809.
    • (2009) PLoS ONE , vol.4
    • Ansong, C.1    Yoon, H.2    Porwolik, S.3    Mottz-Brewer, H.4    Petritis, B.O.5
  • 17
    • 70349736084 scopus 로고    scopus 로고
    • Experimental approaches for the discovery and charaterization of regulatory small RNA
    • Sharma CM, Vogel J, (2009) Experimental approaches for the discovery and charaterization of regulatory small RNA. Curr Opin Microbiol 12: 536-546.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 536-546
    • Sharma, C.M.1    Vogel, J.2
  • 20
    • 34250656639 scopus 로고    scopus 로고
    • RNomics: identification and function of small non-protein-coding RNAs in model organisms
    • Huttenhofer A, (2006) RNomics: identification and function of small non-protein-coding RNAs in model organisms. Cold Spring Harb Symp Quant Biol 71: 135-140.
    • (2006) Cold Spring Harb Symp Quant Biol , vol.71 , pp. 135-140
    • Huttenhofer, A.1
  • 21
    • 55549099601 scopus 로고    scopus 로고
    • Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatics tools
    • Sonnleitner E, Sorger-Domenigg T, Madej MJ, Findeiss S, Hackermuller J, et al. (2008) Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatics tools. Microbiol 154: 3175-3187.
    • (2008) Microbiol , vol.154 , pp. 3175-3187
    • Sonnleitner, E.1    Sorger-Domenigg, T.2    Madej, M.J.3    Findeiss, S.4    Hackermuller, J.5
  • 22
    • 77950356238 scopus 로고    scopus 로고
    • Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes
    • Nielsen JS, Lei LK, Ebersbach T, Olsen AS, Klitgaard JK, et al. (2010) Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes. Nucleic Acids Res 38: 907-919.
    • (2010) Nucleic Acids Res , vol.38 , pp. 907-919
    • Nielsen, J.S.1    Lei, L.K.2    Ebersbach, T.3    Olsen, A.S.4    Klitgaard, J.K.5
  • 23
    • 50849105413 scopus 로고    scopus 로고
    • Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
    • Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, et al. (2008) Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet 4: 21000163.
    • (2008) PLoS Genet , vol.4 , pp. 21000163
    • Sittka, A.1    Lucchini, S.2    Papenfort, K.3    Sharma, C.M.4    Rolle, K.5
  • 24
    • 73849103559 scopus 로고    scopus 로고
    • An overview of RNAs with regulatory functions in Gram-positive bacteria
    • Romby P, Charpentier E, (2010) An overview of RNAs with regulatory functions in Gram-positive bacteria. Cell Mol Life Sci 67: 217-237.
    • (2010) Cell Mol Life Sci , vol.67 , pp. 217-237
    • Romby, P.1    Charpentier, E.2
  • 25
    • 73849116916 scopus 로고    scopus 로고
    • A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
    • Geissmann T, Chevalier C, Cros MJ, Boisset S, Fechter P, et al. (2009) A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation. Nucleic Acids Res 37: 7339-7357.
    • (2009) Nucleic Acids Res , vol.37 , pp. 7339-7357
    • Geissmann, T.1    Chevalier, C.2    Cros, M.J.3    Boisset, S.4    Fechter, P.5
  • 26
    • 78049393967 scopus 로고    scopus 로고
    • Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
    • Bohn C, Rigoulay C, Chabelskaya S, Sharma CM, Marchais A, et al. (2010) Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism. Nucleic Acids Res 38: 6620-6636.
    • (2010) Nucleic Acids Res , vol.38 , pp. 6620-6636
    • Bohn, C.1    Rigoulay, C.2    Chabelskaya, S.3    Sharma, C.M.4    Marchais, A.5
  • 27
    • 70350159135 scopus 로고    scopus 로고
    • The transcriptionally active regions in the genome of Bacillus subtilis
    • Rasmussen S, Nielsen HB, Jarmer H, (2009) The transcriptionally active regions in the genome of Bacillus subtilis. Mol Microbiol 73: 1043-1057.
    • (2009) Mol Microbiol , vol.73 , pp. 1043-1057
    • Rasmussen, S.1    Nielsen, H.B.2    Jarmer, H.3
  • 28
    • 67649268395 scopus 로고    scopus 로고
    • The Listeria transcriptional landscape from saprophytism to virulence
    • Toledo-Arana A, Dussurget O, Nikitis G, Sesto N, Guet-Revillet H, et al. (2009) The Listeria transcriptional landscape from saprophytism to virulence. Nature 459: 950-956.
    • (2009) Nature , vol.459 , pp. 950-956
    • Toledo-Arana, A.1    Dussurget, O.2    Nikitis, G.3    Sesto, N.4    Guet-Revillet, H.5
  • 29
    • 50149103524 scopus 로고    scopus 로고
    • The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins
    • Gaballa A, Antelmann H, Aguilar C, Khakh SK, Song KB, et al. (2008) The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins. Proc Natl Acad Sci USA 105: 11927-11932.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 11927-11932
    • Gaballa, A.1    Antelmann, H.2    Aguilar, C.3    Khakh, S.K.4    Song, K.B.5
  • 30
    • 84861368192 scopus 로고    scopus 로고
    • The FsrA sRNA and FbpB protein mediate the iron-dependent induction of the Bacillus subtilis lutABC iron-sulfur-containing oxidases
    • Smaldone GT, Antelmann H, Gaballa A, Helmann JD, (2012) The FsrA sRNA and FbpB protein mediate the iron-dependent induction of the Bacillus subtilis lutABC iron-sulfur-containing oxidases. J Bacteriol 194: 2586-2593.
    • (2012) J Bacteriol , vol.194 , pp. 2586-2593
    • Smaldone, G.T.1    Antelmann, H.2    Gaballa, A.3    Helmann, J.D.4
  • 31
    • 34247109118 scopus 로고    scopus 로고
    • Hfq structure, function and ligand binding
    • Brennan RG, Link TM, (2007) Hfq structure, function and ligand binding. Curr Opin Microbiol 10: 125-1233.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 125-1233
    • Brennan, R.G.1    Link, T.M.2
  • 32
    • 84857839806 scopus 로고    scopus 로고
    • Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamers: insight into RNA-binding properties of bacterial Hfq
    • Someya T, Baba S, Fujimoto M, Kawai G, Kumasaka T, et al. (2012) Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamers: insight into RNA-binding properties of bacterial Hfq. Nucleic Acids Res 40: 1856-1867.
    • (2012) Nucleic Acids Res , vol.40 , pp. 1856-1867
    • Someya, T.1    Baba, S.2    Fujimoto, M.3    Kawai, G.4    Kumasaka, T.5
  • 33
  • 34
    • 84859229689 scopus 로고    scopus 로고
    • Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs
    • Durand S, Gilet L, Bessières P, Nicolas P, Condon C, (2012) Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet 8: 21002520.
    • (2012) PLoS Genet , vol.8 , pp. 21002520
    • Durand, S.1    Gilet, L.2    Bessières, P.3    Nicolas, P.4    Condon, C.5
  • 35
    • 84857683425 scopus 로고    scopus 로고
    • Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
    • Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, et al. (2012) Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis. Science 335: 1103-1106.
    • (2012) Science , vol.335 , pp. 1103-1106
    • Nicolas, P.1    Mäder, U.2    Dervyn, E.3    Rochat, T.4    Leduc, A.5
  • 36
    • 84874064597 scopus 로고    scopus 로고
    • Small untranslated RNA antitoxin in Bacillus subtilis
    • Silvaggi JM, Perkins JB, Losick R, (2005) Small untranslated RNA antitoxin in Bacillus subtilis. J Bacteriol 188: 532-541.
    • (2005) J Bacteriol , vol.188 , pp. 532-541
    • Silvaggi, J.M.1    Perkins, J.B.2    Losick, R.3
  • 37
    • 77951619556 scopus 로고    scopus 로고
    • Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families
    • Fozo EM, Makorova KS, Shabaline SA, Yutin N, Koonin EV, et al. (2010) Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families. Nucleic Acid Res 38: 3743-3759.
    • (2010) Nucleic Acid Res , vol.38 , pp. 3743-3759
    • Fozo, E.M.1    Makorova, K.S.2    Shabaline, S.A.3    Yutin, N.4    Koonin, E.V.5
  • 38
    • 63449136664 scopus 로고    scopus 로고
    • Extracytoplasmic function sigma factors regulate expression of the Bacillus subtilis yabE gene via a cis-acting antisense RNA
    • Eiamphungporn W, Helmann JD, (2009) Extracytoplasmic function sigma factors regulate expression of the Bacillus subtilis yabE gene via a cis-acting antisense RNA. J Bacteriol 191: 1101-1105.
    • (2009) J Bacteriol , vol.191 , pp. 1101-1105
    • Eiamphungporn, W.1    Helmann, J.D.2
  • 39
    • 33749165741 scopus 로고    scopus 로고
    • The small untranslated RNA, SR1, from the Bacillus subtilis genome is involved in the regulation of arginine catabolism
    • Heidrich N, Chinali A, Gerth U, Brantl S, (2006) The small untranslated RNA, SR1, from the Bacillus subtilis genome is involved in the regulation of arginine catabolism. Mol Microbiol 62: 520-536.
    • (2006) Mol Microbiol , vol.62 , pp. 520-536
    • Heidrich, N.1    Chinali, A.2    Gerth, U.3    Brantl, S.4
  • 40
    • 33746561248 scopus 로고    scopus 로고
    • Inhibition of rot translation by RNAIII, a key feature of agr function
    • Geisinger E, Adhikari RP, Jin R, Ross HF, Novick RP, (2006) Inhibition of rot translation by RNAIII, a key feature of agr function. Mol Microbiol 61: 1038-1048.
    • (2006) Mol Microbiol , vol.61 , pp. 1038-1048
    • Geisinger, E.1    Adhikari, R.P.2    Jin, R.3    Ross, H.F.4    Novick, R.P.5
  • 42
    • 78349305147 scopus 로고    scopus 로고
    • C-terminally truncated derivatives of Escherichia coli Hfq are proficient in riboregulation
    • Olsen AS, Moller-Jensen J, Brennan RG, Valentin-Hansen P, (2010) C-terminally truncated derivatives of Escherichia coli Hfq are proficient in riboregulation. J Mol Biol 404: 173-182.
    • (2010) J Mol Biol , vol.404 , pp. 173-182
    • Olsen, A.S.1    Moller-Jensen, J.2    Brennan, R.G.3    Valentin-Hansen, P.4
  • 43
    • 0036714801 scopus 로고    scopus 로고
    • Predicted structure and phyletic distribution of the RNA-binding protein Hfq
    • Sun XG, Zhulin I, Wartell RM, (2002) Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Res 30: 3662-3671.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3662-3671
    • Sun, X.G.1    Zhulin, I.2    Wartell, R.M.3
  • 45
    • 68949147832 scopus 로고    scopus 로고
    • The Acinetobacter baylyi Hfq gene encodes a large protein with an unusual C terminus
    • Schilling D, Gerischer U, (2009) The Acinetobacter baylyi Hfq gene encodes a large protein with an unusual C terminus. J Bacteriol 191: 5553-5562.
    • (2009) J Bacteriol , vol.191 , pp. 5553-5562
    • Schilling, D.1    Gerischer, U.2
  • 48
    • 57149111586 scopus 로고    scopus 로고
    • Small RNA binding to 5′ mRNA coding region inhibits translation initiation
    • Bouvier M, Sharma CM, Mika F, Nierhaus KH, Vogel J, (2008) Small RNA binding to 5′ mRNA coding region inhibits translation initiation. Mol Cell 32: 827-837.
    • (2008) Mol Cell , vol.32 , pp. 827-837
    • Bouvier, M.1    Sharma, C.M.2    Mika, F.3    Nierhaus, K.H.4    Vogel, J.5
  • 50
    • 84867577054 scopus 로고    scopus 로고
    • An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs
    • Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J, (2012) An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs. EMBO J 31: 4005-4019.
    • (2012) EMBO J , vol.31 , pp. 4005-4019
    • Chao, Y.1    Papenfort, K.2    Reinhardt, R.3    Sharma, C.M.4    Vogel, J.5
  • 51
    • 34250625752 scopus 로고    scopus 로고
    • Genetic control by cis-acting regulatory RNAs in Bacillus subtilis: general principles and prospects for discovery
    • Irnov, Kertsburg A, Winkler WC, (2006) Genetic control by cis-acting regulatory RNAs in Bacillus subtilis: general principles and prospects for discovery. Cold Spring Harb Symp Quant Biol 71: 239-249.
    • (2006) Cold Spring Harb Symp Quant Biol , vol.71 , pp. 239-249
    • Irnov, K.A.1    Winkler, W.C.2
  • 52
  • 53
    • 63749126957 scopus 로고    scopus 로고
    • Expanding roles for metabolite-sensing regulatory RNAs
    • Dambach MD, Winkler WC, (2009) Expanding roles for metabolite-sensing regulatory RNAs. Curr Opin Microbiol 12: 161-169.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 161-169
    • Dambach, M.D.1    Winkler, W.C.2
  • 54
    • 44949214942 scopus 로고    scopus 로고
    • Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors
    • Turnbough CL, Switzer RL, (2008) Regulation of pyrimidine biosynthetic gene expression in bacteria: repression without repressors. Microbiol and Mol Biol Rev 72: 266-300.
    • (2008) Microbiol and Mol Biol Rev , vol.72 , pp. 266-300
    • Turnbough, C.L.1    Switzer, R.L.2
  • 55
    • 34547829267 scopus 로고    scopus 로고
    • In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA
    • Heidrich N, Moll I, Brantl S, (2007) In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA. Nucleic Acids Res 35: 4331-4346.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4331-4346
    • Heidrich, N.1    Moll, I.2    Brantl, S.3
  • 56
    • 77957832370 scopus 로고    scopus 로고
    • Small genes under sporulation control in the Bacillus subtilis genome
    • Schmalisch M, Maiques E, Nikolov L, Camp AH, Chevreux B, et al. (2010) Small genes under sporulation control in the Bacillus subtilis genome. J Bacteriol 192: 5402-5412.
    • (2010) J Bacteriol , vol.192 , pp. 5402-5412
    • Schmalisch, M.1    Maiques, E.2    Nikolov, L.3    Camp, A.H.4    Chevreux, B.5
  • 57
    • 57349189421 scopus 로고    scopus 로고
    • Small toxic proteins and the anti-sense RNAs that repress them
    • Fozo EM, Hemm MR, Storz G, (2008) Small toxic proteins and the anti-sense RNAs that repress them. Microbiol Mol Biol Rev 72: 579-589.
    • (2008) Microbiol Mol Biol Rev , vol.72 , pp. 579-589
    • Fozo, E.M.1    Hemm, M.R.2    Storz, G.3
  • 58
    • 84856043718 scopus 로고    scopus 로고
    • BsrG/SR4 from Bacillus subtilis - the first temperature-dependent type I toxin-antitoxin system
    • Jahn N, Preis H, Wiedemann C, Brantl S, (2012) BsrG/SR4 from Bacillus subtilis - the first temperature-dependent type I toxin-antitoxin system. Mol Microbiol 83: 579-598.
    • (2012) Mol Microbiol , vol.83 , pp. 579-598
    • Jahn, N.1    Preis, H.2    Wiedemann, C.3    Brantl, S.4
  • 59
  • 60
    • 67349278437 scopus 로고    scopus 로고
    • Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes
    • Sittka A, Sharma CM, Rolle K, Vogel J, (2009) Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes. RNA Biol 6: 266-275.
    • (2009) RNA Biol , vol.6 , pp. 266-275
    • Sittka, A.1    Sharma, C.M.2    Rolle, K.3    Vogel, J.4
  • 61
    • 2342511433 scopus 로고    scopus 로고
    • New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
    • Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, et al. (2004) New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc Natl Acad Sci USA 101: 6421-6426.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 6421-6426
    • Barrick, J.E.1    Corbino, K.A.2    Winkler, W.C.3    Nahvi, A.4    Mandal, M.5
  • 62
    • 79956068747 scopus 로고    scopus 로고
    • CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers
    • Marchais A, Duperrier S, Durand S, Gautheret D, Stragier P, (2011) CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers. RNA Biol 8: 358-364.
    • (2011) RNA Biol , vol.8 , pp. 358-364
    • Marchais, A.1    Duperrier, S.2    Durand, S.3    Gautheret, D.4    Stragier, P.5
  • 63
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 65
    • 0037050261 scopus 로고    scopus 로고
    • Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions
    • Jarmer H, Berka R, Knudsen S, Saxild HH, (2002) Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions. FEMS Microbiol Lett 206: 197-200.
    • (2002) FEMS Microbiol Lett , vol.206 , pp. 197-200
    • Jarmer, H.1    Berka, R.2    Knudsen, S.3    Saxild, H.H.4
  • 66
    • 8744309111 scopus 로고    scopus 로고
    • New vector for efficient allelic replacement in naturally transformable, low GC-content bacteria
    • Arnaud M, Chastanet A, Débarbouillé M, (2004) New vector for efficient allelic replacement in naturally transformable, low GC-content bacteria. Appl Environ Microbiol 70: 6887-6891.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6887-6891
    • Arnaud, M.1    Chastanet, A.2    Débarbouillé, M.3
  • 68
    • 0038210214 scopus 로고    scopus 로고
    • Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
    • Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR, (2004) Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 113: 577-586.
    • (2004) Cell , vol.113 , pp. 577-586
    • Mandal, M.1    Boese, B.2    Barrick, J.E.3    Winkler, W.C.4    Breaker, R.R.5
  • 69
    • 85011941301 scopus 로고    scopus 로고
    • Magnesium-sensing riboswitches in bacteria
    • Ramesh A, Winkler WC, (2010) Magnesium-sensing riboswitches in bacteria. RNA Biol 7: 77-83.
    • (2010) RNA Biol , vol.7 , pp. 77-83
    • Ramesh, A.1    Winkler, W.C.2
  • 70
    • 79952444960 scopus 로고    scopus 로고
    • Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes
    • Ramesh A, Wakeman CA, Winkler WC, (2011) Insights into metalloregulation by M-box riboswitch RNAs via structural analysis of manganese-bound complexes. J Mol Biol 407: 556-570.
    • (2011) J Mol Biol , vol.407 , pp. 556-570
    • Ramesh, A.1    Wakeman, C.A.2    Winkler, W.C.3
  • 72
    • 65649154643 scopus 로고    scopus 로고
    • Predicting riboswitch regulation on a genomic scale
    • Barrick JE, (2009) Predicting riboswitch regulation on a genomic scale. Methods Mol Biol 540: 1-13.
    • (2009) Methods Mol Biol , vol.540 , pp. 1-13
    • Barrick, J.E.1
  • 73
    • 56949094523 scopus 로고    scopus 로고
    • Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis
    • Saito S, Kakeshita H, Nakamura K, (2009) Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis. Gene 428: 2-8.
    • (2009) Gene , vol.428 , pp. 2-8
    • Saito, S.1    Kakeshita, H.2    Nakamura, K.3
  • 74
    • 0026077516 scopus 로고
    • Transcription initiation region of the srfA operon, which is controlled by the comP-comA signal transduction system in Bacillus subtilis
    • Nakano NM, Xia LA, Zuber P, (1991) Transcription initiation region of the srfA operon, which is controlled by the comP-comA signal transduction system in Bacillus subtilis. J Bacteriol 173: 5487-5493.
    • (1991) J Bacteriol , vol.173 , pp. 5487-5493
    • Nakano, N.M.1    Xia, L.A.2    Zuber, P.3
  • 75
    • 0023193674 scopus 로고
    • Identification of the promoter of the Bacillus subtilis sdh operon
    • Melin L, Magnusson K, Rutberg L, (1987) Identification of the promoter of the Bacillus subtilis sdh operon. J Bacteriol 169: 3232-3236.
    • (1987) J Bacteriol , vol.169 , pp. 3232-3236
    • Melin, L.1    Magnusson, K.2    Rutberg, L.3
  • 76
    • 0026581054 scopus 로고
    • Cloning and sequence of Bacillus subtilis purA and guaA, involved in the conversion of IMP to AMP and GMP
    • Mäntsälä P, Zalkin H (1992) Cloning and sequence of Bacillus subtilis purA and guaA, involved in the conversion of IMP to AMP and GMP. J Bacteriol 174:1 883-1890.
    • (1992) J Bacteriol , vol.174 , Issue.1 , pp. 883-1890
    • Mäntsälä, P.1    Zalkin, H.2


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