-
2
-
-
30044435097
-
Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression
-
Deng W., Zhu X., Skogerbo G., Zhao Y., Fu Z., Wang Y., He H., Cai L., Sun H., Liu C., et al. 2006. Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression. Genome Res. 16: 20.
-
(2006)
Genome Res
, vol.16
, pp. 20
-
-
Deng, W.1
Zhu, X.2
Skogerbo, G.3
Zhao, Y.4
Fu, Z.5
Wang, Y.6
He, H.7
Cai, L.8
Sun, H.9
Liu, C.10
-
3
-
-
0017380076
-
Mapping adenines, guanines, and pyrimidines in RNA
-
Donis-Keller H., Maxam A.M., and Gilbert W. 1977. Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 4: 2527.
-
(1977)
Nucleic Acids Res
, vol.4
, pp. 2527
-
-
Donis-Keller, H.1
Maxam, A.M.2
Gilbert, W.3
-
4
-
-
25844493154
-
RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction
-
Dubey A.K., Baker C.S., Romeo T., and Babitzke P. 2005. RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction. RNA 11: 1579.
-
(2005)
RNA
, vol.11
, pp. 1579
-
-
Dubey, A.K.1
Baker, C.S.2
Romeo, T.3
Babitzke, P.4
-
5
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy S.R. 2001. Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2: 919.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 919
-
-
Eddy, S.R.1
-
6
-
-
0037133945
-
Computational genomics of noncoding RNA genes
-
- . 2002. Computational genomics of noncoding RNA genes. Cell 109: 137.
-
(2002)
Cell
, vol.109
, pp. 137
-
-
Eddy, S.R.1
-
7
-
-
0017667470
-
Recent progress in the determination of the primary sequence of the 16 S RNA of Escherichia coli
-
Ehresmann C., Stiegler P., Carbon P., and Ebel J.P. 1977. Recent progress in the determination of the primary sequence of the 16 S RNA of Escherichia coli. FEBS Lett. 84: 337.
-
(1977)
FEBS Lett
, vol.84
, pp. 337
-
-
Ehresmann, C.1
Stiegler, P.2
Carbon, P.3
Ebel, J.P.4
-
8
-
-
0034687730
-
Imprinted expression of small nucleolar RNAs in brain: Time for RNomics
-
Filipowicz W. 2000. Imprinted expression of small nucleolar RNAs in brain: Time for RNomics. Proc. Natl. Acad. Sci. 97: 14035.
-
(2000)
Proc. Natl. Acad. Sci
, vol.97
, pp. 14035
-
-
Filipowicz, W.1
-
9
-
-
0030471309
-
It's the genes! EST access to human genome content
-
Gerhold D. and Caskey C.T. 1996. It's the genes! EST access to human genome content. Bioessays 18: 973.
-
(1996)
Bioessays
, vol.18
, pp. 973
-
-
Gerhold, D.1
Caskey, C.T.2
-
10
-
-
13844266603
-
The signal recognition particle and its interactions during protein targeting
-
Halic M. and Beckmann R. 2005. The signal recognition particle and its interactions during protein targeting. Curr. Opin. Struct. Biol. 15: 116.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 116
-
-
Halic, M.1
Beckmann, R.2
-
11
-
-
1542319100
-
Structure of the signal recognition particle interacting with the elongation-arrested ribosome
-
Halic M., Becker T., Pool M.R., Spahn C.M., Grassucci R.A., Frank J., and Beckmann R. 2004. Structure of the signal recognition particle interacting with the elongation-arrested ribosome. Nature 427: 808.
-
(2004)
Nature
, vol.427
, pp. 808
-
-
Halic, M.1
Becker, T.2
Pool, M.R.3
Spahn, C.M.4
Grassucci, R.A.5
Frank, J.6
Beckmann, R.7
-
13
-
-
3142770849
-
Experimental RNomics: A global approach to identifying small nuclear RNAs and their targets in different model organisms
-
Hüttenhofer A., Cavaille J., and Bachellerie J.P. 2004. Experimental RNomics: A global approach to identifying small nuclear RNAs and their targets in different model organisms. Methods Mol. Biol. 265: 409.
-
(2004)
Methods Mol. Biol
, vol.265
, pp. 409
-
-
Hüttenhofer, A.1
Cavaille, J.2
Bachellerie, J.P.3
-
14
-
-
0035355205
-
RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
-
Hüttenhofer A., Kiefmann M., Meier-Ewert S., O'Brien J., Lehrach H., Bachellerie J.-P., and Brosius J. 2001. RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 20: 2943.
-
(2001)
EMBO J
, vol.20
, pp. 2943
-
-
Hüttenhofer, A.1
Kiefmann, M.2
Meier-Ewert, S.3
O'Brien, J.4
Lehrach, H.5
Bachellerie, J.-P.6
Brosius, J.7
-
15
-
-
4544242851
-
Induction of DNA methylation and gene silencing by short interfering RNAs in human cells
-
Kawasaki H. and Taira K. 2004. Induction of DNA methylation and gene silencing by short interfering RNAs in human cells. Nature 431: 211.
-
(2004)
Nature
, vol.431
, pp. 211
-
-
Kawasaki, H.1
Taira, K.2
-
16
-
-
0037388262
-
Specific SR protein-dependent splicing substrates identified through genomic SELEX
-
Kim S., Shi H., Lee D.K., and Lis J.T. 2003. Specific SR protein-dependent splicing substrates identified through genomic SELEX. Nucleic Acids Res. 31: 1955.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1955
-
-
Kim, S.1
Shi, H.2
Lee, D.K.3
Lis, J.T.4
-
17
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee R.C., Feinbaum R.L., and Ambros V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843.
-
(1993)
Cell
, vol.75
, pp. 843
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
18
-
-
4444368187
-
Argonaute2 is the catalytic engine of mammalian RNAi
-
Liu J., Carmell M.A., Rivas F.V., Marsden C.G., Thomson J.M., Song J.J., Hammond S.M., Joshua-Tor L., and Hannon G.J. 2004. Argonaute2 is the catalytic engine of mammalian RNAi. Science 305: 1437.
-
(2004)
Science
, vol.305
, pp. 1437
-
-
Liu, J.1
Carmell, M.A.2
Rivas, F.V.3
Marsden, C.G.4
Thomson, J.M.5
Song, J.J.6
Hammond, S.M.7
Joshua-Tor, L.8
Hannon, G.J.9
-
19
-
-
0242354129
-
The origin of new genes: Glimpses from the young and old
-
Long M., Betran E., Thornton K., and Wang W. 2003. The origin of new genes: Glimpses from the young and old. Nat. Rev. Genet. 4: 865.
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 865
-
-
Long, M.1
Betran, E.2
Thornton, K.3
Wang, W.4
-
20
-
-
0035100582
-
Regulation of RpoS by a novel small RNA: The characterization of RprA
-
Majdalani N., Chen S., Murrow J., St. John K., and Gottesman S. 2001. Regulation of RpoS by a novel small RNA: The characterization of RprA. Mol. Microbiol. 39: 1382.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 1382
-
-
Majdalani, N.1
Chen, S.2
Murrow, J.3
St. John, K.4
Gottesman, S.5
-
21
-
-
0031915525
-
Tailing and 3′-end labeling of RNA with yeast poly(A) polymerase and various nucleotides
-
Martin G. and Keller W. 1998. Tailing and 3′-end labeling of RNA with yeast poly(A) polymerase and various nucleotides. RNA 4: 226.
-
(1998)
RNA
, vol.4
, pp. 226
-
-
Martin, G.1
Keller, W.2
-
22
-
-
0035195942
-
Non-coding RNAs: The architects of eukaryotic complexity
-
986
-
Mattick J.S. 2001. Non-coding RNAs: The architects of eukaryotic complexity. EMBO Rep. 2: 986.
-
(2001)
EMBO Rep
, vol.2
-
-
Mattick, J.S.1
-
23
-
-
1842584883
-
RNA regulation: A new genetics?
-
- . 2004. RNA regulation: A new genetics? Nat. Rev. Genet. 5: 316.
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 316
-
-
Mattick, J.S.1
-
24
-
-
24644443227
-
The functional genomics of noncoding RNA
-
- . 2005. The functional genomics of noncoding RNA. Science 309: 1527.
-
(2005)
Science
, vol.309
, pp. 1527
-
-
Mattick, J.S.1
-
25
-
-
15944402920
-
Small regulatory RNAs in mammals
-
spec
-
Mattick J.S. and Makunin I.V. 2005. Small regulatory RNAs in mammals. Hum. Mol. Genet. (spec. no. 1) 14: R121.
-
(2005)
Hum. Mol. Genet
, vol.14
, Issue.1
-
-
Mattick, J.S.1
Makunin, I.V.2
-
26
-
-
10644237968
-
RNAi-mediated pathways in the nucleus
-
Matzke M.A. and Birchler J.A. 2005. RNAi-mediated pathways in the nucleus. Nat. Rev. Genet. 6: 24.
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 24
-
-
Matzke, M.A.1
Birchler, J.A.2
-
27
-
-
4644223259
-
Mechanisms of gene silencing by double-stranded RNA
-
Meister G. and Tuschl T. 2004. Mechanisms of gene silencing by double-stranded RNA. Nature 431: 343.
-
(2004)
Nature
, vol.431
, pp. 343
-
-
Meister, G.1
Tuschl, T.2
-
28
-
-
85015766937
-
A unique mechanism regulating gene expression: Translational inhibition by a complementary RNA transcript (micRNA)
-
Mizuno T., Chou M.Y., and Inouye M. 1983. A unique mechanism regulating gene expression: Translational inhibition by a complementary RNA transcript (micRNA). Proc. Jpn. Acad. Ser. B Phys. Biol. Sci. 59: 335.
-
(1983)
Proc. Jpn. Acad. Ser. B Phys. Biol. Sci
, vol.59
, pp. 335
-
-
Mizuno, T.1
Chou, M.Y.2
Inouye, M.3
-
29
-
-
1942535718
-
Small RNAs in genome rearrangement in Tetrahymena
-
Mochizuki K. and Gorovsky M.A. 2004. Small RNAs in genome rearrangement in Tetrahymena. Curr. Opin. Genet. Dev. 14: 181.
-
(2004)
Curr. Opin. Genet. Dev
, vol.14
, pp. 181
-
-
Mochizuki, K.1
Gorovsky, M.A.2
-
30
-
-
0034068685
-
Unraveling plant metabolism by EST analysis
-
Ohlrogge J. and Benning C. 2000. Unraveling plant metabolism by EST analysis. Curr. Opin. Plant Biol. 3: 224.
-
(2000)
Curr. Opin. Plant Biol
, vol.3
, pp. 224
-
-
Ohlrogge, J.1
Benning, C.2
-
31
-
-
25844530287
-
Long-range DNase I hypersensitivity mapping reveals the imprinted Igf2r and Air promoters share cis-regulatory elements
-
Pauler F.M., Stricker S.H., Warczok K.E., and Barlow D.P. 2005. Long-range DNase I hypersensitivity mapping reveals the imprinted Igf2r and Air promoters share cis-regulatory elements. Genome Res. 15: 1379.
-
(2005)
Genome Res
, vol.15
, pp. 1379
-
-
Pauler, F.M.1
Stricker, S.H.2
Warczok, K.E.3
Barlow, D.P.4
-
32
-
-
0018459544
-
Direct chemical method for sequencing RNA
-
Peattie D.A. 1979. Direct chemical method for sequencing RNA. Proc. Natl. Acad. Sci. 76: 1760.
-
(1979)
Proc. Natl. Acad. Sci
, vol.76
, pp. 1760
-
-
Peattie, D.A.1
-
33
-
-
85010251988
-
A two-dimensional fractionation procedure for radioactive nucleotides
-
Sanger F., Brownlee G.G., and Barrell B.G. 1965. A two-dimensional fractionation procedure for radioactive nucleotides. J. Mol. Biol. 13: 373.
-
(1965)
J. Mol. Biol
, vol.13
, pp. 373
-
-
Sanger, F.1
Brownlee, G.G.2
Barrell, B.G.3
-
34
-
-
0034320425
-
Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: Genomic SELEX
-
Shtatland T., Gill S.C., Javornik B.E., Johansson H.E., Singer B.S., Uhlenbeck O.C., Zichi D.A., and Gold L. 2000. Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: Genomic SELEX. Nucleic Acids Res. 28: E93.
-
(2000)
Nucleic Acids Res
, vol.28
-
-
Shtatland, T.1
Gill, S.C.2
Javornik, B.E.3
Johansson, H.E.4
Singer, B.S.5
Uhlenbeck, O.C.6
Zichi, D.A.7
Gold, L.8
-
36
-
-
0028957883
-
A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli
-
Sledjeski D. and Gottesman S. 1995. A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli. Proc. Natl. Acad. Sci. 92: 2003.
-
(1995)
Proc. Natl. Acad. Sci
, vol.92
-
-
Sledjeski, D.1
Gottesman, S.2
-
37
-
-
22244458625
-
Applications of DNA microarrays in biology
-
Stoughton R.B. 2005. Applications of DNA microarrays in biology. Annu. Rev. Biochem. 74: 53.
-
(2005)
Annu. Rev. Biochem
, vol.74
, pp. 53
-
-
Stoughton, R.B.1
-
39
-
-
14644393684
-
Perspective: Machines for RNAi
-
Tomari Y. and Zamore P.D. 2005. Perspective: Machines for RNAi. Genes Dev. 19: 517.
-
(2005)
Genes Dev
, vol.19
, pp. 517
-
-
Tomari, Y.1
Zamore, P.D.2
-
40
-
-
29044443534
-
How to find small non-coding RNAs in bacteria
-
Vogel J. and Sharma C.S. 2005. How to find small non-coding RNAs in bacteria. Biol. Chem. 386: 1219.
-
(2005)
Biol. Chem
, vol.386
, pp. 1219
-
-
Vogel, J.1
Sharma, C.S.2
-
41
-
-
0037072661
-
Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
-
Volpe T.A., Kidner C., Hall I.M., Teng G., Grewal S.I., and Martienssen R.A. 2002. Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297: 1833.
-
(2002)
Science
, vol.297
, pp. 1833
-
-
Volpe, T.A.1
Kidner, C.2
Hall, I.M.3
Teng, G.4
Grewal, S.I.5
Martienssen, R.A.6
-
42
-
-
27944464131
-
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
-
Washietl S., Hofacker I.L., Lukasser M., Hüttenhofer A., and Stadler P.F. 2005. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Nat. Biotechnol. 23: 1383.
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 1383
-
-
Washietl, S.1
Hofacker, I.L.2
Lukasser, M.3
Hüttenhofer, A.4
Stadler, P.F.5
-
43
-
-
0034625237
-
6S RNA regulates E. coli RNA polymerase activity
-
Wassarman K.M. and Storz G. 2000. 6S RNA regulates E. coli RNA polymerase activity. Cell 101: 613.
-
(2000)
Cell
, vol.101
, pp. 613
-
-
Wassarman, K.M.1
Storz, G.2
-
44
-
-
0035891271
-
The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription
-
Yang Z., Zhu Q., Luo K., and Zhou Q. 2001. The 7SK small nuclear RNA inhibits the CDK9/cyclin T1 kinase to control transcription. Nature 414: 317.
-
(2001)
Nature
, vol.414
, pp. 317
-
-
Yang, Z.1
Zhu, Q.2
Luo, K.3
Zhou, Q.4
|