-
1
-
-
0034625235
-
The impact of comparative genomics on our understanding of evolution
-
Koonin EV, Aravind L, Kondrashov AS: The impact of comparative genomics on our understanding of evolution. Cell 2000, 101:573-576.
-
(2000)
Cell
, vol.101
, pp. 573-576
-
-
Koonin, E.V.1
Aravind, L.2
Kondrashov, A.S.3
-
3
-
-
0035575588
-
Small-molecule metabolism: An enzyme mosaic
-
Teichmann SA, Rison SC, Thornton JM, Riley M, Gough J, Chothia C: Small-molecule metabolism: an enzyme mosaic. Trends Biotechnol 2001, 19:482-486.
-
(2001)
Trends Biotechnol
, vol.19
, pp. 482-486
-
-
Teichmann, S.A.1
Rison, S.C.2
Thornton, J.M.3
Riley, M.4
Gough, J.5
Chothia, C.6
-
4
-
-
26844454995
-
Domain rearrangements in protein evolution
-
Bjorklund AK, Ekman D, Light S, Frey-Skott J, Elofsson A: Domain rearrangements in protein evolution. J Mol Biol 2005, 353:911-923.
-
(2005)
J Mol Biol
, vol.353
, pp. 911-923
-
-
Bjorklund, A.K.1
Ekman, D.2
Light, S.3
Frey-Skott, J.4
Elofsson, A.5
-
5
-
-
1842861592
-
Structure, function and evolution of multidomain proteins
-
Vogel C, Bashton M, Kerrison ND, Chothia C, Teichmann SA: Structure, function and evolution of multidomain proteins. Curr Opin Struct Biol 2004, 14:208-216.
-
(2004)
Curr Opin Struct Biol
, vol.14
, pp. 208-216
-
-
Vogel, C.1
Bashton, M.2
Kerrison, N.D.3
Chothia, C.4
Teichmann, S.A.5
-
6
-
-
0036180314
-
Rosetta Stone proteins: Chance and necessity?
-
Veitia RA: Rosetta Stone proteins: chance and necessity? Genome Biol 2002, 3:1-3.
-
(2002)
Genome Biol
, vol.3
, pp. 1-3
-
-
Veitia, R.A.1
-
7
-
-
0034887573
-
Scale-free behavior in protein domain networks
-
Wuchty S: Scale-free behavior in protein domain networks. Mol Biol Evol 2001, 18:1694-1702.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1694-1702
-
-
Wuchty, S.1
-
8
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
Apic G, Gough J, Teichmann SA: Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J Mol Biol 2001, 310:311-325.
-
(2001)
J Mol Biol
, vol.310
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
9
-
-
12344261833
-
The relationship between domain duplication and recombination
-
Vogel C, Teichmann SA, Pereira-Leal J: The relationship between domain duplication and recombination. J Mol Biol 2005, 346:355-365.
-
(2005)
J Mol Biol
, vol.346
, pp. 355-365
-
-
Vogel, C.1
Teichmann, S.A.2
Pereira-Leal, J.3
-
10
-
-
26244442102
-
Modules, multidomain proteins and organismic complexity
-
Tordai H, Nagy A, Farkas K, Bányai L, Patthy L: Modules, multidomain proteins and organismic complexity. FEBS J 2005, 272:5064-5078.
-
(2005)
FEBS J
, vol.272
, pp. 5064-5078
-
-
Tordai, H.1
Nagy, A.2
Farkas, K.3
Bányai, L.4
Patthy, L.5
-
11
-
-
33745611416
-
Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins
-
Pasek S, Risler JL, Brezellec P: Gene fusion/fission is a major contributor to evolution of multi-domain bacterial proteins. Bioinformatics 2006, 22:1418-1423.
-
(2006)
Bioinformatics
, vol.22
, pp. 1418-1423
-
-
Pasek, S.1
Risler, J.L.2
Brezellec, P.3
-
12
-
-
33646268799
-
Domain deletions and substitutions in the modular protein evolution
-
Weiner J 3rd, Beaussart F, Bornberg-Bauer E: Domain deletions and substitutions in the modular protein evolution. FEBS J 2006, 273:2037-2047.
-
(2006)
FEBS J
, vol.273
, pp. 2037-2047
-
-
Weiner III, J.1
Beaussart, F.2
Bornberg-Bauer, E.3
-
13
-
-
33644907773
-
Evolution of circular permutations in multidomain proteins
-
Weiner J 3rd, Bornberg-Bauer E: Evolution of circular permutations in multidomain proteins. Mol Biol Evol 2006, 23:734-743.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 734-743
-
-
Weiner III, J.1
Bornberg-Bauer, E.2
-
14
-
-
16244423379
-
Multi-domain proteins in the three kingdoms of life: Orphan domains and other unassigned regions
-
Ekman D, Bjorklund AK, Frey-Skott J, Elofsson A: Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions. J Mol Biol 2005, 348:231-243.
-
(2005)
J Mol Biol
, vol.348
, pp. 231-243
-
-
Ekman, D.1
Bjorklund, A.K.2
Frey-Skott, J.3
Elofsson, A.4
-
15
-
-
4444242626
-
cis-Regulatory and protein evolution in orthologous and duplicate genes
-
Castillo-Davis CI, Hartl DL, Achaz G: cis-Regulatory and protein evolution in orthologous and duplicate genes. Genome Res 2004, 14:1530-1536.
-
(2004)
Genome Res
, vol.14
, pp. 1530-1536
-
-
Castillo-Davis, C.I.1
Hartl, D.L.2
Achaz, G.3
-
16
-
-
25444525409
-
Comparative mapping of sequence-based and structure-based protein domains
-
Zhang Y, Chandonia JM, Ding C, Holbrook SR: Comparative mapping of sequence-based and structure-based protein domains. BMC Bioinformatics 2005, 6:77.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 77
-
-
Zhang, Y.1
Chandonia, J.M.2
Ding, C.3
Holbrook, S.R.4
-
17
-
-
0028961335
-
SCOP: A structural classification of protein database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C: SCOP: a structural classification of protein database for the investigation of sequences and structures. J Mol Biol 1995, 247:536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
18
-
-
13444272079
-
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis
-
Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, et al.: The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Res 2005, 33:D247-D251.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pearl, F.1
Todd, A.2
Sillitoe, I.3
Dibley, M.4
Redfern, O.5
Lewis, T.6
Bennett, C.7
Marsden, R.8
Grant, A.9
Lee, D.10
-
19
-
-
0027991446
-
The FSSP database of structurally aligned protein fold families
-
Holm L, Sander C: The FSSP database of structurally aligned protein fold families. Nucleic Acids Res 1994, 22:3600-3609.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 3600-3609
-
-
Holm, L.1
Sander, C.2
-
20
-
-
9144257886
-
The Pfam protein families database
-
Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR: The Pfam protein families database. Nucleic Acids Res 2004, 32:D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
21
-
-
0000120520
-
ProDom: Automated clustering of homologous domains
-
Servant F, Bru C, Carrere S, Courcelle E, Gouzy J, Peyruc D, Kahn D: ProDom: automated clustering of homologous domains. Brief Bioinform 2002, 3:246-251.
-
(2002)
Brief Bioinform
, vol.3
, pp. 246-251
-
-
Servant, F.1
Bru, C.2
Carrere, S.3
Courcelle, E.4
Gouzy, J.5
Peyruc, D.6
Kahn, D.7
-
22
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz J, Milpetz F, Bork P, Ponting CP: SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci U S A 1998, 95:5857-5864.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 5857-5864
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
23
-
-
0036853192
-
Structural characterization of the human proteome
-
Muller A, MacCallum RM, Sternberg MJ: Structural characterization of the human proteome. Genome Res 2002, 12:1625-1641.
-
(2002)
Genome Res
, vol.12
, pp. 1625-1641
-
-
Muller, A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
24
-
-
22244450719
-
Protein families and their evolutiona structural perspective
-
Orengo CA, Thornton JM: Protein families and their evolutiona structural perspective. Annu Rev Biochem 2005, 74:867-900.
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 867-900
-
-
Orengo, C.A.1
Thornton, J.M.2
-
25
-
-
0037138386
-
Protein domain analysis in the era of complete genomes
-
Copley RR, Doerks T, Letunic I, Bork P: Protein domain analysis in the era of complete genomes. FEBS Lett 2002, 513:129-134.
-
(2002)
FEBS Lett
, vol.513
, pp. 129-134
-
-
Copley, R.R.1
Doerks, T.2
Letunic, I.3
Bork, P.4
-
26
-
-
0028290005
-
Parser for protein folding units
-
Holm L, Sander C: Parser for protein folding units. Proteins 1994, 19:256-268.
-
(1994)
Proteins
, vol.19
, pp. 256-268
-
-
Holm, L.1
Sander, C.2
-
27
-
-
0032804892
-
Origin of multicellular eukaryotes - Insights from proteome comparisons
-
Aravind L, Subramanian G: Origin of multicellular eukaryotes - insights from proteome comparisons. Curr Opin Genet Dev 1999, 9:688-694.
-
(1999)
Curr Opin Genet Dev
, vol.9
, pp. 688-694
-
-
Aravind, L.1
Subramanian, G.2
-
28
-
-
0033150836
-
Protein families in multicellular organisms
-
Copley RR, Schultz J, Ponting CP, Bork P: Protein families in multicellular organisms. Curr Opin Struct Biol 1999, 9:408-415.
-
(1999)
Curr Opin Struct Biol
, vol.9
, pp. 408-415
-
-
Copley, R.R.1
Schultz, J.2
Ponting, C.P.3
Bork, P.4
-
29
-
-
33646348740
-
Exploiting protein structure data to explore the evolution of protein function and biological complexity
-
Marsden RL, Ranea JA, Sillero A, Redfern O, Yeats C, Maibaum M, Lee D, Addou S, Reeves GA, Dallman TJ, Orengo CA: Exploiting protein structure data to explore the evolution of protein function and biological complexity. Philos Trans R Soc Lond B Biol Sci 2006, 361:425-440.
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 425-440
-
-
Marsden, R.L.1
Ranea, J.A.2
Sillero, A.3
Redfern, O.4
Yeats, C.5
Maibaum, M.6
Lee, D.7
Addou, S.8
Reeves, G.A.9
Dallman, T.J.10
Orengo, C.A.11
-
30
-
-
23144452044
-
The HHpred interactive server for protein homology detection and structure prediction
-
Söding J, Biegert A, Lupas AN: The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 2005, 33:W244-W248.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Söding, J.1
Biegert, A.2
Lupas, A.N.3
-
31
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR: Profile hidden Markov models. Bioinformatics 1998, 14:755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
32
-
-
0037460953
-
DomCut: Prediction of inter-domain linker regions in amino acid sequences
-
Suyama M, Ohara O: DomCut: prediction of inter-domain linker regions in amino acid sequences. Bioinformatics 2003, 19:673-674.
-
(2003)
Bioinformatics
, vol.19
, pp. 673-674
-
-
Suyama, M.1
Ohara, O.2
-
33
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A: Pfam: clans, web tools and services. Nucleic Acids Res 2006, 34:D247-251.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
34
-
-
4844230621
-
The Frizzled family: Receptors for multiple signal transduction pathways
-
Huang HC, Klein PS: The Frizzled family: receptors for multiple signal transduction pathways. Genome Biol 2004, 5:234.
-
(2004)
Genome Biol
, vol.5
, pp. 234
-
-
Huang, H.C.1
Klein, P.S.2
-
35
-
-
0037076432
-
BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma
-
Loukinov DI, Pugacheva E, Vatolin S, Pack SD, Moon H, Chernukhin I, Mannan P, Larsson E, Kanduri C, Vostrov AA, et al.: BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma. Proc Natl Acad Sci U S A 2002, 99:6806-6811.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 6806-6811
-
-
Loukinov, D.I.1
Pugacheva, E.2
Vatolin, S.3
Pack, S.D.4
Moon, H.5
Chernukhin, I.6
Mannan, P.7
Larsson, E.8
Kanduri, C.9
Vostrov, A.A.10
-
36
-
-
12144289308
-
Characterization of two novel KRAB-domain-containing zinc finger genes, ZNF460 and ZNF461, on human chromosome 19q13.1. q13.4
-
Dai J, Li Y, Ji C, Jin F, Zheng Z, Wang X, Sun X, Xu X, Gu S, Xie Y, Mao Y: Characterization of two novel KRAB-domain-containing zinc finger genes, ZNF460 and ZNF461, on human chromosome 19q13.1 . q13.4. Cytogenet Genome Res 2003, 103:74-78.
-
(2003)
Cytogenet Genome Res
, vol.103
, pp. 74-78
-
-
Dai, J.1
Li, Y.2
Ji, C.3
Jin, F.4
Zheng, Z.5
Wang, X.6
Sun, X.7
Xu, X.8
Gu, S.9
Xie, Y.10
Mao, Y.11
-
37
-
-
0024042080
-
Structure and complete nucleotide sequence of the Marek's disease herpesvirus gp57-65 gene
-
Coussens PM, Velicer LF: Structure and complete nucleotide sequence of the Marek's disease herpesvirus gp57-65 gene. J Virol 1988, 62:2373-2379.
-
(1988)
J Virol
, vol.62
, pp. 2373-2379
-
-
Coussens, P.M.1
Velicer, L.F.2
-
38
-
-
0025881195
-
Structure of the 55-kDa regulatory subunit of protein phosphatase 2A: Evidence for a neuronal-specific isoform
-
Mayer RE, Hendrix P, Cron P, Matthies R, Stone SR, Goris J, Merlevede W, Hofsteenge J, Hemmings BA: Structure of the 55-kDa regulatory subunit of protein phosphatase 2A: evidence for a neuronal-specific isoform. Biochemistry 1991, 30:3589-3597.
-
(1991)
Biochemistry
, vol.30
, pp. 3589-3597
-
-
Mayer, R.E.1
Hendrix, P.2
Cron, P.3
Matthies, R.4
Stone, S.R.5
Goris, J.6
Merlevede, W.7
Hofsteenge, J.8
Hemmings, B.A.9
-
39
-
-
0033763096
-
Mutant WD-repeat protein in triple-A syndrome
-
Tullio-Pelet A, Salomon R, Hadj-Rabia S, Mugnier C, de Laet MH, Chaouachi B, Bakiri F, Brottier P, Cattolico L, Penet C, et al.: Mutant WD-repeat protein in triple-A syndrome. Nat Genet 2000, 26:332-335.
-
(2000)
Nat Genet
, vol.26
, pp. 332-335
-
-
Tullio-Pelet, A.1
Salomon, R.2
Hadj-Rabia, S.3
Mugnier, C.4
De Laet, M.H.5
Chaouachi, B.6
Bakiri, F.7
Brottier, P.8
Cattolico, L.9
Penet, C.10
-
40
-
-
0033961690
-
The kelch repeat superfamily of proteins: Propellers of cell function
-
Adams J, Kelso R, Cooley L: The kelch repeat superfamily of proteins: propellers of cell function. Trends Cell Biol 2000, 10:17-24.
-
(2000)
Trends Cell Biol
, vol.10
, pp. 17-24
-
-
Adams, J.1
Kelso, R.2
Cooley, L.3
-
41
-
-
0031970010
-
The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold
-
Aravind L, Galperin MY, Koonin EV: The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold. Trends Biochem Sci 1998, 23:127-129.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 127-129
-
-
Aravind, L.1
Galperin, M.Y.2
Koonin, E.V.3
-
42
-
-
33644509247
-
A general model of G protein-coupled receptor sequences and its application to detect remote homologs
-
Wistrand M, Kall L, Sonnhammer EL: A general model of G protein-coupled receptor sequences and its application to detect remote homologs. Protein Sci 2006, 15:509-521.
-
(2006)
Protein Sci
, vol.15
, pp. 509-521
-
-
Wistrand, M.1
Kall, L.2
Sonnhammer, E.L.3
-
43
-
-
0028382242
-
The NMR structure of the inhibited catalytic domain of human stromelysin-1
-
Gooley PR, O'Connell JF, Marcy AI, Cuca GC, Salowe SP, Bush BL, Hermes JD, Esser CK, Hagmann WK, Springer JP, et al.: The NMR structure of the inhibited catalytic domain of human stromelysin-1. Nat Struct Biol 1994, 1:111-118.
-
(1994)
Nat Struct Biol
, vol.1
, pp. 111-118
-
-
Gooley, P.R.1
O'Connell, J.F.2
Marcy, A.I.3
Cuca, G.C.4
Salowe, S.P.5
Bush, B.L.6
Hermes, J.D.7
Esser, C.K.8
Hagmann, W.K.9
Springer, J.P.10
-
44
-
-
0031656460
-
Matrix metalloproteinases: Structures, evolution, and diversification
-
Massova I, Kotra LP, Fridman R, Mobashery S: Matrix metalloproteinases: structures, evolution, and diversification. FASEB J 1998, 12:1075-1095.
-
(1998)
FASEB J
, vol.12
, pp. 1075-1095
-
-
Massova, I.1
Kotra, L.P.2
Fridman, R.3
Mobashery, S.4
-
45
-
-
18444397733
-
Crystal structure of human MMP9 in complex with a reverse hydroxamate inhibitor
-
Rowsell S, Hawtin P, Minshull CA, Jepson H: Crystal structure of human MMP9 in complex with a reverse hydroxamate inhibitor. J Mol Biol 2002, 319:173-181.
-
(2002)
J Mol Biol
, vol.319
, pp. 173-181
-
-
Rowsell, S.1
Hawtin, P.2
Minshull, C.A.3
Jepson, H.4
-
46
-
-
0030068937
-
The structural basis for the elastolytic activity of the 92-kDa and 72-kDa gelatinases. Role of the fibronectin type II-like repeats
-
Shipley JM, Doyle GA, Fliszar CJ, Ye QZ, Johnson LL, Shapiro SD, Welgus HG, Senior RM: The structural basis for the elastolytic activity of the 92-kDa and 72-kDa gelatinases. Role of the fibronectin type II-like repeats. J Biol Chem 1996, 271:4335-4341.
-
(1996)
J Biol Chem
, vol.271
, pp. 4335-4341
-
-
Shipley, J.M.1
Doyle, G.A.2
Fliszar, C.J.3
Ye, Q.Z.4
Johnson, L.L.5
Shapiro, S.D.6
Welgus, H.G.7
Senior, R.M.8
-
47
-
-
0036601151
-
Did evolution leap to create the protein universe?
-
Rost B: Did evolution leap to create the protein universe? Curr Opin Struct Biol 2002, 12:409-416.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 409-416
-
-
Rost, B.1
-
48
-
-
19944393249
-
Universal sharing patterns in proteomes and evolution of protein fold architecture and life
-
Caetano-Anolles G, Caetano-Anolles D: Universal sharing patterns in proteomes and evolution of protein fold architecture and life. J Mol Evol 2005, 60:484-498.
-
(2005)
J Mol Evol
, vol.60
, pp. 484-498
-
-
Caetano-Anolles, G.1
Caetano-Anolles, D.2
-
49
-
-
0036600834
-
Evolution of protein structures and functions
-
Kinch LN, Grishin NV: Evolution of protein structures and functions. Curr Opin Struct Biol 2002, 12:400-408.
-
(2002)
Curr Opin Struct Biol
, vol.12
, pp. 400-408
-
-
Kinch, L.N.1
Grishin, N.V.2
-
50
-
-
29244447181
-
Kalign - An accurate and fast multiple sequence alignment algorithm
-
Lassman T, Sonnhammer EL: Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics 2005, 6:298.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 298
-
-
Lassman, T.1
Sonnhammer, E.L.2
-
51
-
-
13444304365
-
Integr8 and genome reviews: Integrated views of complete genomes and proteomes
-
Kersey P, Bower L, Morris L, Horne A, Petryszack R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, et al.: Integr8 and genome reviews: integrated views of complete genomes and proteomes. Nucl Acids Res 2005, 33:D297-D302.
-
(2005)
Nucl Acids Res
, vol.33
-
-
Kersey, P.1
Bower, L.2
Morris, L.3
Horne, A.4
Petryszack, R.5
Kanz, C.6
Kanapin, A.7
Das, U.8
Michoud, K.9
Phan, I.10
-
52
-
-
0033957466
-
Database resources of the National Center for Biotechnology Information
-
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000, 28:10-14.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 10-14
-
-
Wheeler, D.L.1
Chappey, C.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Schuler, G.D.6
Tatusova, T.A.7
Rapp, B.A.8
-
53
-
-
0033976454
-
GenBank
-
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL: GenBank. Nucleic Acids Res 2000, 28:15-18.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 15-18
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
Wheeler, D.L.6
-
54
-
-
0036169928
-
Tolerating some redundancy significantly speeds up clustering of large protein databases
-
Li W, Jaroszewski L, Godzik A: Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics 2002, 18:77-82.
-
(2002)
Bioinformatics
, vol.18
, pp. 77-82
-
-
Li, W.1
Jaroszewski, L.2
Godzik, A.3
-
55
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Söding J: Protein homology detection by HMM-HMM comparison. Bioinformatics 2005, 21:951-960.
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Söding, J.1
-
56
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
57
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT: Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999, 292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
59
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman SB, Wunsch CD: A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 1970, 48:443-453.
-
(1970)
J Mol Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
|