Simultaneous detection of 19 K-ras mutations by free-solution conjugate electrophoresis of ligase detection reaction products on glass microchips

Electrophoresis

Volumn 34, Issue 4, 2013, Pages 590-597

  Albrecht, Jennifer Coyne ^a   Kotani, Akira ^b,c   Lin, Jennifer S ^a   Soper, Steven A ^b,d   Barron, Annelise E ^a  

^a Stanford University   (United States)

^b LOUISIANA STATE UNIVERSITY   (United States)

^c TOKYO UNIVERSITY OF PHARMACY AND LIFE SCIENCES   (Japan)

^d NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Drag tag; Free solution microchip electrophoresis; FSCE; LDR

Indexed keywords

ELECTRIC FIELDS; ELECTRIC POWER SYSTEMS; ELECTROPHORESIS; MICROPROCESSOR CHIPS; SCREENING;

DNA FRAGMENT; DRAG-TAG; FREE SOLUTIONS; FREE-SOLUTION CONJUGATE ELECTROPHORESIS; FREE-SOLUTION MICROCHIP ELECTROPHORESIS; LIGASE DETECTION REACTIONS; MICROCHIP ELECTROPHORESIS; POWER; SIMULTANEOUS DETECTION;

DRAG;

ARTICLE; CAPILLARY ELECTROPHORESIS; CHEMICAL REACTION; CONTROLLED STUDY; ELECTRIC CAPACITANCE; ELECTRIC FIELD; ELECTROPHORESIS; EQUILIBRIUM CONSTANT; FREE SOLUTION CONJUGATE ELECTROPHORESIS; GENE AMPLIFICATION; GENE MUTATION; LIGASE DETECTION REACTION; MICROCHIP ELECTROPHORESIS; ONCOGENE; ONCOGENE K RAS; POWER SUPPLY; SEPARATION TECHNIQUE;

EID: 84873994611     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201200462     Document Type: Article

References (39)

1. The Cancer Genome Atlas Research Network, Nature 2008, 455, 1061-1068.
2. Hampton, O. A., Den Hollander, P., Miller, C. A., Delgado, D. A., Li, J., Coarfa, C., Harris, R. A., Richards, S., Scherer, S. E., Muzny, D. M., Gibbs, R. A., Lee, A. V., Milosavljevic, A., Genome Res. 2009, 19, 167-177.
3. The Cancer Genome Atlas Research Network, Nature, 474, 609-615.
4. Shete, S., Hosking, F. J., Robertson, L. B., Dobbins, S. E., Sanson, M., Malmer, B., Simon, M., Marie, Y., Boisselier, B., Delattre, J. Y., Hoang-Xuan, K., El Hallani, S., Idbaih, A., Zelenika, D., Andersson, U., Henriksson, R., Bergenheim, A. T., Feychting, M., Lönn, S., Ahlbom, A., Schramm, J., Linnebank, M., Hemminki, K., Kumar, R., Hepworth, S. J., Price, A., Armstrong, G., Liu, Y., Gu, X., Yu, R., Lau, C., Schoemaker, M., Muir, K., Swerdlow, A., Lathrop, M., Bondy, M., Houlston, R. S., Nat. Genet. 2009, 41, 899-904.
5. Kim, H., Huang, W., Jiang, X., Pennicooke, B., Park, P. J., Johnson, M. D., Proc. Natl. Acad. Sci. 2010, 107, 2183-2188.
6. Barany, F., Proc. Natl. Acad. Sci. USA 1991, 88, 189-193.
7. Thomas, G., Sinville, R., Sutton, S., Farquar, H., Hammer, R. P., Soper, S. A., Cheng, Y. W., Barany, F., Electrophoresis 2004, 25, 1668-1677.
8. Wabuyele, M. B., Farquar, H., Stryjewski, W., Hammer, R. P., Soper, S. A., Cheng, Y. W., Barany, F., J. Am. Chem. Soc. 2003, 125, 6937-6945.
9. Khanna, M., Cao, W. G., Zirvi, M., Paty, P., Barany, F., Clin. Biochem. 1999, 32, 287-290.
10. Khanna, M., Park, P., Zirvi, M., Cao, W. G., Picon, A., Day, J., Paty, P., Barany, F., Oncogene 1999, 18, 27-38.
11. Hashimoto, M., Barany, F., Soper, S. A., Biosensors Bioelectronics 2006, 21, 1915-1923.
12. Hashimoto, M., Hupert, M. L., Murphy, M. C., Soper, S. A., Cheng, Y. W., Barany, F., Anal. Chem. 2005, 77, 3243-3255.
13. Gerry, N. P., Witowski, N. E., Day, J., Hammer, R. P., Barany, G., Barany, F., J. Mol. Biol. 1999, 292, 251-262.
14. Sidransky, D., Tokino, T., Hamilton, S. R., Kinzler, K. W., Levin, B., Frost, P., Vogelstein, B., Science 1992, 256, 102-105.
15. Otori, K., Oda, Y., Sugiyama, K., Hasebe, T., Mukai, V., Fujii, T., Tajiri, H., Yoshida, S., Fukushima, S., Esumi, H., Gut 1997, 40, 660-663.
16. Chiang, J. M., Cancer Lett. 1998, 126, 179-185.
17. Forrester, K., Almoguera, C., Han, K. Y., Grizzle, W. E., Perucho, M., Nature 1987, 327, 298-303.
18. Bos, J. L., Mut. Res. 1988, 195, 255-271.
19. Capella, G., Cronauermitra, S., Peinado, M. A., Perucho, M., Environ. Health Persp. 1991, 93, 125-131.
20. Finkelstein, S. D., Sayegh, R., Bakker, A., Swalsky, P., Arch. Surgery 1993, 128, 526-532.
21. Smith, A. J., Stern, H. S., Penner, M., Hay, K., Mitri, A., Bapat, B. V., Gallinger, S., Cancer Res. 1994, 54, 5527-5530.
22. Lièvre, A., Bachet, J. B., Le Corre, D., Boige, V., Landi, B., Emile, J. F., Côté, J. F., Tomasic, G., Penna, C., Ducreux, M., Rougier, P., Penault-Llorca, F., Laurent-Puig, P., Cancer Res. 2006, 66, 3992-3995.
23. Amado, R. G., Wolf, M., Peeters, M., Van Cutsem, E., Siena, S., Freeman, D. J., Juan, T., Sikorski, R., Suggs, S., Radinsky, R., Patterson, S. D., Chang, D. D., J. Clin. Oncol. 2008, 26, 1626-1634.
24. Sinville, R., Coyne, J., Meagher, R. J., Cheng, Y. W., Barany, F., Barron, A., Soper, S. A., Electrophoresis 2008, 29, 4751-4760.
25. Mayer, P., Slater, G. W., Drouin, G., Anal. Chem. 1994, 66, 1777-1780.
26. Meagher, R. J., Won, J. I., McCormick, L. C., Nedelcu, S., Bertrand, M. M., Bertram, J. L., Drouin, G., Barron, A. E., Slater, G. W., Electrophoresis 2005, 26, 331-350.
27. Albrecht, J. C., Lin, J. S., Barron, A. E., Anal. Chem. 2011, 83, 509-515.
28. Meagher, R. J., Coyne, J. A., Hestekin, C. N., Chiesl, T. N., Haynes, R. D., Won, J. I., Barron, A. E., Anal. Chem. 2007, 79, 1848-1854.
29. Vreeland, W. N., Barron, A. E., Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2000, 41, 1018-1019.
30. Zuckermann, R. N., Kerr, J. M., Kent, S. B. H., Moos, W. H., J. Am. Chem. Soc. 1992, 114, 10646-10647.
31. Lin, J. S., Albrecht, J. C., Wang, X., Meagher, R. J., Barron, A. E., Biomacromolecules 2011, 12, 2275-2284.
32. Wang, X., Albrecht, J. C., Lin, J. S., Barron, A. E., Biomacromolecules 2012, 13, 117-123.
33. Albrecht, J. C., Kerby, M. B., Niedringhaus, T. P., Lin, J. S., Wang, X., Barron, A. E., Electrophoresis 2011, 32, 1201-1208.
34. Vreeland, W. N., Meagher, R. J., Barron, A. E., Anal. Chem. 2002, 74, 4328-4333.
35. Won, J. I., Meagher, R. J., Barron, A. E., Electrophoresis 2005, 26, 2138-2148.
36. Meagher, R. J., Won, J. I., Coyne, J. A., Lin, J., Barron, A. E., Anal. Chem. 2008, 80, 2842-2848.
37. Albarghouthi, M. N., Buchholz, B. A., Huiberts, P. J., Stein, T. M., Barron, A. E., Electrophoresis 2002, 23, 1429-1440.
38. Shi, Y. N., Anderson, R. C., Electrophoresis 2003, 24, 3371-3377.
39. Fredlake, C. P., Hert, D. G., Kan, C. W., Chiesl, T. N., Root, B. E., Forster, R. E., Barron, A. E., Proc. Natl. Sci. USA 2008, 105, 476-481.