A 265-base DNA sequencing read by capillary electrophoresis with no separation matrix

Analytical Chemistry

Volumn 83, Issue 2, 2011, Pages 509-515

  Albrecht, Jennifer Coyne ^a   Lin, Jennifer S ^b   Barron, Annelise E ^a,b  

^a STANFORD UNIVERSITY   (United States)

^b Stanford University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AQUEOUS BUFFER; DNA FRAGMENT; DNA SEQUENCING; LINEAR CHARGES; MONODISPERSE; MULTICHANNEL SYSTEM; PROTEIN EXPRESSIONS; SEPARATION MATRIX; SEQUENCING SYSTEMS; VISCOUS SEPARATION;

AMINO ACIDS; CAPILLARY ELECTROPHORESIS; DNA; DNA SEQUENCES; DRAG; ELECTROCHEMISTRY; ELECTROPHORETIC MOBILITY; SIZE SEPARATION;

GENE ENCODING;

DNA; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CAPILLARY ELECTROPHORESIS; CHEMISTRY; DNA SEQUENCE; GENETICS; METABOLISM; METHODOLOGY;

AMINO ACID SEQUENCE; DNA; ELECTROPHORESIS, CAPILLARY; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, DNA;

EID: 78751559538     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac102188p     Document Type: Article

References (36)

1. Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., and Sayers, E. W. Nucleic Acids Res. 2010, 38, D46-51
2. Drmanac, R., Sparks, A. B., Callow, M. J., Halpern, A. L., Burns, N. L., Kermani, B. G., Carnevali, P., Nazarenko, I., Nilsen, G. B., Yeung, G., Dahl, F., Fernandez, A., Staker, B., Pant, K. P., Baccash, J., Borcherding, A. P., Brownley, A., Cedeno, R., Chen, L., Chernikoff, D., Cheung, A., Chirita, R., Curson, B., Ebert, J. C., and Hacker, C. R. Science 2010, 327, 78-81
3. Shendure, J., Porreca, G. J., Reppas, N. B., Lin, X. X., McCutcheon, J. P., Rosenbaum, A. M., Wang, M. D., Zhang, K., Mitra, R. D., and Church, G. M. Science 2005, 309, 1728-1732
4. Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y. J., Chen, Z. T., Dewell, S. B., Du, L., Fierro, J. M., Gomes, X. V., Godwin, B. C., He, W., Helgesen, S., Ho, C. H., Irzyk, G. P., Jando, S. C., Alenquer, M. L. I., Jarvie, T. P., Jirage, K. B., Kim, J. B., and Knight, J. R. Nature 2005, 437, 376-380
5. Ju, J., Kim, D. H., Bi, L., Meng, Q., Bai, X., Li, Z., Li, X., Marma, M. S., Shi, S., Wu, J., Edwards, J. R., Romu, A., and Turro, N. J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 19635-19640
6. Pushkarev, D., Neff, N. F., and Quake, S. R. Nat. Biotechnol. 2009, 27, 847-850
7. Kasianowicz, J. J., Brandin, E., Branton, D., and Deamer, D. W. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 13770-13773
8. Levene, M. J., Korlach, J., Turner, S. W., Foquet, M., Craighead, H. G., and Webb, W. W. Science 2003, 299, 682-686
9. Karow, J. Ion Torrent Systems Presents $50,000 Electronic Sequencing at AGBT. In Sequence, March 2, 2010 (http://www.genomeweb.com/ sequencing/ion-torrent-systems-presents-50000-electronic-sequencer-agbt).
10. Voelkerding, K. V., Dames, S. A., and Durtschi, J. D. Clin. Chem. 2009, 55, 641-658
11. Robinson, J., Waller, M. J., Parham, P., Bodmer, J. G., and Marsh, S. G. E. Nucleic Acids Res. 2001, 29, 210-213
12. Field, S. F., Nejentsev, S., Walker, N. M., Howson, J. M. M., Godfrey, L. M., Jolley, J. D., Hardy, M. P. A., and Todd, J. A. Diabetes 2008, 57, 1753-1756
13. Paegel, B. M., Emrich, C. A., Weyemayer, G. J., Scherer, J. R., and Mathies, R. A. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 574-579
14. Hert, D. G., Fredlake, C. P., and Barron, A. E. Electrophoresis 2008, 29, 4618-4626
15. Fredlake, C. P., Hert, D. G., Kan, C. W., Chiesl, T. N., Root, B. E., Forster, R. E., and Barron, A. E. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 476-481
16. Mayer, P., Slater, G. W., and Drouin, G. Anal. Chem. 1994, 66, 1777-1780
17. Heller, C., Slater, G. W., Mayer, P., Dovichi, N., Pinto, D., Viovy, J. L., and Drouin, G. J. Chromatogr. A 1998, 806, 113-121
18. Ren, H., Karger, A. E., Oaks, F., Menchen, S., Slater, G. W., and Drouin, G. Electrophoresis 1999, 20, 2501-2509
19. Vreeland, W. N. and Barron, A. E. Polym. Prepr. (Am. Chem. Soc., Div. Polym. Chem.) 2000, 41, 1018-1019
20. Vreeland, W. N., Desruisseaux, C., Karger, A. E., Drouin, G., Slater, G. W., and Barron, A. E. Anal. Chem. 2001, 73, 1795-1803
21. Vreeland, W. N., Slater, G. W., and Barron, A. E. Bioconjugate Chem. 2002, 13, 663-670
22. Meagher, R. J., Won, J. I., McCormick, L. C., Nedelcu, S., Bertrand, M. M., Bertram, J. L., Drouin, G., Barron, A. E., and Slater, G. W. Electrophoresis 2005, 26, 331-350
23. Won, J. I., Meagher, R. J., and Barron, A. E. Electrophoresis 2005, 26, 2138-2148
24. Meagher, R. J., Won, J. I., Coyne, J. A., Lin, J., and Barron, A. E. Anal. Chem. 2008, 80, 2842-2848
25. Haynes, R. D., Meagher, R. J., Won, J. I., Bogdan, F. M., and Barron, A. E. Bioconjugate Chem. 2005, 16, 929-938
26. Pennathur, S., Baldessari, F., Kattah, M. G., Steinman, J. B., Utz, P. J., and Santiago, J. G. Anal. Chem. 2007, 79, 8316-8322
27. Lau, H. W. and Archer, L. A. Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys. 2010, 81 031918
28. Sudor, J. and Novotny, M. V. Anal. Chem. 1995, 67, 4205-4209
29. Grosser, S. T., Savard, J. M., and Schneider, J. W. Anal. Chem. 2007, 79, 9513-9519
30. Savard, J. M., Grosser, S. T., and Schneider, J. W. Electrophoresis 2008, 29, 2779-2789
31. Lin, J. S., Albrecht, J. C., Wang, X., Meagher, R. J., and Barron, A. E. Biomacromolecules 2010, submitted.
32. Won, J. I. and Barron, A. E. Macromolecules 2002, 35, 8281-8287
33. Meagher, R. J., Coyne, J. A., Hestekin, C. N., Chiesl, T. N., Haynes, R. D., Won, J. I., and Barron, A. E. Anal. Chem. 2007, 79, 1848-1854
34. Meagher, R. J., McCormick, L. C., Haynes, R. D., Won, J. I., Lin, J. S., Slater, G. W., and Barron, A. E. Electrophoresis 2006, 27, 1702-1712
35. Nkodo, A. E., Garnier, J. M., Tinland, B., Ren, H. J., Desruisseaux, C., McCormick, L. C., Drouin, G., and Slater, G. W. Electrophoresis 2001, 22, 2424-2432
36. Heller, C. Electrophoresis 1999, 20, 1978-1986