Approaching real-time molecular diagnostics: Single-pair fluorescence resonance energy transfer (spFRET) detection for the analysis of low abundant point mutations in K-ras oncogenes

Journal of the American Chemical Society

Volumn 125, Issue 23, 2003, Pages 6937-6945

  Wabuyele, Musundi B ^a   Farquar, Hannah ^a   Stryjewski, Wieslaw ^a   Hammer, Robert P ^a   Soper, Steven A ^a   Cheng, Yu Wei ^b   Barany, Francis ^b  

^a LOUISIANA STATE UNIVERSITY   (United States)

^b WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FLUORESCENCE; GENES; ONCOLOGY; PHOTONS; SEMICONDUCTOR LASERS; TUMORS;

MOLECULAR DIAGNOSTICS;

MOLECULAR DYNAMICS;

FLUORESCENT DYE; GENOMIC DNA; LIGASE; PRIMER DNA;

ALLELE; ARTICLE; CANCER DIAGNOSIS; CODON; COLORECTAL CANCER; CONTROLLED STUDY; DEVICE; DIAGNOSTIC ACCURACY; DIAGNOSTIC TEST; DIAGNOSTIC VALUE; DIODE LASER; DNA DETERMINATION; ENERGY TRANSFER; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENE AMPLIFICATION; GENE FREQUENCY; GENE IDENTIFICATION; GENE MUTATION; GENE PROBE; GENE STRUCTURE; GENE TARGETING; GENETIC PROCEDURES; HUMAN; HUMAN CELL; ONCOGENE K RAS; POINT MUTATION; POLYMERASE CHAIN REACTION; SPECTROFLUOROMETRY; THERMAL ANALYSIS;

CODON; COLORECTAL NEOPLASMS; DNA; FLUORESCENCE RESONANCE ENERGY TRANSFER; GENES, RAS; HT29 CELLS; HUMANS; LIGASE CHAIN REACTION; NUCLEIC ACID CONFORMATION; POINT MUTATION; POLYMERASE CHAIN REACTION;

EID: 0038581841     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja034716g     Document Type: Article

References (32)

1. Chen, X.; Kwok, Y. P. Nucleic Acids Res. 1997, 25, 347-353.
2. Holland, P. M.; Abramson, D. R.; Watson, R.; Gelfland, H. D. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 7276-7280.
3. Livak, K. J.; Marmaro, J.; Todd, A. J. Nat. Genet. 1995, 9b. 341-342.
4. Tyagi, S.; Bratu, D. P.; Kramer, F. R. Nat. Biotechnol. 1998, 16, 49-53.
5. Barany, F. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 189-193.
6. Chen, X.; Livak, K. J.; Kwok, Y. P. Genome Res. 1998, 8. 549-556.
7. Landegren, U.; Kaiser, R.; Sanders, J.; Hood, L. Science, 1988, 241, 1077-1080.
8. Lizardi, P. M.; Huang, X.; Zhu, Z.; Bray-Ward, P.; Thomas, D. C.; Ward, C. D. Nat. Genet. 1998, 19, 225-232.
9. Zhong, X.; Lizardi, M. P.; Huang, X.; Bray-Ward, L. P.; Ward, C. D. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 3940-3945.
10. Hall, J. G.; Eis, P. S.; Law, S. M.; Reynaldo, L. P.; Prudent, J. R.; Marshall, D. J.; Allawi, H. T.; Mast, A. L.; Dahlberg, J. E.; Kwiatkowski, R. W.; Arruda, M. D.; Neri, B. P.; Lyamichev, V. I. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 8272-8277.
11. Park, S. J.; Taton, T. A.; Mirkin, C. A. Science 2002, 295, 1503-1506.
12. Huang, J. T.; Minghsun, L.; Knight, D. L.; Grody, W. W.; Miller, F. J.; Ho, C. M. Nucleic Acids Res. 2002, 30, e55.
13. Castro, A.; Williams, J. G. K. Anal. Chem. 1997, 69, 3915-3920.
14. Castro, A.; Okinaka, R. T. Analyst 2000, 125, 9-11.
15. Knemeyer, J.; Marmé, N.; Sauer, M. Anal. Chem. 2000, 72, 3717-3724.
16. Khanna, M.; Park, P.; Zirvi, M.; Cao, W.; Picon, A.; Day, J.; Paty, P.; Barany, F. Oncogene, 1999, 18, 27-38.
17. Ford, S. M.; Davis, J.; Kar, S.; Qi, S. D.; McWhorter, S.; Soper, S. A.; Malek, C. K. J. Biochem. Eng. 1999, 121, 13-21.
18. SantaLucia, J. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 1460-1465.
19. Zhang, P.; Beck, T.; Tan, W. Angew. Chem., Int. Ed. 2001, 40, 402-405.
20. Haab, B. B.; Mathies, R. A. Anal. Chem. 1999, 71, 5137-5145.
21. Jacobson, C. S.; Ramsey, J. M. Anal. Chem. 1997, 69, 3212-3217.
22. Shera, E. B.; Seitzinger, N. K.; Davis, L. M.; Keller, R. A.; Soper, S. A. Chem. Phys. Lett. 1990, 174, 553-557.
23. Soper, S. A.; Mattingly, Q.; Vegunta, P. Anal. Chem. 1993, 65, 740-748.
24. Khanna, M.; Cao, W.; Zirvi, M.; Paty, P.; Barany, F. Clin. Biochem, 1999, 32, 287-290.
25. Tyagi, S.; Kramer, F. R. Nat. Biotechnol. 1996, 14, 303-308.
26. Orbons, L. P.; van der Marel, G. A.; van Boom, J. H.; Altona, C. Nucleic Acids Res. 1986, 14, 4187-4196.
27. Xodo, L. E.; Manzini, G.; Quadrifoglio, F.; van der Marel, G. A.; van Boom, J. H. Nucleic Acids Res. 1986, 14, 5389-5398.
28. Senior, M. M.; Jones, R. A.; Breslauer, K. J. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 6242-6246.
29. Zhu, D.; Keohavong, P.; Finkelstein, S. D.; Swalsky, P.; Bakker, A.; Weissfeld, J.; Srivastava, S.; Whiteside, T. L. Cancer Res. 1997, 57, 2485-2492.
30. Bos, J. L. Mutat. Res. 1988, 195, 255-271.
31. Neiderhauser, C.; Kaempf, L.; Heinzer, I. Eur. J. Clin. Microbiol. Infect. Dis. 2000, 19, 477-480.
32. Soper, S. A.; Legendre, B. L. Appl. Spectrosc. 1998, 52, 1-5.