Multiplexed p53 mutation detection by free-solution conjugate microchannel electrophoresis with polyamide drag-tags

Analytical Chemistry

Volumn 79, Issue 5, 2007, Pages 1848-1854

  Meagher, Robert J ^a,c   Coyne, Jennifer A ^a   Hestekin, Christa N ^a   Chiesl, Thomas N ^a   Haynes, Russell D ^b   Won, Jong In ^a,d   Barron, Annelise E ^a,b  

^a Northwestern University   (United States)

^b NORTHWESTERN UNIVERSITY   (United States)

^c SANDIA NATIONAL LABORATORIES   (United States)

^d Hong Ik University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CAPILLARITY; ELECTROPHORESIS; MICROCHANNELS; MICROFLUIDICS; MUTAGENESIS; POLYAMIDES;

DRAG TAGGED PRIMERS; FREE SOLUTION CONJUGATE ELECTROPHORESIS (FSCE); GENOTYPING REACTIONS; MICROCHANNEL ELECTROPHORESIS; MICROFLUIDIC CHIPS; MUTANTS;

GENES;

POLYAMIDE; PROTEIN P53;

ACCURACY; ARTICLE; ASSAY; CAPILLARY ELECTROPHORESIS; DEVICE; ELECTROPHORESIS; EXON; FREE SOLUTION CONJUGATE ELECTROPHORESIS; GEL ELECTROPHORESIS; GENE LOCUS; GENE MUTATION; GENOTYPE; HIGH THROUGHPUT SCREENING; INTERMETHOD COMPARISON; MICROFLUIDICS; MUTANT; SEPARATION TECHNIQUE; SYNTHESIS;

DNA MUTATIONAL ANALYSIS; DNA PRIMERS; ELECTROPHORESIS, MICROCHIP; GENOTYPE; HUMANS; NYLONS; SOLUTIONS; TUMOR SUPPRESSOR PROTEIN P53;

EID: 33847686373     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac061903z     Document Type: Article

References (48)

1. Collins, F. S.; Brooks, L. D.; Chakravarti, A. Genome Res. 1998, 8, 1229-1231.
2. Brookes, A. J. Gene 1999, 234, 177-186.
3. Strittmatter, W. J.; Saunders, A. M.; Schmechel, D.; Pericakvance, M.; Enghild, J.; Salvesen, G. S.; Roses, A. D. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 1977-1981.
4. Strittmatter, W. J.; Roses, A. D. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 4725-4727.
5. Greenblatt, M. S.; Bennett, W. P.; Hollstein, M.; Harris, C. C. Cancer Res. 1994, 54, 4855-4878.
6. Soussi, T.; Beroud, C. Nat. Rev. Cancer 2001, 1, 233-240.
7. Soussi, T.; Lozano, G. Biochem. Biophys. Res. Commun. 2005, 331, 834-842.
8. Birch, J. M.; Alston, R. D.; McNally, R. J.; Evans, D. G.; Kelsey, A. M.; Harris, M.; Eden, O. B.; Varley, J. M. Oncogene 2001, 20, 4621-4628.
9. Olivier, M.; Goldgar, D. E.; Sodha, N.; Ohgaki, H.; Kleihues, P.; Hainaut, P.; Eeles, R. A. Cancer Res. 2003, 63, 6643-6650.
10. Kirk, B. W.; Feinsod, M.; Favis, R.; Kliman, R. M.; Barany, F. Nucleic Acids Res. 2002, 30, 3295-3311.
11. Landegren, U.; Nilsson, M.; Kwok, P. Y. Genome Res. 1998, 8, 769-776.
12. Chen, X.; Sullivan, P. F. Pharmacogenomics J. 2003, 3, 77-96.
13. Syvanen, A. C.; Aaltosetala, K.; Harju, L.; Kontula, K.; Soderlund, H. Genomics 1990, 8, 684-692.
14. Pastinen, T.; Partanen, J.; Syvanen, A. C. Clin. Chem. 1996, 42, 1391-1397.
15. Pastinen, T.; Kurg, A.; Metspalu, A.; Peltonen, L.; Syvanen, A. C. Genome Res. 1997, 7, 606-614.
16. Sanger, F.; Nicklen, S.; Coulson, A. R. Proc. Natl. Acad. Sci. U.S.A. 1977, 74, 5463-5467.
17. Ross, P.; Hall, L.; Smirnov, I.; Haff, L. Nat. Biotechnol. 1998, 16, 1347-1351.
18. Kim, S.; Ulz, M. E.; Nguyen, T.; Li, C. M.; Sato, T.; Tycko, B.; Ju, J. Genomics 2004, 83, 924-931.
19. Bell, P. A.; Chaturvedi, S.; Gelfand, C. A.; Huang, C. Y.; Kochersperger, M.; Kopla, R.; Modica, F.; Pohl, M.; Varde, S.; Zhao, R. B.; Zhao, X. J.; Boyce-Jacino, M. T. Biotechniques 2002, 32, S70-S77.
20. Makridakis, N. M.; Reichardt, J. K. V. Biotechniques 2001, 31, 1374-1380.
21. Mayer, P.; Slater, G. W.; Drouin, G. Anal. Chem. 1994, 66, 1777-1780.
22. Heller, C.; Slater, G. W.; Mayer, P.; Dovichi, N.; Pinto, D.; Viovy, J. L.; Drouin, G. J. Chromatogr., A 1998, 806, 113-121.
23. Ren, H.; Karger, A. E.; Oaks, F.; Menchen, S.; Slater, G. W.; Drouin, G. Electrophoresis 1999, 20, 2501-2509.
24. Meagher, R. J.; Won, J. I.; McCormick, L. C.; Nedelcu, S.; Bertrand, M. M.; Bertram, J. L.; Drouin, G.; Barron, A. E.; Slater, G. W. Electrophoresis 2005, 26, 331-350.
25. Grossman, P. D. F.; Menchen, S. M.; Woo, S. L.; Winn-Deen, E. S. World Patent W09320236AI, 1993.
26. Noolandi, J. Electrophoresis 1992, 13, 394-395.
27. Vreeland, W. N.; Desruisseaux, C.; Karger, A. E.; Drouin, G.; Slater, G. W.; Barron, A. E. Anal. Chem. 2001, 73, 1795-1803.
28. Vreeland, W. N.; Slater, G. W.; Barron, A. E. Bioconjugate Chem. 2002, 13, 663-670.
29. Won, J. I.; Meagher, R. J.; Barron, A. E. Electrophoresis 2005, 26, 2138-2148.
30. Haynes, R. D.; Meagher, R. J.; Won, J. I.; Bogdan, F. M.; Barron, A. E. Bioconjugate Chem. 2005, 16, 929-938.
31. Sudor, J.; Novotny, M. V. Anal. Chem. 1997, 69, 3199-3204.
32. Sudor, J.; Novotny, M. V. Anal. Chem. 1995, 67, 4205-4209.
33. Vreeland, W. N.; Meagher, R. J.; Barron, A. E. Anal. Chem. 2002, 74, 4328-4333.
34. Sanchez, J. J.; Phillips, C.; Borsting, C.; Balogh, K.; Bogus, M.; Fondevila, M.; Harrison, C. D.; Musgrave-Brown, E.; Salas, A.; Syndercombe-Court, D.; Schneider, P. M.; Carracedo, A.; Morling, N. Electrophoresis 2006, 27, 1713-1724.
35. Zuckermann, R. N.; Kerr, J. M.; Kent, S. B. H.; Moos, W. H. J. Am. Chem. Soc. 1992, 114, 10646-10647.
36. Won, J. I.; Barron, A. E. Macromolecules 2002, 35, 8281-8287.
37. Won, J. I.; Meagher, R. J.; Barron, A. E. Biomacromolecules 2004, 5, 618-627.
38. Chiesl, T. N.; Shi, W.; Barron, A. E. Anal. Chem. 2005, 77, 772-779.
39. Shultz-Lockyear, L. L.; Colyer, C. L.; Fan, Z. H.; Roy, K. I.; Harrison, D. J. Electrophoresis 1999, 20, 529-538.
40. Albarghouthi, M. N.; Buchholz, B. A.; Huiberts, P. J.; Stein, T. M.; Barron, A. E. Electrophoresis 2002, 23, 1429-1440.
41. Albarghouthi, M. N.; Stein, T. M.; Barron, A. E. Electrophoresis 2003, 24, 1166-1175.
42. Hirschhorn, J. N.; Sklar, P.; Linbland-Toh, K.; Lim, Y.-M.; Ruiz-Guiterrez, M.; Bolk, S.; Langhorst, B.; Schaffner, S.; Winchester, E.; Lander, E. S. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 12164-12169.
43. Rachlin, J.; Ding, C. M.; Cantor, C.; Kasif, S. Nucleic Acids Res. 2005, 33, W544-W547.
44. Kaderali, L.; Deshpande, A.; Nolan, J. P.; White, P. S. Nucleic Acids Res. 2003, 31, 1796-1802.
45. Hermanson, G. Bioconjugate Techniques; Academic Press, Inc: San Diego, CA, 1996.
46. Paegel, B. M.; Blazej, R. G.; Mathies, R. A. Curr. Opin. Biotechnol. 2003, 14, 42-50.
47. Paegel, B. M.; Yeung, S. H. I.; Mathies, R. A. Anal. Chem. 2002, 74, 5092-5098.
48. Ferrance, J. P.; Wu, Q. R.; Giordano, B.; Hernandez, C.; Kwok, Y.; Snow, K.; Thibodeau, S.; Landers, J. P. Anal. Chim. Acta 2003, 500, 223-236.