Label-free quantitative analysis for studying the interactions between nanoparticles and plasma proteins

Analytical and Bioanalytical Chemistry

Volumn 405, Issue 2-3, 2013, Pages 635-645

  Capriotti, Anna Laura ^a   Caracciolo, Giulio ^a   Caruso, Giuseppe ^a   Cavaliere, Chiara ^a   Pozzi, Daniela ^a   Samperi, Roberto ^a   Laganà, Aldo ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

DOTAP; Gene delivery; Label free quantification; Lipoplexes; Liposome; Mass spectrometry; Protein corona; Proteomics

Indexed keywords

BIOCHEMISTRY; GENE THERAPY; GENE TRANSFER; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; LIPOSOMES; MASS SPECTROMETRY; PROTEOMICS;

DOTAP; GENE DELIVERY; LABEL FREE; LIPOPLEXES; PROTEIN CORONAS;

PROTEINS;

EID: 84873701163     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-011-5691-y     Document Type: Article

References (34)

1. E Marshall 2002 What to do when clear success comes with an unclear risk? Science 298 510 511 10.1126/science.298.5593.510 1:CAS:528:DC%2BD38XotVWitLY%3D
2. PL Felgner TR Gadek M Holm R Roman HW Chan M Wenz JP Northrop GM Ringold M Danielsen 1987 Lipofection: a highly efficient, lipid-mediated DNA-transfection procedure Proc Natl Acad Sci U S A 84 7413 7417 10.1073/pnas.84.21.7413 1:CAS:528:DyaL1cXjtlSgug%3D%3D
3. R Leventis JR Silvius 1990 Interactions of mammalian cells with lipid dispersions containing novel metabolizable cationic amphiphiles Biochim Biophys Acta Biomembr 1023 124 132 10.1016/0005-2736(90)90017-I 1:CAS:528: DyaK3cXkt1SntLg%3D
4. X Gao L Huang 1991 A novel cationic liposome reagent for efficient transfection of mammalian cells Biochem Biophys Res Commun 179 280 285 10.1016/0006-291X(91)91366-K 1:CAS:528:DyaK3MXmt1Ggu74%3D
5. JH Felgner R Kumar CN Sridhar CJ Wheeler YJ Tsai R Border P Ramsey M Martin PL Felgner 1994 Enhanced gene delivery and mechanism studies with a novel series of cationic lipid formulations J Biol Chem 269 2550 2561 1:CAS:528:DyaK2cXhsFejsr0%3D
6. I Koltover T Salditt JO Radler CR Safinya 1998 An inverted hexagonal phase of cationic liposome-DNA complexes related to DNA release and delivery Science 281 78 81 10.1126/science.281.5373.78 1:CAS:528:DyaK1cXksVOnsb8%3D
7. G Caracciolo R Caminiti D Pozzi M Friello F Boffi AC Castellano 2002 Self-assembly of cationic liposomes-DNA complexes: a structural and thermodynamic study by EDXD Chem Phys Lett 351 222 228 10.1016/S0009-2614(01) 01391-4 1:CAS:528:DC%2BD38XktFWnsQ%3D%3D
8. K Kogure R Moriguchi K Sasaki M Ueno S Futaki H Harashima 2004 Development of a non-viral multifunctional envelope-type nano device by a novel lipid film hydration method J Control Release 98 317 323 10.1016/j.jconrel.2004. 04.024 1:CAS:528:DC%2BD2cXlslGisLs%3D
9. J Yamauchi Y Hayashi K Kajimoto H Akita H Harashima 2010 Comparison between a multifunctional envelope-type nano device and lipoplex for delivery to the liver Biol Pharm Bull 33 926 929 10.1248/bpb.33.926 1:CAS:528: DC%2BC3cXos1OhtLk%3D
10. T Cedervall I Lynch S Lindman T Berggard E Thulin H Nilsson KA Dawson S Linse 2007 Understanding the nanoparticle-protein corona using methods to quantify exchange rates and affinities of proteins for nanoparticles Proc Natl Acad Sci U S A 104 2050 2055 10.1073/pnas.0608582104 1:CAS:528: DC%2BD2sXisVWrsro%3D
11. B Sahoo M Goswami S Nag S Maiti 2007 Spontaneous formation of a protein corona prevents the loss of quantum dot fluorescence in physiological buffers Chem Phys Lett 445 217 220 10.1016/j.cplett.2007.07.075 1:CAS:528: DC%2BD2sXhtVWjt7bK
12. I Lynch KA Dawson 2008 Protein-nanoparticle interactions NanoToday 3 40 47 1:CAS:528:DC%2BD1cXhtFemsb3P
13. I Lynch T Cedervall M Lundqvist C Cabaleiro-Lago S Linse KA Dawson 2007 The nanoparticle-protein complex as a biological entity; a complex fluids and surface science challenge for the 21st century Adv Colloid Interface Sci 134 135 167 174 10.1016/j.cis.2007.04.021
14. DE Owens III NA Peppas 2006 Opsonization, biodistribution, and pharmacokinetics of polymeric nanoparticles Int J Pharm 307 93 102 10.1016/j.ijpharm.2005.10.010 1:CAS:528:DC%2BD2MXht12isrvM
15. G Caracciolo L Callipo S Candeloro De Sanctis C Cavaliere D Pozzi A Laganà 2010 Surface adsorption of protein corona controls the cell internalization mechanism of DC-Chol-DOPE/DNA lipoplexes in serum Biochim Biophys Acta 1798 536 543 10.1016/j.bbamem.2009.11.007 1:CAS:528: DC%2BC3cXitlWgsLY%3D
16. A Motoyama JR Yates III 2008 Multidimensional LC separations in shotgun proteomics Anal Chem 80 7187 7193 10.1021/ac8013669 1:CAS:528:DC%2BD1cXhtFKqs7zF
17. H Liu RG Sadygov JR Yates III 2004 A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal Chem 76 4193 4201 10.1021/ac0498563 1:CAS:528:DC%2BD2cXksVKiur8%3D
18. PV Bondarenko D Chelius TA Shaler 2002 Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry Anal Chem 74 4741 4749 10.1021/ac0256991 1:CAS:528:DC%2BD38Xmt1Slur0%3D
19. D Chelius PV Bondarenko 2002 Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry J Proteome Res 1 317 323 10.1021/pr025517j 1:CAS:528:DC%2BD38Xkt1Cksrk%3D
20. G Wang WW Wu W Zeng CL Chou RF Shen 2006 Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: reproducibility, linearity, and application with complex proteomes J Proteome Res 5 1214 1223 10.1021/pr050406g 1:CAS:528:DC%2BD28XisFyru7s%3D
21. G Caracciolo D Pozzi AC Capriotti C Marianecci M Carafa C Marchini M Montani A Amici H Amenitsch MA Digman E Gratton SS Sanchez A Laganà 2011 Factors determining the superior performance of Lipid-DNA/Protammine Nanoparticles over Lipoplexes J Med Chem 54 4160 4171 10.1021/jm200237p 1:CAS:528:DC%2BC3MXmslGmtrY%3D
22. AL Capriotti G Caracciolo G Caruso D Pozzi R Samperi A Laganà 2010 Analysis of plasma protein adsorption onto DC-Chol-DOPE cationic liposomes by HPLC-CHIP coupled to a Q-TOF mass spectrometer Anal Bioanal Chem 389 2777 2894
23. B Zhang NC VerBerkmoes MA Langston E Uberbacher RL Hettich NF Samatova 2006 Detecting differential and correlated protein expression in label-free shotgun proteomics J Proteome Res 5 2909 2918 10.1021/pr0600273 1:CAS:528:DC%2BD28XhtVGmsbvI
24. EJ Foss D Radulovic SA Shaffer DM Ruderfer A Bedalov DR Goodlett L Kruglyak 2007 Genetic basis of proteome variation in yeast Nat Genet 39 1369 1375 10.1038/ng.2007.22 1:CAS:528:DC%2BD2sXht1aqurbL
25. M Gstaiger R Aebersold 2009 Applying mass spectrometry-based proteomics to genetics, genomics and network biology Nat Rev Genet 10 617 627 10.1038/nrg2633 1:CAS:528:DC%2BD1MXhtVWhsLzP
26. C Choudhary M Mann 2010 Decoding signalling networks by mass spectrometry-based proteomics Nat Rev Mol Cell Biol 11 427 439 10.1038/nrm2900 1:CAS:528:DC%2BC3cXlvVOmsLk%3D
27. G Caracciolo D Pozzi R Caminiti 2005 Lipid mixing upon deoxyribonucleic acid-induced liposomes fusion investigated by synchrotron small-angle x-ray scattering Appl Phys Lett 87 133901 133903 10.1063/1.2058202
28. BC Searle 2010 Scaffold: a bioinformatic tool for validating MS-MS-based proteomic studies Proteomics 10 1265 1269 10.1002/pmic.200900437 1:CAS:528:DC%2BC3cXjvFalu7s%3D
29. A Keller AI Nesvizhskii E Kolker R Aebersold 2002 Empirical statistical model to estimate the accuracy of peptide identifications made by MS-MS and database search Anal Chem 74 5383 5392 10.1021/ac025747h 1:CAS:528: DC%2BD38XmvVyktL4%3D
30. AI Nesvizhskii A Keller E Kolker RA Aebersold 2003 Statistical model for identifying proteins by tandem mass spectrometry Anal Chem 75 4646 4658 10.1021/ac0341261 1:CAS:528:DC%2BD3sXltlynt70%3D
31. Gene ontology project. http://www.geneontology.org
32. National Center for Biotechnology Information. http://www.ncbi.nlm.nih. gov
33. AL Capriotti G Caracciolo G Caruso P Foglia D Pozzi R Samperi A Laganà 2011 Differential analysis of "protein corona" profile adsorbed onto different nonviral gene delivery systems Anal Biochem 419 180 189 10.1016/j.ab.2011.08.003 1:CAS:528:DC%2BC3MXhtlejtLbP
34. E Katz M Fon RA Eigenheer BS Phinney JN Fass D Lin A Sadka EA Blumwald 2010 Label-free differential quantitative mass spectrometry method for the characterization and identification of protein changes during citrus fruit development Proteome Sci 8 68 10.1186/1477-5956-8-68 1:CAS:528: DC%2BC3cXhs1eit7fM