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Volumn 8, Issue 2, 2013, Pages

Transition of a microRNA from Repressing to Activating Translation Depending on the Extent of Base Pairing with the Target

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H2A; MESSENGER RNA; MICRORNA; MICRORNA 3; UNCLASSIFIED DRUG;

EID: 84873552830     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0055672     Document Type: Article
Times cited : (31)

References (52)
  • 1
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 2
    • 84858446579 scopus 로고    scopus 로고
    • MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship
    • Pasquinelli AE, (2012) MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship. Nat Rev Genet 13: 271-282.
    • (2012) Nat Rev Genet , vol.13 , pp. 271-282
    • Pasquinelli, A.E.1
  • 3
    • 84862778053 scopus 로고    scopus 로고
    • Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish
    • Bazzini AA, Lee MT, Giraldez AJ, (2012) Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 336: 233-237.
    • (2012) Science , vol.336 , pp. 233-237
    • Bazzini, A.A.1    Lee, M.T.2    Giraldez, A.J.3
  • 4
    • 84859632747 scopus 로고    scopus 로고
    • miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay
    • Djuranovic S, Nahvi A, Green R, (2012) miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay. Science 336: 237-240.
    • (2012) Science , vol.336 , pp. 237-240
    • Djuranovic, S.1    Nahvi, A.2    Green, R.3
  • 5
    • 24144494563 scopus 로고    scopus 로고
    • The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans
    • Abbott AL, Alvarez-Saavedra E, Miska EA, Lau NC, Bartel DP, et al. (2005) The let-7 MicroRNA family members mir-48, mir-84, and mir-241 function together to regulate developmental timing in Caenorhabditis elegans. Dev Cell 9: 403-414.
    • (2005) Dev Cell , vol.9 , pp. 403-414
    • Abbott, A.L.1    Alvarez-Saavedra, E.2    Miska, E.A.3    Lau, N.C.4    Bartel, D.P.5
  • 6
    • 0346727524 scopus 로고    scopus 로고
    • MicroRNAs modulate hematopoietic lineage differentiation
    • Chen CZ, Li L, Lodish HF, Bartel DP, (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
    • (2004) Science , vol.303 , pp. 83-86
    • Chen, C.Z.1    Li, L.2    Lodish, H.F.3    Bartel, D.P.4
  • 8
    • 31744432337 scopus 로고    scopus 로고
    • The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation
    • Chen JF, Mandel EM, Thomson JM, Wu Q, Callis TE, et al. (2006) The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 38: 228-233.
    • (2006) Nat Genet , vol.38 , pp. 228-233
    • Chen, J.F.1    Mandel, E.M.2    Thomson, J.M.3    Wu, Q.4    Callis, T.E.5
  • 9
    • 0037418839 scopus 로고    scopus 로고
    • bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke J, Hipfner DR, Stark A, Russell RB, Cohen SM, (2003) bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113: 25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 10
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • Calin GA, Croce CM, (2006) MicroRNA signatures in human cancers. Nat Rev Cancer 6: 857-866.
    • (2006) Nat Rev Cancer , vol.6 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 11
    • 20444460289 scopus 로고    scopus 로고
    • MicroRNA expression profiles classify human cancers
    • Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, et al. (2005) MicroRNA expression profiles classify human cancers. Nature 435: 834-838.
    • (2005) Nature , vol.435 , pp. 834-838
    • Lu, J.1    Getz, G.2    Miska, E.A.3    Alvarez-Saavedra, E.4    Lamb, J.5
  • 12
    • 33745249539 scopus 로고    scopus 로고
    • Viruses and microRNAs
    • Cullen BR, (2006) Viruses and microRNAs. Nat Genet 38Suppl: S25-30.
    • (2006) Nat Genet , vol.38
    • Cullen, B.R.1
  • 13
    • 80051781256 scopus 로고    scopus 로고
    • Antiviral effects of human microRNAs and conservation of their target sites
    • Russo A, Potenza N, (2011) Antiviral effects of human microRNAs and conservation of their target sites. FEBS Lett 585: 2551-2555.
    • (2011) FEBS Lett , vol.585 , pp. 2551-2555
    • Russo, A.1    Potenza, N.2
  • 15
    • 58849093262 scopus 로고    scopus 로고
    • Revisiting the principles of microRNA target recognition and mode of action
    • Brodersen P, Voinnet O, (2009) Revisiting the principles of microRNA target recognition and mode of action. Nat Rev Mol Cell Biol 10: 141-148.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , pp. 141-148
    • Brodersen, P.1    Voinnet, O.2
  • 16
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP, (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 17
    • 0037144546 scopus 로고    scopus 로고
    • A microRNA in a multiple-turnover RNAi enzyme complex
    • Hutvagner G, Zamore PD, (2002) A microRNA in a multiple-turnover RNAi enzyme complex. Science 297: 2056-2060.
    • (2002) Science , vol.297 , pp. 2056-2060
    • Hutvagner, G.1    Zamore, P.D.2
  • 18
    • 2142654329 scopus 로고    scopus 로고
    • MicroRNA-directed cleavage of HOXB8 mRNA
    • Yekta S, Shih IH, Bartel DP, (2004) MicroRNA-directed cleavage of HOXB8 mRNA. Science 304: 594-596.
    • (2004) Science , vol.304 , pp. 594-596
    • Yekta, S.1    Shih, I.H.2    Bartel, D.P.3
  • 20
    • 49649119633 scopus 로고    scopus 로고
    • MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs
    • Umbach JL, Kramer MF, Jurak I, Karnowski HW, Coen DM, et al. (2008) MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs. Nature 454: 780-783.
    • (2008) Nature , vol.454 , pp. 780-783
    • Umbach, J.L.1    Kramer, M.F.2    Jurak, I.3    Karnowski, H.W.4    Coen, D.M.5
  • 21
    • 50849117820 scopus 로고    scopus 로고
    • Importance of translation and nonnucleolytic ago proteins for on-target RNA interference
    • Wu L, Fan J, Belasco JG, (2008) Importance of translation and nonnucleolytic ago proteins for on-target RNA interference. Curr Biol 18: 1327-1332.
    • (2008) Curr Biol , vol.18 , pp. 1327-1332
    • Wu, L.1    Fan, J.2    Belasco, J.G.3
  • 22
    • 80055093663 scopus 로고    scopus 로고
    • Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA
    • Li W, Saraiya AA, Wang CC, (2011) Gene regulation in Giardia lambia involves a putative microRNA derived from a small nucleolar RNA. PLoS Negl Trop Dis 5: e1338.
    • (2011) PLoS Negl Trop Dis , vol.5
    • Li, W.1    Saraiya, A.A.2    Wang, C.C.3
  • 23
    • 84865340173 scopus 로고    scopus 로고
    • The profile of snoRNA-derived microRNAs that regulate expression of variant surface proteins in Giardia lamblia
    • Li W, Saraiya AA, Wang CC, (2012) The profile of snoRNA-derived microRNAs that regulate expression of variant surface proteins in Giardia lamblia. Cell Microbiol 14: 1455-1473.
    • (2012) Cell Microbiol , vol.14 , pp. 1455-1473
    • Li, W.1    Saraiya, A.A.2    Wang, C.C.3
  • 24
    • 81755161586 scopus 로고    scopus 로고
    • A microRNA derived from an apparent canonical biogenesis pathway regulates variant surface protein gene expression in Giardia lamblia
    • Saraiya AA, Li W, Wang CC, (2011) A microRNA derived from an apparent canonical biogenesis pathway regulates variant surface protein gene expression in Giardia lamblia. RNA 17: 2152-2164.
    • (2011) RNA , vol.17 , pp. 2152-2164
    • Saraiya, A.A.1    Li, W.2    Wang, C.C.3
  • 25
    • 57149094023 scopus 로고    scopus 로고
    • snoRNA, a novel precursor of microRNA in Giardia lamblia
    • Saraiya AA, Wang CC, (2008) snoRNA, a novel precursor of microRNA in Giardia lamblia. PLoS Pathog 4: e1000224.
    • (2008) PLoS Pathog , vol.4
    • Saraiya, A.A.1    Wang, C.C.2
  • 26
    • 30844438338 scopus 로고    scopus 로고
    • Structural basis for double-stranded RNA processing by Dicer
    • Macrae IJ, Zhou K, Li F, Repic A, Brooks AN, et al. (2006) Structural basis for double-stranded RNA processing by Dicer. Science 311: 195-198.
    • (2006) Science , vol.311 , pp. 195-198
    • Macrae, I.J.1    Zhou, K.2    Li, F.3    Repic, A.4    Brooks, A.N.5
  • 28
    • 58149200936 scopus 로고    scopus 로고
    • GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
    • Aurrecoechea C, Brestelli J, Brunk BP, Carlton JM, Dommer J, et al. (2009) GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Res 37: D526-530.
    • (2009) Nucleic Acids Res , vol.37
    • Aurrecoechea, C.1    Brestelli, J.2    Brunk, B.P.3    Carlton, J.M.4    Dommer, J.5
  • 29
    • 52749083438 scopus 로고    scopus 로고
    • Design and delivery of antisense oligonucleotides to block microRNA function in cultured Drosophila and human cells
    • Horwich MD, Zamore PD, (2008) Design and delivery of antisense oligonucleotides to block microRNA function in cultured Drosophila and human cells. Nat Protoc 3: 1537-1549.
    • (2008) Nat Protoc , vol.3 , pp. 1537-1549
    • Horwich, M.D.1    Zamore, P.D.2
  • 30
    • 0033990618 scopus 로고    scopus 로고
    • Development of a tetracycline controlled gene expression system in the parasitic protozoan Giardia lamblia
    • Sun CH, Tai JH, (2000) Development of a tetracycline controlled gene expression system in the parasitic protozoan Giardia lamblia. Mol Biochem Parasitol 105: 51-60.
    • (2000) Mol Biochem Parasitol , vol.105 , pp. 51-60
    • Sun, C.H.1    Tai, J.H.2
  • 31
    • 0034905285 scopus 로고    scopus 로고
    • Chromatin and histones from Giardia lamblia: a new puzzle in primitive eukaryotes
    • Triana O, Galanti N, Olea N, Hellman U, Wernstedt C, et al. (2001) Chromatin and histones from Giardia lamblia: a new puzzle in primitive eukaryotes. J Cell Biochem 82: 573-582.
    • (2001) J Cell Biochem , vol.82 , pp. 573-582
    • Triana, O.1    Galanti, N.2    Olea, N.3    Hellman, U.4    Wernstedt, C.5
  • 32
    • 0028281595 scopus 로고
    • Chromosome rearrangements in Giardia lamblia
    • Le Blancq SM, (1994) Chromosome rearrangements in Giardia lamblia. Parasitol Today 10: 177-179.
    • (1994) Parasitol Today , vol.10 , pp. 177-179
    • Le Blancq, S.M.1
  • 33
    • 0029999086 scopus 로고    scopus 로고
    • Mapping variation in chromosome homologues of different Giardia strains
    • Upcroft JA, Chen N, Upcroft P, (1996) Mapping variation in chromosome homologues of different Giardia strains. Mol Biochem Parasitol 76: 135-143.
    • (1996) Mol Biochem Parasitol , vol.76 , pp. 135-143
    • Upcroft, J.A.1    Chen, N.2    Upcroft, P.3
  • 34
    • 57749206034 scopus 로고    scopus 로고
    • Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex
    • Wang Y, Juranek S, Li H, Sheng G, Tuschl T, et al. (2008) Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex. Nature 456: 921-926.
    • (2008) Nature , vol.456 , pp. 921-926
    • Wang, Y.1    Juranek, S.2    Li, H.3    Sheng, G.4    Tuschl, T.5
  • 35
    • 2442679207 scopus 로고    scopus 로고
    • Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain
    • Ma JB, Ye K, Patel DJ, (2004) Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature 429: 318-322.
    • (2004) Nature , vol.429 , pp. 318-322
    • Ma, J.B.1    Ye, K.2    Patel, D.J.3
  • 38
    • 3242736704 scopus 로고    scopus 로고
    • Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
    • Meister G, Landthaler M, Patkaniowska A, Dorsett Y, Teng G, et al. (2004) Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol Cell 15: 185-197.
    • (2004) Mol Cell , vol.15 , pp. 185-197
    • Meister, G.1    Landthaler, M.2    Patkaniowska, A.3    Dorsett, Y.4    Teng, G.5
  • 40
    • 84870342928 scopus 로고    scopus 로고
    • The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1
    • Houzet L, Klase Z, Yeung ML, Wu A, Le SY, et al. (2012) The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1. Nucleic Acids Res 40: 11684-11696.
    • (2012) Nucleic Acids Res , vol.40 , pp. 11684-11696
    • Houzet, L.1    Klase, Z.2    Yeung, M.L.3    Wu, A.4    Le, S.Y.5
  • 41
    • 84863694435 scopus 로고    scopus 로고
    • Posttranscriptional upregulation by microRNAs
    • Vasudevan S, (2012) Posttranscriptional upregulation by microRNAs. Wiley Interdiscip Rev RNA 3: 311-330.
    • (2012) Wiley Interdiscip Rev RNA , vol.3 , pp. 311-330
    • Vasudevan, S.1
  • 42
    • 33947262696 scopus 로고    scopus 로고
    • AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2
    • Vasudevan S, Steitz JA, (2007) AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2. Cell 128: 1105-1118.
    • (2007) Cell , vol.128 , pp. 1105-1118
    • Vasudevan, S.1    Steitz, J.A.2
  • 43
    • 36749026906 scopus 로고    scopus 로고
    • Switching from repression to activation: microRNAs can up-regulate translation
    • Vasudevan S, Tong Y, Steitz JA, (2007) Switching from repression to activation: microRNAs can up-regulate translation. Science 318: 1931-1934.
    • (2007) Science , vol.318 , pp. 1931-1934
    • Vasudevan, S.1    Tong, Y.2    Steitz, J.A.3
  • 44
    • 80053208713 scopus 로고    scopus 로고
    • miR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components
    • Roberts AP, Lewis AP, Jopling CL, (2011) miR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components. Nucleic Acids Res 39: 7716-7729.
    • (2011) Nucleic Acids Res , vol.39 , pp. 7716-7729
    • Roberts, A.P.1    Lewis, A.P.2    Jopling, C.L.3
  • 45
    • 58049217312 scopus 로고    scopus 로고
    • microRNA-122 stimulates translation of hepatitis C virus RNA
    • Henke JI, Goergen D, Zheng J, Song Y, Schuttler CG, et al. (2008) microRNA-122 stimulates translation of hepatitis C virus RNA. EMBO J 27: 3300-3310.
    • (2008) EMBO J , vol.27 , pp. 3300-3310
    • Henke, J.I.1    Goergen, D.2    Zheng, J.3    Song, Y.4    Schuttler, C.G.5
  • 46
    • 70349961432 scopus 로고    scopus 로고
    • Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes
    • Wang Y, Juranek S, Li H, Sheng G, Wardle GS, et al. (2009) Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes. Nature 461: 754-761.
    • (2009) Nature , vol.461 , pp. 754-761
    • Wang, Y.1    Juranek, S.2    Li, H.3    Sheng, G.4    Wardle, G.S.5
  • 47
    • 84861451595 scopus 로고    scopus 로고
    • The Crystal Structure of Human Argonaute2
    • Schirle NT, Macrae IJ, (2012) The Crystal Structure of Human Argonaute2. Science 336: 1037-1040.
    • (2012) Science , vol.336 , pp. 1037-1040
    • Schirle, N.T.1    Macrae, I.J.2
  • 48
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: a unified platform for automated protein structure and function prediction
    • Roy A, Kucukural A, Zhang Y, (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5: 725-738.
    • (2010) Nat Protoc , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 50
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: a case study using the Phyre server
    • Kelley LA, Sternberg MJ, (2009) Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 4: 363-371.
    • (2009) Nat Protoc , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.2
  • 51
    • 0032054650 scopus 로고    scopus 로고
    • Episomal and integrated maintenance of foreign DNA in Giardia lamblia
    • Singer SM, Yee J, Nash TE, (1998) Episomal and integrated maintenance of foreign DNA in Giardia lamblia. Mol Biochem Parasitol 92: 59-69.
    • (1998) Mol Biochem Parasitol , vol.92 , pp. 59-69
    • Singer, S.M.1    Yee, J.2    Nash, T.E.3


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