-
1
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew, R.W. and Sontheimer, E.J. (2009) Origins and mechanisms of miRNAs and siRNAs. Cell, 136, 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
2
-
-
77953629046
-
Regulation of mRNA translation and stability by microRNAs
-
Fabian, M.R., Sonenberg, N. and Filipowicz, W. (2010) Regulation of mRNA translation and stability by microRNAs. Annu. Rev. Biochem., 79, 351-379.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 351-379
-
-
Fabian, M.R.1
Sonenberg, N.2
Filipowicz, W.3
-
3
-
-
34249810892
-
Argonaute proteins: Mediators of RNA silencing
-
DOI 10.1016/j.molcel.2007.05.001, PII S1097276507002572
-
Peters, L. and Meister, G. (2007) Argonaute proteins: mediators of RNA silencing. Mol. Cell, 26, 611-623. (Pubitemid 46856239)
-
(2007)
Molecular Cell
, vol.26
, Issue.5
, pp. 611-623
-
-
Peters, L.1
Meister, G.2
-
4
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., Rothballer, A., Ascano, M. Jr, Jungkamp, A.C., Munschauer, M. et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell, 141, 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano Jr., M.8
Jungkamp, A.C.9
Munschauer, M.10
-
5
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi, S.W., Zang, J.B., Mele, A. and Darnell, R.B. (2009) Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature, 460, 479-486.
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
6
-
-
77957662209
-
Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 30UTRs
-
Schnall-Levin, M., Zhao, Y., Perrimon, N. and Berger, B. (2010) Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 30UTRs. Proc. Natl Acad. Sci. USA, 107, 15751-15756.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 15751-15756
-
-
Schnall-Levin, M.1
Zhao, Y.2
Perrimon, N.3
Berger, B.4
-
7
-
-
59649125888
-
Biological basis for restriction of microRNA targets to the 30 untranslated region in mammalian mRNAs
-
Gu, S., Jin, L., Zhang, F., Sarnow, P. and Kay, M.A. (2009) Biological basis for restriction of microRNA targets to the 30 untranslated region in mammalian mRNAs. Nat. Struct. Mol. Biol., 16, 144-150.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 144-150
-
-
Gu, S.1
Jin, L.2
Zhang, F.3
Sarnow, P.4
Kay, M.A.5
-
8
-
-
54549108798
-
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation
-
Tay, Y., Zhang, J., Thomson, A.M., Lim, B. and Rigoutsos, I. (2008) MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature, 455, 1124-1128.
-
(2008)
Nature
, vol.455
, pp. 1124-1128
-
-
Tay, Y.1
Zhang, J.2
Thomson, A.M.3
Lim, B.4
Rigoutsos, I.5
-
9
-
-
42449086421
-
MiR-148 targets human DNMT3b protein coding region
-
DOI 10.1261/rna.972008
-
Duursma, A.M., Kedde, M., Schrier, M., le Sage, C. and Agami, R. (2008) miR-148 targets human DNMT3b protein coding region. RNA, 14, 872-877. (Pubitemid 351574909)
-
(2008)
RNA
, vol.14
, Issue.5
, pp. 872-877
-
-
Duursma, A.M.1
Kedde, M.2
Schrier, M.3
Le Sage, C.4
Agami, R.5
-
10
-
-
67651083537
-
CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation
-
Elcheva, I., Goswami, S., Noubissi, F.K. and Spiegelman, V.S. (2009) CRD-BP protects the coding region of betaTrCP1 mRNA from miR-183-mediated degradation. Mol. Cell, 35, 240-246.
-
(2009)
Mol. Cell
, vol.35
, pp. 240-246
-
-
Elcheva, I.1
Goswami, S.2
Noubissi, F.K.3
Spiegelman, V.S.4
-
11
-
-
54449097149
-
A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence
-
Forman, J.J., Legesse-Miller, A. and Coller, H.A. (2008) A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence. Proc. Natl Acad. Sci. USA, 105, 14879-14884.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 14879-14884
-
-
Forman, J.J.1
Legesse-Miller, A.2
Coller, H.A.3
-
12
-
-
34547441263
-
Target mRNAs are repressed as efficiently by microRNA-binding sites in the 5′ UTR as in the 3′ UTR
-
DOI 10.1073/pnas.0703820104
-
Lytle, J.R., Yario, T.A. and Steitz, J.A. (2007) Target mRNAs are repressed as efficiently by microRNA-binding sites in the 50 UTR as in the 30 UTR. Proc. Natl Acad. Sci. USA, 104, 9667-9672. (Pubitemid 47175324)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.23
, pp. 9667-9672
-
-
Lytle, J.R.1
Yario, T.A.2
Steitz, J.A.3
-
13
-
-
78649659734
-
Mechanism of translational regulation by miR-2 from sites in the 50 untranslated region or the open reading frame
-
Moretti, F., Thermann, R. and Hentze, M.W. (2010) Mechanism of translational regulation by miR-2 from sites in the 50 untranslated region or the open reading frame. RNA, 16, 2493-2502.
-
(2010)
RNA
, vol.16
, pp. 2493-2502
-
-
Moretti, F.1
Thermann, R.2
Hentze, M.W.3
-
14
-
-
77954664186
-
A viral microRNA down-regulates multiple cell cycle genes through mRNA 50UTRs
-
Grey, F., Tirabassi, R., Meyers, H., Wu, G., McWeeney, S., Hook, L. and Nelson, J.A. (2010) A viral microRNA down-regulates multiple cell cycle genes through mRNA 50UTRs. PLoS Pathog., 6, e1000967.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Grey, F.1
Tirabassi, R.2
Meyers, H.3
Wu, G.4
McWeeney, S.5
Hook, L.6
Nelson, J.A.7
-
15
-
-
43449090367
-
MicroRNA-10a Binds the 5′UTR of Ribosomal Protein mRNAs and Enhances Their Translation
-
DOI 10.1016/j.molcel.2008.05.001, PII S1097276508003286
-
Orom, U.A., Nielsen, F.C. and Lund, A.H. (2008) MicroRNA-10a binds the 50UTR of ribosomal protein mRNAs and enhances their translation. Mol. Cell, 30, 460-471. (Pubitemid 351672378)
-
(2008)
Molecular Cell
, vol.30
, Issue.4
, pp. 460-471
-
-
Orom, U.A.1
Nielsen, F.C.2
Lund, A.H.3
-
16
-
-
73149086393
-
MicroRNA mir-346 targets the 50-untranslated region of receptor-interacting protein 140 (RIP140) mRNA and up-regulates its protein expression
-
Tsai, N.P., Lin, Y.L. and Wei, L.N. (2009) MicroRNA mir-346 targets the 50-untranslated region of receptor-interacting protein 140 (RIP140) mRNA and up-regulates its protein expression. Biochem. J., 424, 411-418.
-
(2009)
Biochem. J.
, vol.424
, pp. 411-418
-
-
Tsai, N.P.1
Lin, Y.L.2
Wei, L.N.3
-
17
-
-
24644483623
-
Molecular biology: Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
-
DOI 10.1126/science.1113329
-
Jopling, C.L., Yi, M., Lancaster, A.M., Lemon, S.M. and Sarnow, P. (2005) Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science, 309, 1577-1581. (Pubitemid 41266486)
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1577-1581
-
-
Jopling, C.L.1
Yi, M.2
Lancaster, A.M.3
Lemon, S.M.4
Sarnow, P.5
-
18
-
-
23944481107
-
Unscrambling hepatitis C virus-host interactions
-
DOI 10.1038/nature04076
-
Chisari, F.V. (2005) Unscrambling hepatitis C virus-host interactions. Nature, 436, 930-932. (Pubitemid 41191667)
-
(2005)
Nature
, vol.436
, Issue.7053
, pp. 930-932
-
-
Chisari, F.V.1
-
19
-
-
74249112787
-
Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection
-
Lanford, R.E., Hildebrandt-Eriksen, E.S., Petri, A., Persson, R., Lindow, M., Munk, M.E., Kauppinen, S. and Orum, H. (2010) Therapeutic silencing of microRNA-122 in primates with chronic hepatitis C virus infection. Science, 327, 198-201.
-
(2010)
Science
, vol.327
, pp. 198-201
-
-
Lanford, R.E.1
Hildebrandt-Eriksen, E.S.2
Petri, A.3
Persson, R.4
Lindow, M.5
Munk, M.E.6
Kauppinen, S.7
Orum, H.8
-
20
-
-
58049217312
-
MicroRNA-122 stimulates translation of hepatitis C virus RNA
-
Henke, J.I., Goergen, D., Zheng, J., Song, Y., Schuttler, C.G., Fehr, C., Junemann, C. and Niepmann, M. (2008) microRNA-122 stimulates translation of hepatitis C virus RNA. EMBO J., 27, 3300-3310.
-
(2008)
EMBO J.
, vol.27
, pp. 3300-3310
-
-
Henke, J.I.1
Goergen, D.2
Zheng, J.3
Song, Y.4
Schuttler, C.G.5
Fehr, C.6
Junemann, C.7
Niepmann, M.8
-
21
-
-
77953315225
-
MiR-122 Regulation of hepatitis C virus translation and infectious virus production
-
Jangra, R.K., Yi, M. and Lemon, S.M. (2010) miR-122 Regulation of hepatitis C virus translation and infectious virus production. J Virol., 84, 6615-6625.
-
(2010)
J Virol.
, vol.84
, pp. 6615-6625
-
-
Jangra, R.K.1
Yi, M.2
Lemon, S.M.3
-
22
-
-
70449729916
-
In vitro characterization of a miR-122-sensitive double-helical switch element in the 50 region of hepatitis C virus RNA
-
Diaz-Toledano, R., Ariza-Mateos, A., Birk, A., Martinez-Garcia, B. and Gomez, J. (2009) In vitro characterization of a miR-122-sensitive double-helical switch element in the 50 region of hepatitis C virus RNA. Nucleic Acids Res., 37, 5498-5510.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5498-5510
-
-
Diaz-Toledano, R.1
Ariza-Mateos, A.2
Birk, A.3
Martinez-Garcia, B.4
Gomez, J.5
-
23
-
-
33144471074
-
Production of infectious genotype 1a hepatitis C virus (Hutchinson strain) in cultured human hepatoma cells
-
DOI 10.1073/pnas.0510727103
-
Yi, M., Villanueva, R.A., Thomas, D.L., Wakita, T. and Lemon, S.M. (2006) Production of infectious genotype 1a hepatitis C virus (Hutchinson strain) in cultured human hepatoma cells. Proc. Natl Acad. Sci. USA, 103, 2310-2315. (Pubitemid 43271666)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.7
, pp. 2310-2315
-
-
Yi, M.1
Villanueva, R.A.2
Thomas, D.L.3
Wakita, T.4
Lemon, S.M.5
-
24
-
-
46749124698
-
Position-Dependent Function for a Tandem MicroRNA miR-122-Binding Site Located in the Hepatitis C Virus RNA Genome
-
DOI 10.1016/j.chom.2008.05.013, PII S193131280800173X
-
Jopling, C.L., Schutz, S. and Sarnow, P. (2008) Position-dependent function for a tandem microRNA miR-122-binding site located in the hepatitis C virus RNA genome. Cell Host Microbe, 4, 77-85. (Pubitemid 351944051)
-
(2008)
Cell Host and Microbe
, vol.4
, Issue.1
, pp. 77-85
-
-
Jopling, C.L.1
Schutz, S.2
Sarnow, P.3
-
25
-
-
3242736704
-
Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
-
DOI 10.1016/j.molcel.2004.07.007, PII S1097276504004150
-
Meister, G., Landthaler, M., Patkaniowska, A., Dorsett, Y., Teng, G. and Tuschl, T. (2004) Human argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol. Cell, 15, 185-197. (Pubitemid 38950966)
-
(2004)
Molecular Cell
, vol.15
, Issue.2
, pp. 185-197
-
-
Meister, G.1
Landthaler, M.2
Patkaniowska, A.3
Dorsett, Y.4
Teng, G.5
Tuschl, T.6
-
26
-
-
78650258635
-
Two PABPC1-binding sites in GW182 proteins promote miRNA-mediated gene silencing
-
Huntzinger, E., Braun, J.E., Heimstadt, S., Zekri, L. and Izaurralde, E. Two PABPC1-binding sites in GW182 proteins promote miRNA-mediated gene silencing. EMBO J., 29, 4146-4160.
-
EMBO J.
, vol.29
, pp. 4146-4160
-
-
Huntzinger, E.1
Braun, J.E.2
Heimstadt, S.3
Zekri, L.4
Izaurralde, E.5
-
27
-
-
23844474518
-
Analysis of the 5′ end structure of HCV subgenomic RNA replicated in a Huh7 cell line
-
DOI 10.1159/000081736
-
Takahashi, H., Yamaji, M., Hosaka, M., Kishine, H., Hijikata, M. and Shimotohno, K. (2005) Analysis of the 50 end structure of HCV subgenomic RNA replicated in a Huh7 cell line. Intervirology, 48, 104-111. (Pubitemid 41201499)
-
(2005)
Intervirology
, vol.48
, Issue.2-3
, pp. 104-111
-
-
Takahashi, H.1
Yamaji, M.2
Hosaka, M.3
Kishine, H.4
Hijikata, M.5
Shimotohno, K.6
-
28
-
-
33749267037
-
Liposome-mediated RNA transfection should be used with caution
-
DOI 10.1261/rna.191706
-
Barreau, C., Dutertre, S., Paillard, L. and Osborne, H.B. (2006) Liposome-mediated RNA transfection should be used with caution. RNA, 12, 1790-1793. (Pubitemid 44484251)
-
(2006)
RNA
, vol.12
, Issue.10
, pp. 1790-1793
-
-
Barreau, C.1
Dutertre, S.2
Paillard, L.3
Osborne, H.B.4
-
29
-
-
0031905698
-
A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initation of hepatitis C and classical swine fever virus RNAs
-
Pestova, T.V., Shatsky, I.N., Fletcher, S.P., Jackson, R.J. and Hellen, C.U. (1998) A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs. Genes Dev., 12, 67-83. (Pubitemid 28083659)
-
(1998)
Genes and Development
, vol.12
, Issue.1
, pp. 67-83
-
-
Pestova, T.V.1
Shatsky, I.N.2
Fletcher, S.P.3
Jackson, R.J.4
Hellen, C.U.T.5
-
30
-
-
0034663980
-
A cell cycle-dependent protein serves as a template-specific translation initiation factor
-
Pilipenko, E.V., Pestova, T.V., Kolupaeva, V.G., Khitrina, E.V., Poperechnaya, A.N., Agol, V.I. and Hellen, C.U. (2000) A cell cycle-dependent protein serves as a template-specific translation initiation factor. Genes Dev., 14, 2028-2045. (Pubitemid 30637353)
-
(2000)
Genes and Development
, vol.14
, Issue.16
, pp. 2028-2045
-
-
Pilipenko, E.V.1
Pestova, T.V.2
Kolupaeva, V.G.3
Khitrina, E.V.4
Poperechnaya, A.N.5
Agol, V.I.6
Hellen, C.U.T.7
-
31
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
DOI 10.1016/S0092-8674(03)01018-3
-
Lewis, B.P., Shih, I.H., Jones-Rhoades, M.W., Bartel, D.P. and Burge, C.B. (2003) Prediction of mammalian microRNA targets. Cell, 115, 787-798. (Pubitemid 38058492)
-
(2003)
Cell
, vol.115
, Issue.7
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.-H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
32
-
-
34250805982
-
MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing
-
DOI 10.1016/j.molcel.2007.06.017, PII S1097276507004078
-
Grimson, A., Farh, K.K., Johnston, W.K., Garrett-Engele, P., Lim, L.P. and Bartel, D.P. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol. Cell, 27, 91-105. (Pubitemid 46991392)
-
(2007)
Molecular Cell
, vol.27
, Issue.1
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.-H.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
33
-
-
79952768199
-
Masking the 50 terminal nucleotides of the hepatitis C virus genome by an unconventional microRNA-target RNA complex
-
Machlin, E.S., Sarnow, P. and Sagan, S.M. Masking the 50 terminal nucleotides of the hepatitis C virus genome by an unconventional microRNA-target RNA complex. Proc. Natl Acad. Sci. USA, 108, 3193-3198.
-
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 3193-3198
-
-
MacHlin, E.S.1
Sarnow, P.2
Sagan, S.M.3
-
34
-
-
0037407151
-
Long-range RNA-RNA interaction between the 5′ nontranslated region and the core-coding sequences of hepatitis C virus modulates the IRES-dependent translation
-
DOI 10.1261/rna.2185603
-
Kim, Y.K., Lee, S.H., Kim, C.S., Seol, S.K. and Jang, S.K. (2003) Long-range RNA-RNA interaction between the 50 nontranslated region and the core-coding sequences of hepatitis C virus modulates the IRES-dependent translation. RNA, 9, 599-606. (Pubitemid 36505457)
-
(2003)
RNA
, vol.9
, Issue.5
, pp. 599-606
-
-
Kim, Y.K.1
Lee, S.H.2
Kim, C.S.3
Seol, S.K.4
Jang, S.K.5
-
35
-
-
34547913440
-
Cellular cofactors affecting hepatitis C virus infection and replication
-
DOI 10.1073/pnas.0704894104
-
Randall, G., Panis, M., Cooper, J.D., Tellinghuisen, T.L., Sukhodolets, K.E., Pfeffer, S., Landthaler, M., Landgraf, P., Kan, S., Lindenbach, B.D. et al. (2007) Cellular cofactors affecting hepatitis C virus infection and replication. Proc. Natl Acad. Sci. USA, 104, 12884-12889. (Pubitemid 47255249)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.31
, pp. 12884-12889
-
-
Randall, G.1
Panis, M.2
Cooper, J.D.3
Tellinghuisen, T.L.4
Sukhodolets, K.E.5
Pfeffer, S.6
Landthaler, M.7
Landgraf, P.8
Kan, S.9
Lindenbach, B.D.10
Chien, M.11
Weir, D.B.12
Russo, J.J.13
Ju, J.14
Brownstein, M.J.15
Sheridan, R.16
Sander, C.17
Zavolan, M.18
Tuschl, T.19
Rice, C.M.20
more..
-
36
-
-
79551704610
-
Human Ago2 is required for efficient miR-122 regulation of HCV RNA accumulation and translation
-
Wilson, J.A., Zhang, C., Huys, A. and Richardson, C.D. (2011) Human Ago2 is required for efficient miR-122 regulation of HCV RNA accumulation and translation. J. Virol., 85, 2342-2350.
-
(2011)
J. Virol.
, vol.85
, pp. 2342-2350
-
-
Wilson, J.A.1
Zhang, C.2
Huys, A.3
Richardson, C.D.4
-
37
-
-
36849048778
-
Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression
-
DOI 10.1016/j.cell.2007.10.032, PII S0092867407013517
-
Diederichs, S. and Haber, D.A. (2007) Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression. Cell, 131, 1097-1108. (Pubitemid 350235019)
-
(2007)
Cell
, vol.131
, Issue.6
, pp. 1097-1108
-
-
Diederichs, S.1
Haber, D.A.2
-
38
-
-
61449186404
-
Selective stabilization of mammalian microRNAs by 30 adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
-
Katoh, T., Sakaguchi, Y., Miyauchi, K., Suzuki, T., Kashiwabara, S. and Baba, T. (2009) Selective stabilization of mammalian microRNAs by 30 adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev., 23, 433-438.
-
(2009)
Genes Dev.
, vol.23
, pp. 433-438
-
-
Katoh, T.1
Sakaguchi, Y.2
Miyauchi, K.3
Suzuki, T.4
Kashiwabara, S.5
Baba, T.6
-
39
-
-
72849125318
-
Modulation of hepatitis C virus RNA abundance and the isoprenoid biosynthesis pathway by microRNA miR-122 involves distinct mechanisms
-
Norman, K.L. and Sarnow, P. (2010) Modulation of hepatitis C virus RNA abundance and the isoprenoid biosynthesis pathway by microRNA miR-122 involves distinct mechanisms. J. Virol., 84, 666-670.
-
(2010)
J. Virol.
, vol.84
, pp. 666-670
-
-
Norman, K.L.1
Sarnow, P.2
|